MSTRG.14579.1.p1 (mRNA) -

Overview
NameMSTRG.14579.1.p1
Unique NameMSTRG.14579.1.p1
TypemRNA
OrganismClytia hemisphaerica_ch_hm2_pilon (Jellyfish)

Sequence
The following sequences are available for this feature:

mRNA from alignment at sc0000122_pilon:556102..558606-

Legend: polypeptideCDSexon
Hold the cursor over a type above to highlight its positions in the sequence below.
>MSTRG.14579.1.p1 ID=MSTRG.14579.1.p1|Name=MSTRG.14579.1.p1|organism=Clytia hemisphaerica_ch_hm2_pilon|type=mRNA|length=2505bp|location=Sequence derived from alignment at sc0000122_pilon:556102..558606- (Clytia hemisphaerica_ch_hm2_pilon)
AATTTTGAAGGAATAAAAAGAGAAATTCAGGCAATCGCTGCAAAAAGTAA
ACTTATTTATATTTTTGATACGCCGCTTTTCGGTGATTTTAGAAATAAGT
CATACGACGAGCTTTTGACCAATTTTCCTAGTGACTGGAGTGATTTCTAT
CGAATGTATAACAGATGGCTTCTTAGTTACAAATATTACAAATAGCGTAT
GTACTTAAATTTAAAAGAAATAGTTTTTATCTTTAGTTGCTGTTCCCTCA
AAATTTGAGTTTTCACCCTACGAAAACAGTGTTTTACTTTTTCACGATAT
GAAGACAGATCTTTATGATGACCCTGAATATTTGGAGCTGAAAAGAACGT
GCCCTGTCCTCCCTGACATATCACCGTTGAGGATTCCAATGTTATTGAAG
TCTAAAGCTGATAAGAAGAAGCTTTTACATGACCTTGTCAAATCAGTAGA
AAAAAACAAAAAACATGACATAAGCAATTTGTTGTCCTATCTCACAGTCG
GATTCCAACGTCTCATGGAATCAACATATTTTGAAAAGGTTCACCATCTT
GTTAGAGTCGAACAACTTGCAGGTTAGTCTTCTCAGTTTTAAACTGGTGC
GTGCTTAAGATAAGTTTTTTTTCAAATCCAAATGAAAAATGAATTTGTTG
ATTAGCATTTAGACGAAAGCTTAGAAATGTTCTCGGTTTAAAATGATATG
GCTATTTTTATTATTTTGGTTATTTTATTATTTTTAGATACCGCAAAACA
ACGGACGGTGCTACGCAAGAAGGCCTTTGCATGTAATTCAATTATCAAAA
CGCTTGTGACAAGCTACAACAGTATCGCTATCGATCTAGTTTTAGTTGAC
GATGTACTGCGTGGAGTTTTTGAATGGAAAGTGAAACTTTTCACGCAAGC
TTATCCCCCTGAATTTACAGGTATGACAATTGGGACAATTGACTTTAATT
CTGTTTAAATTTTTGCTTGAAACAATAGATTCAAAAAACGAAAGGAGTGT
AAAATTGTTTCTTGTATTGTTTCTTTTTGTTGTAGTTTTTTTTTTTAGTT
TTCCCATCACAGTTTTATTATTACAGATGGCCAAACAATGCAATATGTTT
TTATCAAAGGCTATATAGATGTACTGTTTTTCAATTATAGATGTTACAAA
AAGAGCCGTCCTAGAGTCCTTTACAAAAAAAAAGAGGTGTGAAGAAGAAT
TGGTGATATTGGAACAGGATATGACCAAATATCTACGTTACTACGGCAAT
ATTTGCTTGGAATTAGAGCAGCAAATTAAAGACACTGAGGTATTTTATTT
TCATTACTCTTTAATGTTACTGTTTCGAGAGTATACAGTTTAATAAAAGG
CGGAAATTTAAAAAAATTAAAGAGCTGCTTCCAAGAGCTTTAATGATAGA
CTACGTTAATAACATATATCCTGGAAGTATAGAACGCAATTCTGTTTTTT
ATTCTTCCCATTTTCTTTCGCAACAGAGTGGCAGTAGTCTCATTTTTCAA
TTCCTAGTTGTTTTTTGTTATTTTATAATTTTGGTGAAAGTGGCAATTTT
GTTATAAGCTTTTATTTTACTCTACTGAACTCGACGTCATCAAAAATTAT
TAGAAAGCAAAGTTCGGCCAAGAGTAGACCCTAACTAGGAGTTGTTGATA
TTCACACTTCTTACACTAGAAAATAATTTAACTTTTCTTTAGACCTCGAA
AACTGGTATGCTCATCTTGCTCCGTGATGGATACCTATTTGCACAAAATA
AGCTGCATCTCGGATTGGAGTTATTTCAGCCATTTGTACCTGTCATCTCA
TCATTAGAACAAAGTAACAACTCCCCCTCTGATGATGATGACGACGATGA
TGACTATGATGATGACGAAGGGGATGTTAACAACGACAACGACATTGACG
CAGATAACGAAGAAAATGAAGATGTTTTTTTGGACTTGGAGTTGATTTTG
TTCACGGGTAATGAGTTGTTAGAAGGAAAGTCATTTTCACATACTGAAAA
CACTATTCAATTTCCTCGTGATGTATGTCAGTCGCATCTAAACGGTAGAA
ATGGGAGCAATGCCTGTACAACCATCGCTCTATTGGTTGGGCATTTCTTG
TACGATCTTGTTTGCGGAAATTCCCTCCAGAAAATCGATGTGTTAAAAGC
TTTTGTGGGATGTATCGATTTTGGTAATTTTTATCATGGTGAACAATACG
GAACAACAGTCGTCGAGAGCATGGATCTACTCCCGATCAGCTTTTACATT
GAAAAAGAACTTAATTGTACAGCTACTGAACTCTTTATGGTGCTGAACAG
AATTGACACACAGTCGTTTGTGGTTATCACTGACAACAATGAAAAATCTT
TTTGTTGTATTCCTTTTGATGATTTTTTTTATTTTTTTGACTCACACGTG
CATGGAGATTATGGTGCTTTGGTAGTACAACACTCCAAGAATAAGAACTT
CCAAAATTTTAATTTTTTTTCTGATTCAAATGAATTCTACGTATGTATTA
TTTCC

Coding sequence (CDS) from alignment at sc0000122_pilon:556102..558606-

>MSTRG.14579.1.p1 ID=MSTRG.14579.1.p1|Name=MSTRG.14579.1.p1|organism=Clytia hemisphaerica_ch_hm2_pilon|type=CDS|length=7635bp|location=Sequence derived from alignment at sc0000122_pilon:556102..558606- (Clytia hemisphaerica_ch_hm2_pilon)
ACCTCGAAAACTGGTATGCTCATCTTGCTCCGTGATGGATACCTATTTGC
ACAAAATAAGCTGCATCTCGGATTGGAGTTATTTCAGCCATTTGTACCTG
TCATCTCATCATTAGAACAAAGTAACAACTCCCCCTCTGATGATGATGAC
GACGATGATGACTATGATGATGACGAAGGGGATGTTAACAACGACAACGA
CATTGACGCAGATAACGAAGAAAATGAAGATGTTTTTTTGGACTTGGAGT
TGATTTTGTTCACGGGTAATGAGTTGTTAGAAGGAAAGTCATTTTCACAT
ACTGAAAACACTATTCAATTTCCTCGTGATGTATGTCAGTCGCATCTAAA
CGGTAGAAATGGGAGCAATGCCTGTACAACCATCGCTCTATTGGTTGGGC
ATTTCTTGTACGATCTTGTTTGCGGAAATTCCCTCCAGAAAATCGATGTG
TTAAAAGCTTTTGTGGGATGTATCGATTTTGGTAATTTTTATCATGGTGA
ACAATACGGAACAACAGTCGTCGAGAGCATGGATCTACTCCCGATCAGCT
TTTACATTGAAAAAGAACTTAATTGTACAGCTACTGAACTCTTTATGGTG
CTGAACAGAATTGACACACAGTCGTTTGTGGTTATCACTGACAACAATGA
AAAATCTTTTTGTTGTATTCCTTTTGATGATTTTTTTTATTTTTTTGACT
CACACGTGCATGGAGATTATGGTGCTTTGGTAGTACAACACTCCAAGAAT
AAGAACTTCCAAAATTTTAATTTTTTTTCTGATTCAAATGAATTCTACGT
ATGTATTATTTCCATGTTACAAAAAGAGCCGTCCTAGAGTCCTTTACAAA
AAAAAAGAGGTGTGAAGAAGAATTGGTGATATTGGAACAGGATATGACCA
AATATCTACGTTACTACGGCAATATTTGCTTGGAATTAGAGCAGCAAATT
AAAGACACTGAGATACCGCAAAACAACGGACGGTGCTACGCAAGAAGGCC
TTTGCATGTAATTCAATTATCAAAACGCTTGTGACAAGCTACAACAGTAT
CGCTATCGATCTAGTTTTAGTTGACGATGTACTGCGTGGAGTTTTTGAAT
GGAAAGTGAAACTTTTCACGCAAGCTTATCCCCCTGAATTTACAGTTGCT
GTTCCCTCAAAATTTGAGTTTTCACCCTACGAAAACAGTGTTTTACTTTT
TCACGATATGAAGACAGATCTTTATGATGACCCTGAATATTTGGAGCTGA
AAAGAACGTGCCCTGTCCTCCCTGACATATCACCGTTGAGGATTCCAATG
TTATTGAAGTCTAAAGCTGATAAGAAGAAGCTTTTACATGACCTTGTCAA
ATCAGTAGAAAAAAACAAAAAACATGACATAAGCAATTTGTTGTCCTATC
TCACAGTCGGATTCCAACGTCTCATGGAATCAACATATTTTGAAAAGGTT
CACCATCTTGTTAGAGTCGAACAACTTGCAGAATTTTGAAGGAATAAAAA
GAGAAATTCAGGCAATCGCTGCAAAAAACCTCGAAAACTGGTATGCTCAT
CTTGCTCCGTGATGGATACCTATTTGCACAAAATAAGCTGCATCTCGGAT
TGGAGTTATTTCAGCCATTTGTACCTGTCATCTCATCATTAGAACAAAGT
AACAACTCCCCCTCTGATGATGATGACGACGATGATGACTATGATGATGA
CGAAGGGGATGTTAACAACGACAACGACATTGACGCAGATAACGAAGAAA
ATGAAGATGTTTTTTTGGACTTGGAGTTGATTTTGTTCACGGGTAATGAG
TTGTTAGAAGGAAAGTCATTTTCACATACTGAAAACACTATTCAATTTCC
TCGTGATGTATGTCAGTCGCATCTAAACGGTAGAAATGGGAGCAATGCCT
GTACAACCATCGCTCTATTGGTTGGGCATTTCTTGTACGATCTTGTTTGC
GGAAATTCCCTCCAGAAAATCGATGTGTTAAAAGCTTTTGTGGGATGTAT
CGATTTTGGTAATTTTTATCATGGTGAACAATACGGAACAACAGTCGTCG
AGAGCATGGATCTACTCCCGATCAGCTTTTACATTGAAAAAGAACTTAAT
TGTACAGCTACTGAACTCTTTATGGTGCTGAACAGAATTGACACACAGTC
GTTTGTGGTTATCACTGACAACAATGAAAAATCTTTTTGTTGTATTCCTT
TTGATGATTTTTTTTATTTTTTTGACTCACACGTGCATGGAGATTATGGT
GCTTTGGTAGTACAACACTCCAAGAATAAGAACTTCCAAAATTTTAATTT
TTTTTCTGATTCAAATGAATTCTACGTATGTATTATTTCCATGTTACAAA
AAGAGCCGTCCTAGAGTCCTTTACAAAAAAAAAGAGGTGTGAAGAAGAAT
TGGTGATATTGGAACAGGATATGACCAAATATCTACGTTACTACGGCAAT
ATTTGCTTGGAATTAGAGCAGCAAATTAAAGACACTGAGATACCGCAAAA
CAACGGACGGTGCTACGCAAGAAGGCCTTTGCATGTAATTCAATTATCAA
AACGCTTGTGACAAGCTACAACAGTATCGCTATCGATCTAGTTTTAGTTG
ACGATGTACTGCGTGGAGTTTTTGAATGGAAAGTGAAACTTTTCACGCAA
GCTTATCCCCCTGAATTTACAGTTGCTGTTCCCTCAAAATTTGAGTTTTC
ACCCTACGAAAACAGTGTTTTACTTTTTCACGATATGAAGACAGATCTTT
ATGATGACCCTGAATATTTGGAGCTGAAAAGAACGTGCCCTGTCCTCCCT
GACATATCACCGTTGAGGATTCCAATGTTATTGAAGTCTAAAGCTGATAA
GAAGAAGCTTTTACATGACCTTGTCAAATCAGTAGAAAAAAACAAAAAAC
ATGACATAAGCAATTTGTTGTCCTATCTCACAGTCGGATTCCAACGTCTC
ATGGAATCAACATATTTTGAAAAGGTTCACCATCTTGTTAGAGTCGAACA
ACTTGCAGAATTTTGAAGGAATAAAAAGAGAAATTCAGGCAATCGCTGCA
AAAAACCTCGAAAACTGGTATGCTCATCTTGCTCCGTGATGGATACCTAT
TTGCACAAAATAAGCTGCATCTCGGATTGGAGTTATTTCAGCCATTTGTA
CCTGTCATCTCATCATTAGAACAAAGTAACAACTCCCCCTCTGATGATGA
TGACGACGATGATGACTATGATGATGACGAAGGGGATGTTAACAACGACA
ACGACATTGACGCAGATAACGAAGAAAATGAAGATGTTTTTTTGGACTTG
GAGTTGATTTTGTTCACGGGTAATGAGTTGTTAGAAGGAAAGTCATTTTC
ACATACTGAAAACACTATTCAATTTCCTCGTGATGTATGTCAGTCGCATC
TAAACGGTAGAAATGGGAGCAATGCCTGTACAACCATCGCTCTATTGGTT
GGGCATTTCTTGTACGATCTTGTTTGCGGAAATTCCCTCCAGAAAATCGA
TGTGTTAAAAGCTTTTGTGGGATGTATCGATTTTGGTAATTTTTATCATG
GTGAACAATACGGAACAACAGTCGTCGAGAGCATGGATCTACTCCCGATC
AGCTTTTACATTGAAAAAGAACTTAATTGTACAGCTACTGAACTCTTTAT
GGTGCTGAACAGAATTGACACACAGTCGTTTGTGGTTATCACTGACAACA
ATGAAAAATCTTTTTGTTGTATTCCTTTTGATGATTTTTTTTATTTTTTT
GACTCACACGTGCATGGAGATTATGGTGCTTTGGTAGTACAACACTCCAA
GAATAAGAACTTCCAAAATTTTAATTTTTTTTCTGATTCAAATGAATTCT
ACGTATGTATTATTTCCATGTTACAAAAAGAGCCGTCCTAGAGTCCTTTA
CAAAAAAAAAGAGGTGTGAAGAAGAATTGGTGATATTGGAACAGGATATG
ACCAAATATCTACGTTACTACGGCAATATTTGCTTGGAATTAGAGCAGCA
AATTAAAGACACTGAGATACCGCAAAACAACGGACGGTGCTACGCAAGAA
GGCCTTTGCATGTAATTCAATTATCAAAACGCTTGTGACAAGCTACAACA
GTATCGCTATCGATCTAGTTTTAGTTGACGATGTACTGCGTGGAGTTTTT
GAATGGAAAGTGAAACTTTTCACGCAAGCTTATCCCCCTGAATTTACAGT
TGCTGTTCCCTCAAAATTTGAGTTTTCACCCTACGAAAACAGTGTTTTAC
TTTTTCACGATATGAAGACAGATCTTTATGATGACCCTGAATATTTGGAG
CTGAAAAGAACGTGCCCTGTCCTCCCTGACATATCACCGTTGAGGATTCC
AATGTTATTGAAGTCTAAAGCTGATAAGAAGAAGCTTTTACATGACCTTG
TCAAATCAGTAGAAAAAAACAAAAAACATGACATAAGCAATTTGTTGTCC
TATCTCACAGTCGGATTCCAACGTCTCATGGAATCAACATATTTTGAAAA
GGTTCACCATCTTGTTAGAGTCGAACAACTTGCAGAATTTTGAAGGAATA
AAAAGAGAAATTCAGGCAATCGCTGCAAAAAACCTCGAAAACTGGTATGC
TCATCTTGCTCCGTGATGGATACCTATTTGCACAAAATAAGCTGCATCTC
GGATTGGAGTTATTTCAGCCATTTGTACCTGTCATCTCATCATTAGAACA
AAGTAACAACTCCCCCTCTGATGATGATGACGACGATGATGACTATGATG
ATGACGAAGGGGATGTTAACAACGACAACGACATTGACGCAGATAACGAA
GAAAATGAAGATGTTTTTTTGGACTTGGAGTTGATTTTGTTCACGGGTAA
TGAGTTGTTAGAAGGAAAGTCATTTTCACATACTGAAAACACTATTCAAT
TTCCTCGTGATGTATGTCAGTCGCATCTAAACGGTAGAAATGGGAGCAAT
GCCTGTACAACCATCGCTCTATTGGTTGGGCATTTCTTGTACGATCTTGT
TTGCGGAAATTCCCTCCAGAAAATCGATGTGTTAAAAGCTTTTGTGGGAT
GTATCGATTTTGGTAATTTTTATCATGGTGAACAATACGGAACAACAGTC
GTCGAGAGCATGGATCTACTCCCGATCAGCTTTTACATTGAAAAAGAACT
TAATTGTACAGCTACTGAACTCTTTATGGTGCTGAACAGAATTGACACAC
AGTCGTTTGTGGTTATCACTGACAACAATGAAAAATCTTTTTGTTGTATT
CCTTTTGATGATTTTTTTTATTTTTTTGACTCACACGTGCATGGAGATTA
TGGTGCTTTGGTAGTACAACACTCCAAGAATAAGAACTTCCAAAATTTTA
ATTTTTTTTCTGATTCAAATGAATTCTACGTATGTATTATTTCCATGTTA
CAAAAAGAGCCGTCCTAGAGTCCTTTACAAAAAAAAAGAGGTGTGAAGAA
GAATTGGTGATATTGGAACAGGATATGACCAAATATCTACGTTACTACGG
CAATATTTGCTTGGAATTAGAGCAGCAAATTAAAGACACTGAGATACCGC
AAAACAACGGACGGTGCTACGCAAGAAGGCCTTTGCATGTAATTCAATTA
TCAAAACGCTTGTGACAAGCTACAACAGTATCGCTATCGATCTAGTTTTA
GTTGACGATGTACTGCGTGGAGTTTTTGAATGGAAAGTGAAACTTTTCAC
GCAAGCTTATCCCCCTGAATTTACAGTTGCTGTTCCCTCAAAATTTGAGT
TTTCACCCTACGAAAACAGTGTTTTACTTTTTCACGATATGAAGACAGAT
CTTTATGATGACCCTGAATATTTGGAGCTGAAAAGAACGTGCCCTGTCCT
CCCTGACATATCACCGTTGAGGATTCCAATGTTATTGAAGTCTAAAGCTG
ATAAGAAGAAGCTTTTACATGACCTTGTCAAATCAGTAGAAAAAAACAAA
AAACATGACATAAGCAATTTGTTGTCCTATCTCACAGTCGGATTCCAACG
TCTCATGGAATCAACATATTTTGAAAAGGTTCACCATCTTGTTAGAGTCG
AACAACTTGCAGAATTTTGAAGGAATAAAAAGAGAAATTCAGGCAATCGC
TGCAAAAAACCTCGAAAACTGGTATGCTCATCTTGCTCCGTGATGGATAC
CTATTTGCACAAAATAAGCTGCATCTCGGATTGGAGTTATTTCAGCCATT
TGTACCTGTCATCTCATCATTAGAACAAAGTAACAACTCCCCCTCTGATG
ATGATGACGACGATGATGACTATGATGATGACGAAGGGGATGTTAACAAC
GACAACGACATTGACGCAGATAACGAAGAAAATGAAGATGTTTTTTTGGA
CTTGGAGTTGATTTTGTTCACGGGTAATGAGTTGTTAGAAGGAAAGTCAT
TTTCACATACTGAAAACACTATTCAATTTCCTCGTGATGTATGTCAGTCG
CATCTAAACGGTAGAAATGGGAGCAATGCCTGTACAACCATCGCTCTATT
GGTTGGGCATTTCTTGTACGATCTTGTTTGCGGAAATTCCCTCCAGAAAA
TCGATGTGTTAAAAGCTTTTGTGGGATGTATCGATTTTGGTAATTTTTAT
CATGGTGAACAATACGGAACAACAGTCGTCGAGAGCATGGATCTACTCCC
GATCAGCTTTTACATTGAAAAAGAACTTAATTGTACAGCTACTGAACTCT
TTATGGTGCTGAACAGAATTGACACACAGTCGTTTGTGGTTATCACTGAC
AACAATGAAAAATCTTTTTGTTGTATTCCTTTTGATGATTTTTTTTATTT
TTTTGACTCACACGTGCATGGAGATTATGGTGCTTTGGTAGTACAACACT
CCAAGAATAAGAACTTCCAAAATTTTAATTTTTTTTCTGATTCAAATGAA
TTCTACGTATGTATTATTTCCATGTTACAAAAAGAGCCGTCCTAGAGTCC
TTTACAAAAAAAAAGAGGTGTGAAGAAGAATTGGTGATATTGGAACAGGA
TATGACCAAATATCTACGTTACTACGGCAATATTTGCTTGGAATTAGAGC
AGCAAATTAAAGACACTGAGATACCGCAAAACAACGGACGGTGCTACGCA
AGAAGGCCTTTGCATGTAATTCAATTATCAAAACGCTTGTGACAAGCTAC
AACAGTATCGCTATCGATCTAGTTTTAGTTGACGATGTACTGCGTGGAGT
TTTTGAATGGAAAGTGAAACTTTTCACGCAAGCTTATCCCCCTGAATTTA
CAGTTGCTGTTCCCTCAAAATTTGAGTTTTCACCCTACGAAAACAGTGTT
TTACTTTTTCACGATATGAAGACAGATCTTTATGATGACCCTGAATATTT
GGAGCTGAAAAGAACGTGCCCTGTCCTCCCTGACATATCACCGTTGAGGA
TTCCAATGTTATTGAAGTCTAAAGCTGATAAGAAGAAGCTTTTACATGAC
CTTGTCAAATCAGTAGAAAAAAACAAAAAACATGACATAAGCAATTTGTT
GTCCTATCTCACAGTCGGATTCCAACGTCTCATGGAATCAACATATTTTG
AAAAGGTTCACCATCTTGTTAGAGTCGAACAACTTGCAGAATTTTGAAGG
AATAAAAAGAGAAATTCAGGCAATCGCTGCAAAAA
Gene-mRNA-Prot
This mRNA is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
MSTRG.14579MSTRG.14579Clytia hemisphaerica_ch_hm2_pilongene
The following polypeptide feature(s) derives from this mRNA:
Feature NameUnique NameSpeciesType
MSTRG.14579.1.p1MSTRG.14579.1.p1-proteinClytia hemisphaerica_ch_hm2_pilonpolypeptide
The following exon feature(s) are a part of this mRNA:
Feature NameUnique NameSpeciesType
MSTRG.14579.1.p1.exon5MSTRG.14579.1.p1.exon5Clytia hemisphaerica_ch_hm2_pilonexon
MSTRG.14579.1.p1.exon4MSTRG.14579.1.p1.exon4Clytia hemisphaerica_ch_hm2_pilonexon
MSTRG.14579.1.p1.exon3MSTRG.14579.1.p1.exon3Clytia hemisphaerica_ch_hm2_pilonexon
MSTRG.14579.1.p1.exon2MSTRG.14579.1.p1.exon2Clytia hemisphaerica_ch_hm2_pilonexon
MSTRG.14579.1.p1.exon1MSTRG.14579.1.p1.exon1Clytia hemisphaerica_ch_hm2_pilonexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0000122_pilongenomesc0000122_pilon:556102..558606 -