MSTRG.14333.3.p1 (mRNA) -

Overview


Name	MSTRG.14333.3.p1
Unique Name	MSTRG.14333.3.p1
Type	mRNA
Organism	Clytia hemisphaerica_ch_hm2_pilon (Jellyfish)

Sequence

The following sequences are available for this feature:

mRNA from alignment at sc0000119_pilon:72122..75499-
coding sequence from alignment at sc0000119_pilon:72122..75499-

mRNA from alignment at sc0000119_pilon:72122..75499-

Legend: exonfive_prime_UTRpolypeptideCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

>MSTRG.14333.3.p1 ID=MSTRG.14333.3.p1|Name=MSTRG.14333.3.p1|organism=Clytia hemisphaerica_ch_hm2_pilon|type=mRNA|length=3378bp|location=Sequence derived from alignment at sc0000119_pilon:72122..75499- (Clytia hemisphaerica_ch_hm2_pilon)
AATTGATATTGAAGGGAAACCACGAATAACCAAACAAGATGTCGGCCATT
ATGATTTCATACCAATGGGATAGCCAACCAGAAGCAATCCGAATCAAAGA
TGCTCTAGAAGCTGATGGATATGACGTTTGGATGGATTTGGATGATATGA
GGGGAAATATTTACCAAAAGATGGCTGAAGGTGATTACTAGATAGACGTT
TTTTTATAAGAACAAACTACATAAGAACATAAGGCTTCGATGGCCAAAAT
GTTAAGAACAAGTTAAGAACATTTTAAGGCTTTGAGGACCCTAAAACACA
AAATTTCTTAAGACAATAGACACGAATACCCTCAAAATGGTGAAAATAAG
AACATTTTAAAAATACTTTTAGGCTAAAAACTCAAAAAGTTAAGAACATC
CAAAAAACTTTGCATGTTCTTATACAAGAAAAACGTGTAGATGATTTGAT
CGAAAGTTCAGAATGAATTGGGAATGAAATTTTGGAGGAGTTCATTGGTT
TCTAGGCTATTTTCTTTGCTATATTTAAATATTTTTGGATTCTGAGATCC
TCTCCTTGTCTCGTGCCAAAGCCTAAGATTAACTTTACATTCCAGAAGTA
AAATAGAGAAATTCAAAAATCATTTAGTAGTCCTTTTTTATCGAATATTA
TCATTTTGAGAACATCCTTGAATGATGCGAATACAGGGCTAGGTCGCGAT
ATATGTGTGTCTGAAAATGTCGTTGCTTTTCACGTCTAATGGAATAAATT
GACGTACGGCAAGTGAGAATTGTCATGTATGAAATCGGCAATTTCTCTCT
CAATACGAAAATTTCATACTATCATACTACAGTCAGTAAAACATAACGGG
ATAATGCTCTTCCACATGCTATGATTGTGTTACGTTATTGTATAAAATCA
TTGATTGAACGTTAACATAAACTGTCTCTTCTATACTATACAGAAAATCA
GCGATATCCCCGTGGCTGAATTTCTTGGGGCGAATGGGGCAATGTGTGGC
GAGTTGTGGCAATAATATCAGCCACGGGGATATCGCTGATTTTCTGTATA
GTATAGAAGAGACAGTTTATGTTAACGTTCAATCAATGATTTTATACAAT
AACGTAACACAATCATAGCATGTGGAAGAGCATTATCCCGTTATGTTTTA
CTGACTGTAGTATGATAGTATGAAATTTTCGTATTGAGAGAGAAATTGCC
GATTTCATACATGACAATTCTCACTTGCCGTACGTAAGTTTATTCCATTA
GACGTGAAAAGCAACGACATTTTCAGACACACATATATCGCGACCTAGCC
GAATACAGGGTGTCCCTAATTAAAGTATCGAGTTTGAACATGCGATTGAG
TAGAAAAGTTTGTGTGTGTTATCGCTAAAATATAAGAACGTTCTCCATCA
CACAGGCTTATTACAAAAGGTAGTTACAACGTATAAATTAATCGTAATGA
CAAAGAAAAAAGAGGGAGAGCTTAAAATACAATTTTGTGAACACGCACAT
AAACTTTCTACTCATAGTTGTGTTTCGACTCGATACTTTAATTAGGGACA
CCCTGTAGTATGTTAAAGATTCCAGAAAACACGCCCTAGTATTGAGAATG
CAGAATGTAAGGAATGACTGTTTATTTTTTTCAGAGTCTATTAGTTGCCT
ATCAGCTGTGTTTTAAACATTCTTTTATTTGAATTCTCTATTGATAAACA
TCTTTTGTTAAAGTTTCTATTATGTTTAAACCTATAAATAAGCAATTCCC
GGTGGGGCTTCCTAGTGGCTGCCTATATCAGAGTCTATAGACCAAGAGTA
AGGCCTAAGAGCCTTGAGCTGTCTATTGTGTAGACTAATTAGTTGACGGA
TATGCCTACGATTTTCCTATTTTTCCGACCCTTAGTAGGACTGAAATTTG
ATTTTCTGATTTTTCCGACCCTTAGCAGGACTTTGGAAGTATAAGGTACC
CTTAAGGGTGGCACATACCATACCCTCCATTTGCCTAAGTAACCCCCCCT
GGGTCTCCTTGATTTGAAAAACTTACAAGATTCGTTACATTTTCTTCACA
GGTGTTGAGAATGCTGCTGTGATTCTAGTATGCATGTCAACCAAATATGA
AAATTCGGTCAATTGTAATCGAGAATTGCAATTTTCTCAAGACAAACGAA
AACAACTGATTCCCATCATGATCGAAGCTGGATACAGACCAGGTAAAGTT
ATATCATGGGCCTCGTCAACAGGAGGGGGTGGGGGCGTGGGGCGTGCCCC
TCCCCTTTTTTGCAGACCCTGCCATATATTTTTTTAAAGTTACTATTTTA
AGCTGGTTTGAGATTTATGTACATTAGAACAATAAAACTATTATTATCCC
CAATTAGGTAACGTTTTAAGGTGTTTTGAGGGTGTAAAAAGTGAAAAATT
TTCTCTGTTGCCCACCAGGGTCGCGATATTTTTTCCCAGAATATTGCCCC
CCCCCCCTTCAACTCAAAATGGCTCGCCGGGGCCCATGAATATCTTGATA
AAACAACCCTGTATCATTGAGTGACCCAATAAGAGTTGTTTGTCAAACTA
ATGATAAGATGAAGAGGTAAATGGAAAGGAGTTGTCTTTAAAATGACTTG
TCTTTATTAAGAGGCAATTTAAAAAAGCTATTCACTGGGGCAACCCAGCT
GGCACACAACGTTGTTTCAACGTTCATCTAACGTTAAATGGACGTTAGAT
AAACGTCGAAAAAACGTTGTGTGCCTGCTGGGAAGTCTTTTACCGATTTT
TCTCGTAAGTAGAGGGTCTCAAAAGACGTTTTAAATTCCTGTAAACCCCT
GGTACATAACTCTAACCTACTTAGGACCTTTGCAGATGCGAAAGCTAGTA
TATGGAAATTTTCTTTGATACCTTTTCTCTAGCTGTCTACCCGAAGGTAG
GGGAGGGCGCCACTACTTTCCCTGGATTCCTCCATTTACCCTTGATCCGT
CTCTATAGTTGCTGAGCATCAAGCAGAGAGGCATCAAATACCATTATGGG
AATCTTTGGTATGACCCGGCTGGGAATCGAACCCACAACTTTGGGCACCG
TAGCTGGATGCTCTACCACTACACTACACGGTCGTTTAACATTGCACTAT
GGTCGATTTGCTATATGTGAAAGCTAGTACTCTGACTTTCTTTGATACCA
ATTTTTGTCCTGGTTTCTCAAATACTTACAAGACTGATTTAAATTGTTAT
TTCAGGTGGTGCTCTTGGTTTGATCATTGCTGGTCTTAAATATGTCGACT
TCAGCAACCCTGGTGATTTTGACGATAAGATGGTGGAACTTAGAGATGAA
ATTACTCATTACTGCAAACCAACACTACAGCCAACGGAATCTGCTCCAAA
AGCCGCTTCGGAAACAGCCACAACAGGT

Coding sequence (CDS) from alignment at sc0000119_pilon:72122..75499-

>MSTRG.14333.3.p1 ID=MSTRG.14333.3.p1|Name=MSTRG.14333.3.p1|organism=Clytia hemisphaerica_ch_hm2_pilon|type=CDS|length=630bp|location=Sequence derived from alignment at sc0000119_pilon:72122..75499- (Clytia hemisphaerica_ch_hm2_pilon)
GTGGTGCTCTTGGTTTGATCATTGCTGGTCTTAAATATGTCGACTTCAGC
AACCCTGGTGATTTTGACGATAAGATGGTGGAACTTAGAGATGAAATTAC
TCATTACTGCAAACCAACACTACAGCCAACGGAATCTGCTCCAAAAGCCG
CTTCGGAAACAGCCACAACAGGTATGTCGGCCATTATGATTTCATACCAA
TGGGATAGCCAACCAGAAGCAATCCGAATCAAAGATGCTCTAGAAGCTGA
TGGATATGACGTTTGGATGGATTTGGATGATATGAGGGGAAATATTTACC
AAAAGATGGCTGAAGGTGGTGCTCTTGGTTTGATCATTGCTGGTCTTAAA
TATGTCGACTTCAGCAACCCTGGTGATTTTGACGATAAGATGGTGGAACT
TAGAGATGAAATTACTCATTACTGCAAACCAACACTACAGCCAACGGAAT
CTGCTCCAAAAGCCGCTTCGGAAACAGCCACAACAGGTATGTCGGCCATT
ATGATTTCATACCAATGGGATAGCCAACCAGAAGCAATCCGAATCAAAGA
TGCTCTAGAAGCTGATGGATATGACGTTTGGATGGATTTGGATGATATGA
GGGGAAATATTTACCAAAAGATGGCTGAAG

Gene-mRNA-Prot

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type
MSTRG.14333	MSTRG.14333	Clytia hemisphaerica_ch_hm2_pilon	gene

The following exon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type
MSTRG.14333.3.p1.exon2	MSTRG.14333.3.p1.exon2	Clytia hemisphaerica_ch_hm2_pilon	exon
MSTRG.14333.3.p1.exon1	MSTRG.14333.3.p1.exon1	Clytia hemisphaerica_ch_hm2_pilon	exon

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type
MSTRG.14333.3.p1	MSTRG.14333.3.p1-protein	Clytia hemisphaerica_ch_hm2_pilon	polypeptide

Position

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
sc0000119_pilon	genome	sc0000119_pilon:72122..75499 -

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MSTRG.14333.3.p1 (mRNA) -