MSTRG.14306.4.p1 (mRNA) -

Overview
NameMSTRG.14306.4.p1
Unique NameMSTRG.14306.4.p1
TypemRNA
OrganismClytia hemisphaerica_ch_hm2_pilon (Jellyfish)

Sequence
The following sequences are available for this feature:

mRNA from alignment at sc0000118_pilon:627026..631038+

Legend: exonpolypeptideCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>MSTRG.14306.4.p1 ID=MSTRG.14306.4.p1|Name=MSTRG.14306.4.p1|organism=Clytia hemisphaerica_ch_hm2_pilon|type=mRNA|length=4013bp|location=Sequence derived from alignment at sc0000118_pilon:627026..631038+ (Clytia hemisphaerica_ch_hm2_pilon)
ctacggAAAATCCCGTTCATGATTATCGAGCAGGGGTCAAGTATCGGTGG
GACCTGGTGGTGGAATAAATACCCTGGGTGCGCATGTGATGTTCCGGCAT
ATCAGTATAGTTTTTCGTTCTTTAAACATGAATGGTCTTGCCCGAATCCA
GGTCAAGCAGAAACTTTGGCTTATATAGAAAAACTCGCTGATCATTATGG
TTTGCATGAACATATTAAACTTGATACTAAAGTGACCGAATGTGTTTTTG
ATGATGAATACCAGGTTTGGATGGTTTCTACTTCTAAGAAGGAAACTATC
ACGTGTTCACATCTAGTATCAGCCATTGGTGCGTTGAACATACCAAAATA
TCCTGATATCCCGGGTATTGATGATTTTGCCGGTGATTCTATGCATACAT
CTCGCTGGCCAATCGGTTATGATTTAACAGGAAAACGAGTAGCTGTTGTT
GGTACCGGATGTTCGGCAGCTCAACTTATACCGAGTATTGTCGGTAAAGT
TCGGGAGTTGTTCGTTTTTCAGCGATCGGCTGGATTAGTTTTTCCACCTC
TGTGTATCCAAACACCGAAATCTATTCAAGGAAACGATCAGTTAAAATAT
ATGTGGAATCtttttttACGTTGTTTAGGCTTTATAATGGGTGACTTAAC
GGTCAAGTACATTTATACAACTACTTCAAATTTCTTAACACGAGTAGTGC
AAGATGCTATCGTCAAGGATATGTCAAACCAAATTGATTCTGAGGAACTT
AGACAGAAATTAATTCCCAAGGAAGCTCTGGGTACTAAGCGAGGCATCCT
TAGGGACGATTACTTACCATGCTTTAATAATCCTAAAGTGAAACTTGTAA
ATCAGAAAATATCTTGTATCACTCAAACCGGTATCGAAACTAATGACGCT
ACATCGTATTCGGTTGATACCGTTATTTATGCAACAGGTTTTGATTCACT
CGGCAGCATGAAGAATTTGTGTATTTCACGGAACGGGAAAACGTTAACGA
AATCATGGAATAATTGCCCGAACGCGTATAATGGTGTTATGTGCCCTGGG
TTTCCAAATTTCTTTATCTTGTTGGGACCGAATACTGTGCtaggtaagaa
atattttttgtcgaGCCAAAACTTAGTCACCTCTAAAGGGGTTCATATTT
CCTGAGCAAAGGGTCCGTAGTAAAGTACCCATTAGGTGATAAATTGagaa
aaagtaattaaaatctgtgtcaaaaaggtgtgcagtgttttgatttttga
ttatatgtgttttttttagTAGTCAAGCAGAGTAAAATTTTTTCGACACA
GACTTTAATTGAGTTCGTCTTTCTGGTAATTTCTCAACCGGCGACAttaa
ggcgtacaaactttcgtgggctgaaactttcgcgaggtcgaaaaatcgcg
aaatttacgatATTTACTGTCACGTATTTGAcggcaaaatctttttttgc
gagcataaactttcgcaaatcaaGACATAGAAATTAAAATgttcacatga
aaaaatagctACTTAAAggttggattggcttgaaacttttgtcttttgac
ttaTTTGTCTTTTAACAGGCTAAAAAGTATTCGACAATATTCGGTATAAG
CTGAGCAAccttattcaaagtttgaagtttaacagattttctattttgtc
aagaatttttaaagacatttacttttgtgaaaaatcgcgaaagcttctgc
tcgcgaaagtttgtacgcttaaAGTTTGTACCCTGTGTTCAgacaaaatt
ttagaattttttgtcCCTCACATTTAAAATTATTCTCCCATAAGTTCTAA
GGGTGAAATTACAGATATTTTGGGAGTTGTCTGGAATtatattttccctt
tttccagCCCACAATTCAGTGTTGTTTATGGTTGAATGTCAAGTGAATTT
TATGTTGGATTTGATctcgaaaacaatcaaaagaaagGCCAAGACTGTTG
AggtatgaatttgaaaatttttaaaaaaattttagagTGTTTTCTGAGAA
GAACTTTTGgtaggaaaaagtttttcacattGCCTCAAAACAGGCATttt
aaggcatgtccaaattttctttaatttttaaacaccaatagcactcgcca
agaggtgttcattcatacctttttggaagcgtattagggtgtagaatatg
aaaagtgctgttcaataattgttttgcttgcctaaataaagatatatgaa
taaatattgcaaaaaattgcgttttttacttatttctgctgacgtcatca
aatttctaaaaaaaattttgatccaAAATGTACTTTTCAATATTCtcttg
cattttgcaaaatttcagcatataaaattcgggcaaactggggaggcaat
tttagaagatttagattttggcgccccctatgaaaagtaaactttttgaa
aaataacgcAAGAGAATGAATgagtattttctctttttttggctgaaaaa
aactGCCATATCTAAGGTATAAAAGAGCATAGGAGGCATAGTGTGAAccc
ccccTTCTTTAAGGGGGATCCAACTTTTCAAgaaaggctttatagggggg
atAATAGATTTTCTGAGTAAAATGGGGGATAACaactttttggtaaaaat
atgtattatatCTTAAACTGGTCaaagaacaacaaaattttggccctttt
cgcgaaagtaaatgtctttaaaaattccaggaagggccattcgcgaaagt
ttatgctcgcgaaaaattgttaacaaaatagaaaatctgtaaaacttcaa
actttgaataaaatgtaagttttatggcactttttagcctgctaaaagac
taataagtcaaaggacaaatgtttcaagccaacccaagaagtatttgtcc
ctctaagccattttttcatgtgaaaattctcaattttacgtcttgattcg
cgaaagtttatgctcgcgaaaaatatttttccattaaGTTCGCGATTCTT
CGTCCatgcgaaagtttctgttcgcgaaagtttgtacgcctaatgTACTT
ACCCTTTCTTACCAtataaatttgaattgtttGGTATTAAACGATTTGTG
AACCACCATTGTAGTTAATGCCAGgttcgaaaaaatttttaaatatgggg
GATGCACATataggggggatgaaatataaaTGCACACTACGtgggcgccg
aaattagtaattaGAGGCGTCTTTTTACTCCCTTTGTATTTTGGCGCCCC
TTAGAAAAACCtacgctgggggggggggcattttcccattttttactccc
ccccctgccaccacgctacttcTGCCCAGGTTGGCGCACTACTTTGCTCA
TTTTCATCCATTTATCCAACCCAATGGCATGGCTTTCACTTTAACTCGtt
taaataaagcaaaaagtaacgcGTTTTGATTATTTGACTGACCAGGTCAG
ATAATCACATCCACCACGCATAACTTTAGAACAGAGATTGGTGAAATTGA
AGCTATAAAAGAATTTACTTGGCACCACGATGTCTCAGATCGAAAGGAAA
TGCTAAGTTGCTCCCACTCGGCTATTTgagataaattttttaaatgcttt
GCAGGTGAAGGAAGAGGCGAATACAGAATATCAGAACAACCTGCAAGATA
CGATGAAGAAGTTAACCTACACAGGCGAGAACGGATGTAAAAGTTGGTAC
GTCAACTCCAAAGGAATCAATTTTACGTTATGGCCGACGACTTGTACCTA
TTATTGGAACTCATTGCGGAACTTCAAAGTTGagcatttcattttcaaat
gaataaaatatttgatGAGTCATAGTTTTATGGAacaaatttattgtttt
cattttttttttacattctaggaattttttaatcatgttggattttagaa
aaattttatcattatatTCCAATTTTCCAGCTAATATTTTgactgttttc
gaaaagatCTTAGAGATAGCTTCGCTTGTCCTAGATGCCTGATTTAGCTC
CAtaagtttttcagattttcagtaATACAAATACAATTTTATGATTTGAT
AGAAATAACGCCA

Coding sequence (CDS) from alignment at sc0000118_pilon:627026..631038+

>MSTRG.14306.4.p1 ID=MSTRG.14306.4.p1|Name=MSTRG.14306.4.p1|organism=Clytia hemisphaerica_ch_hm2_pilon|type=CDS|length=4158bp|location=Sequence derived from alignment at sc0000118_pilon:627026..631038+ (Clytia hemisphaerica_ch_hm2_pilon)
ctacggAAAATCCCGTTCATGATTATCGAGCAGGGGTCAAGTATCGGTGG
GACCTGGTGGTGGAATAAATACCCTGGGTGCGCATGTGATGTTCCGGCAT
ATCAGTATAGTTTTTCGTTCTTTAAACATGAATGGTCTTGCCCGAATCCA
GGTCAAGCAGAAACTTTGGCTTATATAGAAAAACTCGCTGATCATTATGG
TTTGCATGAACATATTAAACTTGATACTAAAGTGACCGAATGTGTTTTTG
ATGATGAATACCAGGTTTGGATGGTTTCTACTTCTAAGAAGGAAACTATC
ACGTGTTCACATCTAGTATCAGCCATTGGTGCGTTGAACATACCAAAATA
TCCTGATATCCCGGGTATTGATGATTTTGCCGGTGATTCTATGCATACAT
CTCGCTGGCCAATCGGTTATGATTTAACAGGAAAACGAGTAGCTGTTGTT
GGTACCGGATGTTCGGCAGCTCAACTTATACCGAGTATTGTCGGTAAAGT
TCGGGAGTTGTTCGTTTTTCAGCGATCGGCTGGATTAGTTTTTCCACCTC
TGTGTATCCAAACACCGAAATCTATTCAAGGAAACGATCAGTTAAAATAT
ATGTGGAATCtttttttACGTTGTTTAGGCTTTATAATGGGTGACTTAAC
GGTCAAGTACATTTATACAACTACTTCAAATTTCTTAACACGAGTAGTGC
AAGATGCTATCGTCAAGGATATGTCAAACCAAATTGATTCTGAGGAACTT
AGACAGAAATTAATTCCCAAGGAAGCTCTGGGTACTAAGCGAGGCATCCT
TAGGGACGATTACTTACCATGCTTTAATAATCCTAAAGTGAAACTTGTAA
ATCAGAAAATATCTTGTATCACTCAAACCGGTATCGAAACTAATGACGCT
ACATCGTATTCGGTTGATACCGTTATTTATGCAACAGGTTTTGATTCACT
CGGCAGCATGAAGAATTTGTGTATTTCACGGAACGGGAAAACGTTAACGA
AATCATGGAATAATTGCCCGAACGCGTATAATGGTGTTATGTGCCCTGGG
TTTCCAAATTTCTTTATCTTGTTGGGACCGAATACTGTGCtagCCCACAA
TTCAGTGTTGTTTATGGTTGAATGTCAAGTGAATTTTATGTTGGATTTGA
TctcgaaaacaatcaaaagaaagGCCAAGACTGTTGAgGTGAAGGAAGAG
GCGAATACAGAATATCAGAACAACCTGCAAGATACGATGAAGAAGTTAAC
CTACACAGGCGAGAACGGATGTAAAAGTTGGTACGTCAACTCCAAAGGAA
TCAATTTTACGTTATGGCCGACGACTTGTACCTATTATTGGAACTCATTG
CGGAACTTCAAAGTTGagcatttcattttcaaatgactacggAAAATCCC
GTTCATGATTATCGAGCAGGGGTCAAGTATCGGTGGGACCTGGTGGTGGA
ATAAATACCCTGGGTGCGCATGTGATGTTCCGGCATATCAGTATAGTTTT
TCGTTCTTTAAACATGAATGGTCTTGCCCGAATCCAGGTCAAGCAGAAAC
TTTGGCTTATATAGAAAAACTCGCTGATCATTATGGTTTGCATGAACATA
TTAAACTTGATACTAAAGTGACCGAATGTGTTTTTGATGATGAATACCAG
GTTTGGATGGTTTCTACTTCTAAGAAGGAAACTATCACGTGTTCACATCT
AGTATCAGCCATTGGTGCGTTGAACATACCAAAATATCCTGATATCCCGG
GTATTGATGATTTTGCCGGTGATTCTATGCATACATCTCGCTGGCCAATC
GGTTATGATTTAACAGGAAAACGAGTAGCTGTTGTTGGTACCGGATGTTC
GGCAGCTCAACTTATACCGAGTATTGTCGGTAAAGTTCGGGAGTTGTTCG
TTTTTCAGCGATCGGCTGGATTAGTTTTTCCACCTCTGTGTATCCAAACA
CCGAAATCTATTCAAGGAAACGATCAGTTAAAATATATGTGGAATCtttt
tttACGTTGTTTAGGCTTTATAATGGGTGACTTAACGGTCAAGTACATTT
ATACAACTACTTCAAATTTCTTAACACGAGTAGTGCAAGATGCTATCGTC
AAGGATATGTCAAACCAAATTGATTCTGAGGAACTTAGACAGAAATTAAT
TCCCAAGGAAGCTCTGGGTACTAAGCGAGGCATCCTTAGGGACGATTACT
TACCATGCTTTAATAATCCTAAAGTGAAACTTGTAAATCAGAAAATATCT
TGTATCACTCAAACCGGTATCGAAACTAATGACGCTACATCGTATTCGGT
TGATACCGTTATTTATGCAACAGGTTTTGATTCACTCGGCAGCATGAAGA
ATTTGTGTATTTCACGGAACGGGAAAACGTTAACGAAATCATGGAATAAT
TGCCCGAACGCGTATAATGGTGTTATGTGCCCTGGGTTTCCAAATTTCTT
TATCTTGTTGGGACCGAATACTGTGCtagCCCACAATTCAGTGTTGTTTA
TGGTTGAATGTCAAGTGAATTTTATGTTGGATTTGATctcgaaaacaatc
aaaagaaagGCCAAGACTGTTGAgGTGAAGGAAGAGGCGAATACAGAATA
TCAGAACAACCTGCAAGATACGATGAAGAAGTTAACCTACACAGGCGAGA
ACGGATGTAAAAGTTGGTACGTCAACTCCAAAGGAATCAATTTTACGTTA
TGGCCGACGACTTGTACCTATTATTGGAACTCATTGCGGAACTTCAAAGT
TGagcatttcattttcaaatgactacggAAAATCCCGTTCATGATTATCG
AGCAGGGGTCAAGTATCGGTGGGACCTGGTGGTGGAATAAATACCCTGGG
TGCGCATGTGATGTTCCGGCATATCAGTATAGTTTTTCGTTCTTTAAACA
TGAATGGTCTTGCCCGAATCCAGGTCAAGCAGAAACTTTGGCTTATATAG
AAAAACTCGCTGATCATTATGGTTTGCATGAACATATTAAACTTGATACT
AAAGTGACCGAATGTGTTTTTGATGATGAATACCAGGTTTGGATGGTTTC
TACTTCTAAGAAGGAAACTATCACGTGTTCACATCTAGTATCAGCCATTG
GTGCGTTGAACATACCAAAATATCCTGATATCCCGGGTATTGATGATTTT
GCCGGTGATTCTATGCATACATCTCGCTGGCCAATCGGTTATGATTTAAC
AGGAAAACGAGTAGCTGTTGTTGGTACCGGATGTTCGGCAGCTCAACTTA
TACCGAGTATTGTCGGTAAAGTTCGGGAGTTGTTCGTTTTTCAGCGATCG
GCTGGATTAGTTTTTCCACCTCTGTGTATCCAAACACCGAAATCTATTCA
AGGAAACGATCAGTTAAAATATATGTGGAATCtttttttACGTTGTTTAG
GCTTTATAATGGGTGACTTAACGGTCAAGTACATTTATACAACTACTTCA
AATTTCTTAACACGAGTAGTGCAAGATGCTATCGTCAAGGATATGTCAAA
CCAAATTGATTCTGAGGAACTTAGACAGAAATTAATTCCCAAGGAAGCTC
TGGGTACTAAGCGAGGCATCCTTAGGGACGATTACTTACCATGCTTTAAT
AATCCTAAAGTGAAACTTGTAAATCAGAAAATATCTTGTATCACTCAAAC
CGGTATCGAAACTAATGACGCTACATCGTATTCGGTTGATACCGTTATTT
ATGCAACAGGTTTTGATTCACTCGGCAGCATGAAGAATTTGTGTATTTCA
CGGAACGGGAAAACGTTAACGAAATCATGGAATAATTGCCCGAACGCGTA
TAATGGTGTTATGTGCCCTGGGTTTCCAAATTTCTTTATCTTGTTGGGAC
CGAATACTGTGCtagCCCACAATTCAGTGTTGTTTATGGTTGAATGTCAA
GTGAATTTTATGTTGGATTTGATctcgaaaacaatcaaaagaaagGCCAA
GACTGTTGAgGTGAAGGAAGAGGCGAATACAGAATATCAGAACAACCTGC
AAGATACGATGAAGAAGTTAACCTACACAGGCGAGAACGGATGTAAAAGT
TGGTACGTCAACTCCAAAGGAATCAATTTTACGTTATGGCCGACGACTTG
TACCTATTATTGGAACTCATTGCGGAACTTCAAAGTTGagcatttcattt
tcaaatga
Gene-mRNA-Prot
This mRNA is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
MSTRG.14306MSTRG.14306Clytia hemisphaerica_ch_hm2_pilongene
The following exon feature(s) are a part of this mRNA:
Feature NameUnique NameSpeciesType
MSTRG.14306.4.p1.exon1MSTRG.14306.4.p1.exon1Clytia hemisphaerica_ch_hm2_pilonexon
MSTRG.14306.4.p1.exon2MSTRG.14306.4.p1.exon2Clytia hemisphaerica_ch_hm2_pilonexon
MSTRG.14306.4.p1.exon3MSTRG.14306.4.p1.exon3Clytia hemisphaerica_ch_hm2_pilonexon
The following polypeptide feature(s) derives from this mRNA:
Feature NameUnique NameSpeciesType
MSTRG.14306.4.p1MSTRG.14306.4.p1-proteinClytia hemisphaerica_ch_hm2_pilonpolypeptide
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0000118_pilongenomesc0000118_pilon:627026..631038 +