MSTRG.14573.2.p1 (mRNA) -

Overview
NameMSTRG.14573.2.p1
Unique NameMSTRG.14573.2.p1
TypemRNA
OrganismClytia hemisphaerica_ch_hm2_pilon (Jellyfish)

Sequence
The following sequences are available for this feature:

mRNA from alignment at sc0000122_pilon:371594..377955+

Legend: five_prime_UTRexonpolypeptideCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>MSTRG.14573.2.p1 ID=MSTRG.14573.2.p1|Name=MSTRG.14573.2.p1|organism=Clytia hemisphaerica_ch_hm2_pilon|type=mRNA|length=6362bp|location=Sequence derived from alignment at sc0000122_pilon:371594..377955+ (Clytia hemisphaerica_ch_hm2_pilon)
agagcgtccaacattttttgaaacctttaaaaatgttctgaaaTTGTTCT
GtttatttcaccattttgtgagtatttttgtgcaattccTAAACAATTGG
GTGTTctgtgtttcttaaaatttagcCCATCGAAactttgtgttcttata
tagtttgctctcaTGAAAAAAGCGTTAGTTATGCCTGGTACACACTACTA
CACCTCTTACTATCATTTAACgtttaattacaaaaattccGGGGGGCATT
GACCTTGACGACCGCCGGGGACGTGctgctggagtttgaaaaatggaccc
tgtcagatatagtaaatttgggaccatGTTAGAAAGAAAAATCGACTTTC
ACTCTGAAAAGTAaccaaaatgactaaaagtataaaaaattgcCCTgaga
atttacaaaatttgtgaCCCTCTTCCACCcgcccccaaaaaaaaaacata
acgaatttttctgaattttatgcATATCTATGCTCCTCCCTTTTCATTTT
AGCATACTGTATCCAACCACAATTCAAGAATGCACAACCATACACTCCAA
TTGATTCCACCAAACTTGATCAACTTCCAACGATGCTCAATGCCACCAAT
CCAGGTACCAAGTGAAAGATGCAGCACTGATAAAATAATCGTTTCTCCCT
CACACCTCAAACCCACAGACTCGCTAAATATCGTCgcagcaaaataaaaa
agctttaagtccaTTTATTGGAAAATTGAGTTACGACCATAccgctttta
gaaaaataagaattttttactttattttcagggtaaaaaagTTTAGGACA
AAAAAGCCTTGCCCAGAGTGGAAACAATtttggacttaaggcttttttaa
cacaaaaatcaATTGTTAGtggtttttcaggatttaaggaaaaataattt
aaaattgattttctcaaaacaacaaaaatttgatgttttgttaAATTATC
AGTAATTTTTCCGCCATAATGGAAGAAGGAAAGGTTCGAATCTGTATAGG
tgatcccttacgcaaatcaAACGTTTGCTTCTCTCAAGGTTGCACACATT
ATCatcatcccagctggcacacgacaTTGTTTTATCGTTtgtctaatgtt
cataacgtccatataataaTGTAAGATgagcgttgaaacaacgtcgtgta
cCAGCTGATATACTTCGATCTTGGTCCTAAAGGCTACACACAACTACAAT
CTCGTTCCATGCATATTATCAGCATATTATTGTCTACCAATGGCCTTATT
CAGTAACGTCGATAGAGGAATACATGGGAACGGAGTTGGGCCACAAAACT
AGTATCCTTATTTTCTAGGTATCTGACACCTTGGAACCACCATTTGACAG
TTTcaatttttatggtttttatcttcctacagttgactctcgctaattcg
aactcgaacggagAATCCTTATCTGGTCGAGttatagagagattcgaatt
atagaaaggaTTCAGAGGTTTTCTTCTTGACGGAGACTacaaacaagttc
gaattatagaaagattcaaaatagaagttcgaataagcgagaatGTACTG
TATTTTCAATTCAGGTCCGTATGGTTTCAGCAGTGCAACGATTTTGTATC
ATGGAAATATCCAAGAAAGTGTGAATAACCCAGTTATTGAGATCAAGAAT
GGAATGACTGGAACACAGATTCAAATTAGAGTAAGTTGAATTCATATTCC
CCTTATCAACTTTTAACAACGttcccgggggtactagggttgcgagctga
cgggggggggggggtgccatCCAACATTCGACCCTTGGACCCTCACCGGg
acaaaaaaggagaaaacaaaggacatttttgcgaattttacgacccttat
tgtgacaaatttgaccaaatttcgatctttccgggggtaaaaagttgaaa
ttttcccatttctcagacccttagtgggattgaaattagattttctgatt
atctcgacccttagcgggacttttgaaatccaaaaaagtacccttaaggg
cggcacataccgtaccctccattttcCTAAATTTGCCgaagaaccccccc
ccccagggacAAAGTAGGCTGCTTGTATCCTCTAACGAATTCGTGCtacg
gttttgtagaggtctgcgattcagactagggaCAACGTGATCGCCTTCTG
AGGGAgtctggtaatgaatttacaaggacACTTTTTTCCAGCGCATGGCA
TTTCTTTTTTGCTGCTACTAAATAAACAAAGCTAAATTTCACTCTATTCC
TTATGAGAAACATTTGTTTGAGCTTCTTAGGTGGACGTAGACGATGCTAT
CATCCGTCATATAGGGATAGTAAACGCAGGGAAATATAATGCGAAAAGTT
TACAGCTGCAGCTTACGGAAAAAACAGCGGCGGTAGCGTTTGGAACATTG
TAAACACCACTGCTTTCTCCCTTTTCAAATTAATCCGCCTCctaaattat
tccctttttaTTGATCATGTAtggacgataggatcgtcttaGGTGAAGTA
CAATACTCTCTTTAGGATTCTAATAGCTAAAtgacattaattttttttcg
caatgcaacatactccatcccaccaacctgaaacgctttctcgtgtctcc
accccatttttctttccatcaataaaagtgaaacttcacttttgtcccag
ggacaaaatcagcgtgtcttttggtatttccctcactttttgtcccatga
aacaaaaaaccatgggacacgcacttttttcttctgttggtgggatggag
ctagtctaagacgagtttcatctaagataGGTAGCTGTTgtcgtaaacac
agactctatccgccgcgcaacatattgcgttttataatatacaaactatg
ttatatcataataatatgtTATACGGACGATAACttttcgtgtccccaag
cctttacaaatgcaacaaaccatttcaaaaaAGCCCAAGAGGCACTCAAG
GCAAGGGTTCTAACGTTTTAAAAAGCGAGAAAGACGAAaggtccaaaatt
ttgaaaaatctgaccatttttttgCCTTAGCCCTTAAAATGAACAAgaac
tttcaagaaaatgcaccacAAGGGTCGATTTGTCGCCAAAGATATATGTA
ACGTAGTACAACTACTGTCAATAATCTTGAATCACCATCCAAGTGTATAG
AGACTTCGCTGTATTATAATCTTTCTTTTAAACATGATACTatctatatt
ttattttctaggtAGAAACCAAAGTAAACGGAGCTAGTATATGGTAAGTT
TTCATAATGCTCTTAAAAGTACTTTTAAACCCAACAAAAAGggttattta
aaggttttatttttacataagtgtcccAGTTTCATATCACTATCtgacac
atattttatatcaggacagtgtctgcctattgatttattatgctgatata
agcaaaaaaatgtttttctttccctttttctgatcaatcttgctctGCAT
CCGTGCCAATCCAACGTGAAAAAGcttatgaattaaaattgatgagtaag
caaacgatatcactcttatttaaaacaaaacatttaaaaagggaCGCCCC
CATTGGTTTACTTGGTTCAAGGCAAGGCTCgatttttcacccaaatttac
TTAAATTTGAAGGTATTTGCCCATTTCAAGGCACAAAATGTTCAGATTTT
CCAAACGTtgcccaaaaaaagtttttctcactttttttaaccGTTAGACC
AACCCTAACCATAACCAAGCCTCCTGGGCTtttttgaaatggtttgtttt
tctcACTTCGATATTTGgaacccttaagggccgcacatAAGTGCCTTATA
AACACCTACGAAATCAGCCAGTAAAGGACTTAATCTTCGGTTTgagattt
ccaaatttttgtatGCAGGCTAAAGAAGATGGAAAAGCAAAGGATCAAAA
GAAGATTTTGCCtccagaaaaaactttttgatcatttttttggtaaaatc
gaaaaaatttatcaaaattccccaaaaatctgatattctggtctgtaaaa
tgtcTTTCACTTaacaaaaatcattgaaaaactATGTGTTCAGGAGTTAT
ATGAgaaaacttttgcaaaagtttaaaaagtattGAAGGattatttcaaa
agatattCAACTTTGCTTTTCAGTGTTATGGATGATGTTCCACAAGATGG
TAGCGAAAACTGTGGAAAGGTGAGTAGGATGTGATAACACATTTCAGTCA
TATTCGTGTCACtgtattttgatacttttttccTTCATCTTActgcaatc
atggacaaaacatttgagacaaaggggatttccctgcgaaattttaaaca
ccacaaatgattttaaagcgcgtttaaactacagttggaaagtagagttt
taactttgaATCTTAACATGAGACTTAGACTTAGGACCTTAAGATCTCAG
GATTCAAAAGCTCAATATTGTTCCGATTAGGCtcggaatatagcctagaa
gccacccaACCCctcaaaaatctaaatattcAACGAAAGAAAGCGGAact
gctaaaatagcaattcacgcccgaactttaaattctaaaaaaacgttaaa
atacactaaaatctcaatatgtatcgaccatgattgtagcacGGCCTTAG
TATGAACACAGATAGCACAACAATACAAACATATGGTGTATTCTTTGGTA
CGGGGATCTGGAATAAGCGAATACACGCGTTACGAAATTATAGTCAAAAC
Gcgtgtgattactcgaaaaagttcacgtgattttattcccatgttacttg
ctttacaatttacaactgataactttattagtgtcaataaattcgaacca
atcagaaataaatgtcatgtaacaagcacacaaaaatttcgagtaaaagc
gtgatttagcttcagacttaaattttgcaacctgtgtattgggTGGaatc
ttttttcaacattcaataGCCGTCGGAATAGAGAGTATCAGTGTTGACAT
ATTCAAAAACGTCGATTACAATCAGATGGGAAGGGGTGTTGGAATAAGAA
TCCCCCGGGTATAAAACTTTCCTATAGTAAGTATAGTTGATTACTAGGGG
CCTTCCGTGAGTATCGTATATATATAATTGTGGTTTAGCCAGGgcaatac
aaaaaaatatacccAGTATACTGGGGCATGTAGAACCCTTTTTACATCAT
AAGGAAACAATTTCAAATGGTTTTCAAATTTCAGGGTCAAATTGATGTCT
GTTATACGCCAGCACGAGATGGAATGAAATTCGAATTTTATTGCACTGAA
AGTTGTGACTCGGATGATGTTGGATTTTATTATCGAATTGTCAAAAGTCC
AGTTGGaggtgaaaataaaatttttgaaagtttttaatgttatagtaggg
ggccaagtcaagttcaaaaacataccaaCGTCAAAACGATCgagacaaga
tttgacgtcaaatcacagtagagctgacagttagttggtcttaaagcggc
tgtatttctttgtgtaagagagttgttgtaatacgttttttttgctcaga
atttcatgctctatcagtTGGTACCAACcactttcgtttattttgacttt
tgaaaataagcttaTTTAATAACCCTTATTTTctcttgcagttttgccta
tggcgtcactattttggtcataaaaagtttccCCGgacctaatccgcgtc
ctccctctcaaaaatatattgtaatatactgttctttggaataaacTAAA
AAggttaggtcgtaaaaaagatgtcacggaaccccaggcttggaTCCCTA
CTACTAatggttttattttcacataggtgttcccgtttcatatcagatac
atatctcatatcgggacagtgtctgcctattgttatattgtgctgctata
agcaaaaaaaaagtcttatcttttcttctttctgacaAATCTttctccac
atccgtgtcaatctaatgtgaataagcttgtgaattaaaaatgATGAGTA
TAAGCAAAGAATATCACTCTTATCTAAAAGCTCTAGCAGCATCTGATTTA
TGTCTCTTAAAAACCCAAAAGTCATAAGGTGTCATATGGTGTTATCATAT
CTTACTATTGAATTATTATAGCTGACGATTTATGGTGTACAAACCTCCCA
CAGTATGATTGGCCCTCAAACTTACAACCGACGCCCCGAACTTTACCACC
CAGAGGTACCACACCGCCCAATCTAGATCAAGGCTCGAGCAGTATCGTCA
ACCAGGCTAAATACAGTTTCGTTTTAGCCTTGGTATCtgtagtttgtttg
tttttatggAAGTAATTTATTAAACGCTGAATGATTGTAATAAGCTGTTA
AATGGTTTAAGAATATGCATTAATAATTAGTAGATACCACACTCCTGTCT
AATAGGCACGAT

Coding sequence (CDS) from alignment at sc0000122_pilon:371594..377955+

>MSTRG.14573.2.p1 ID=MSTRG.14573.2.p1|Name=MSTRG.14573.2.p1|organism=Clytia hemisphaerica_ch_hm2_pilon|type=CDS|length=3204bp|location=Sequence derived from alignment at sc0000122_pilon:371594..377955+ (Clytia hemisphaerica_ch_hm2_pilon)
ATGCTCAATGCCACCAATCCAGGTCCGTATGGTTTCAGCAGTGCAACGAT
TTTGTATCATGGAAATATCCAAGAAAGTGTGAATAACCCAGTTATTGAGA
TCAAGAATGGAATGACTGGAACACAGATTCAAATTAGAgtAGAAACCAAA
GTAAACGGAGCTAGTATATGTGTTATGGATGATGTTCCACAAGATGGTAG
CGAAAACTGTGGAAAGGGTCAAATTGATGTCTGTTATACGCCAGCACGAG
ATGGAATGAAATTCGAATTTTATTGCACTGAAAGTTGTGACTCGGATGAT
GTTGGATTTTATTATCGAATTGTCAAAAGTCCAGTTGGagCTGACGATTT
ATGGTGTACAAACCTCCCACAGTATGATTGGCCCTCAAACTTACAACCGA
CGCCCCGAACTTTACCACCCAGAGGTACCACACCGCCCAATCTAGATCAA
GGCTCGAGCAGTATCGTCAACCAGGCTAAATACAGTTTCGTTTTAGCCTT
GGTATCtgtagtttgtttgtttttatggAAGTAAATGCTCAATGCCACCA
ATCCAGGTCCGTATGGTTTCAGCAGTGCAACGATTTTGTATCATGGAAAT
ATCCAAGAAAGTGTGAATAACCCAGTTATTGAGATCAAGAATGGAATGAC
TGGAACACAGATTCAAATTAGAgtAGAAACCAAAGTAAACGGAGCTAGTA
TATGTGTTATGGATGATGTTCCACAAGATGGTAGCGAAAACTGTGGAAAG
GGTCAAATTGATGTCTGTTATACGCCAGCACGAGATGGAATGAAATTCGA
ATTTTATTGCACTGAAAGTTGTGACTCGGATGATGTTGGATTTTATTATC
GAATTGTCAAAAGTCCAGTTGGagCTGACGATTTATGGTGTACAAACCTC
CCACAGTATGATTGGCCCTCAAACTTACAACCGACGCCCCGAACTTTACC
ACCCAGAGGTACCACACCGCCCAATCTAGATCAAGGCTCGAGCAGTATCG
TCAACCAGGCTAAATACAGTTTCGTTTTAGCCTTGGTATCtgtagtttgt
ttgtttttatggAAGTAAATGCTCAATGCCACCAATCCAGGTCCGTATGG
TTTCAGCAGTGCAACGATTTTGTATCATGGAAATATCCAAGAAAGTGTGA
ATAACCCAGTTATTGAGATCAAGAATGGAATGACTGGAACACAGATTCAA
ATTAGAgtAGAAACCAAAGTAAACGGAGCTAGTATATGTGTTATGGATGA
TGTTCCACAAGATGGTAGCGAAAACTGTGGAAAGGGTCAAATTGATGTCT
GTTATACGCCAGCACGAGATGGAATGAAATTCGAATTTTATTGCACTGAA
AGTTGTGACTCGGATGATGTTGGATTTTATTATCGAATTGTCAAAAGTCC
AGTTGGagCTGACGATTTATGGTGTACAAACCTCCCACAGTATGATTGGC
CCTCAAACTTACAACCGACGCCCCGAACTTTACCACCCAGAGGTACCACA
CCGCCCAATCTAGATCAAGGCTCGAGCAGTATCGTCAACCAGGCTAAATA
CAGTTTCGTTTTAGCCTTGGTATCtgtagtttgtttgtttttatggAAGT
AAATGCTCAATGCCACCAATCCAGGTCCGTATGGTTTCAGCAGTGCAACG
ATTTTGTATCATGGAAATATCCAAGAAAGTGTGAATAACCCAGTTATTGA
GATCAAGAATGGAATGACTGGAACACAGATTCAAATTAGAgtAGAAACCA
AAGTAAACGGAGCTAGTATATGTGTTATGGATGATGTTCCACAAGATGGT
AGCGAAAACTGTGGAAAGGGTCAAATTGATGTCTGTTATACGCCAGCACG
AGATGGAATGAAATTCGAATTTTATTGCACTGAAAGTTGTGACTCGGATG
ATGTTGGATTTTATTATCGAATTGTCAAAAGTCCAGTTGGagCTGACGAT
TTATGGTGTACAAACCTCCCACAGTATGATTGGCCCTCAAACTTACAACC
GACGCCCCGAACTTTACCACCCAGAGGTACCACACCGCCCAATCTAGATC
AAGGCTCGAGCAGTATCGTCAACCAGGCTAAATACAGTTTCGTTTTAGCC
TTGGTATCtgtagtttgtttgtttttatggAAGTAAATGCTCAATGCCAC
CAATCCAGGTCCGTATGGTTTCAGCAGTGCAACGATTTTGTATCATGGAA
ATATCCAAGAAAGTGTGAATAACCCAGTTATTGAGATCAAGAATGGAATG
ACTGGAACACAGATTCAAATTAGAgtAGAAACCAAAGTAAACGGAGCTAG
TATATGTGTTATGGATGATGTTCCACAAGATGGTAGCGAAAACTGTGGAA
AGGGTCAAATTGATGTCTGTTATACGCCAGCACGAGATGGAATGAAATTC
GAATTTTATTGCACTGAAAGTTGTGACTCGGATGATGTTGGATTTTATTA
TCGAATTGTCAAAAGTCCAGTTGGagCTGACGATTTATGGTGTACAAACC
TCCCACAGTATGATTGGCCCTCAAACTTACAACCGACGCCCCGAACTTTA
CCACCCAGAGGTACCACACCGCCCAATCTAGATCAAGGCTCGAGCAGTAT
CGTCAACCAGGCTAAATACAGTTTCGTTTTAGCCTTGGTATCtgtagttt
gtttgtttttatggAAGTAAATGCTCAATGCCACCAATCCAGGTCCGTAT
GGTTTCAGCAGTGCAACGATTTTGTATCATGGAAATATCCAAGAAAGTGT
GAATAACCCAGTTATTGAGATCAAGAATGGAATGACTGGAACACAGATTC
AAATTAGAgtAGAAACCAAAGTAAACGGAGCTAGTATATGTGTTATGGAT
GATGTTCCACAAGATGGTAGCGAAAACTGTGGAAAGGGTCAAATTGATGT
CTGTTATACGCCAGCACGAGATGGAATGAAATTCGAATTTTATTGCACTG
AAAGTTGTGACTCGGATGATGTTGGATTTTATTATCGAATTGTCAAAAGT
CCAGTTGGagCTGACGATTTATGGTGTACAAACCTCCCACAGTATGATTG
GCCCTCAAACTTACAACCGACGCCCCGAACTTTACCACCCAGAGGTACCA
CACCGCCCAATCTAGATCAAGGCTCGAGCAGTATCGTCAACCAGGCTAAA
TACAGTTTCGTTTTAGCCTTGGTATCtgtagtttgtttgtttttatggAA
GTAA
Gene-mRNA-Prot
This mRNA is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
MSTRG.14573MSTRG.14573Clytia hemisphaerica_ch_hm2_pilongene
The following polypeptide feature(s) derives from this mRNA:
Feature NameUnique NameSpeciesType
MSTRG.14573.2.p1MSTRG.14573.2.p1-proteinClytia hemisphaerica_ch_hm2_pilonpolypeptide
The following exon feature(s) are a part of this mRNA:
Feature NameUnique NameSpeciesType
MSTRG.14573.2.p1.exon1MSTRG.14573.2.p1.exon1Clytia hemisphaerica_ch_hm2_pilonexon
MSTRG.14573.2.p1.exon2MSTRG.14573.2.p1.exon2Clytia hemisphaerica_ch_hm2_pilonexon
MSTRG.14573.2.p1.exon3MSTRG.14573.2.p1.exon3Clytia hemisphaerica_ch_hm2_pilonexon
MSTRG.14573.2.p1.exon4MSTRG.14573.2.p1.exon4Clytia hemisphaerica_ch_hm2_pilonexon
MSTRG.14573.2.p1.exon5MSTRG.14573.2.p1.exon5Clytia hemisphaerica_ch_hm2_pilonexon
MSTRG.14573.2.p1.exon6MSTRG.14573.2.p1.exon6Clytia hemisphaerica_ch_hm2_pilonexon
MSTRG.14573.2.p1.exon7MSTRG.14573.2.p1.exon7Clytia hemisphaerica_ch_hm2_pilonexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0000122_pilongenomesc0000122_pilon:371594..377955 +