MSTRG.14302.1.p1 (mRNA) -

Overview
NameMSTRG.14302.1.p1
Unique NameMSTRG.14302.1.p1
TypemRNA
OrganismClytia hemisphaerica_ch_hm2_pilon (Jellyfish)

Sequence
The following sequences are available for this feature:

mRNA from alignment at sc0000118_pilon:551817..558181+

Legend: five_prime_UTRexonpolypeptideCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>MSTRG.14302.1.p1 ID=MSTRG.14302.1.p1|Name=MSTRG.14302.1.p1|organism=Clytia hemisphaerica_ch_hm2_pilon|type=mRNA|length=6365bp|location=Sequence derived from alignment at sc0000118_pilon:551817..558181+ (Clytia hemisphaerica_ch_hm2_pilon)
taattttgtatttcagataaaaaaaacttaaaatgggaTGTGCATTCTGT
AAAGATCCAAATCAGTCTAATAAAAATGTAAGTATATTATGCATGTTGAT
TCATTTTTGTGGCTATGCATAAGATATttggcctaggggggggggctctt
tctgttcggaggtcaaactattggtaatagctcctgaaataatagagctt
ttgccgtgaaattttctgtaaattcctaacttttattttgcttcaaaata
aaaaaaaatttgacacttaaatattttcacaccttgagcatgatgacatt
tctgagtaaggtgtcacaaaaattgacacttttccaatacaaatttattt
ttaatgtcaaatatatcgtttaaaccgtaatttattgaatatttaggata
aaataagcattttaaactcaggcaactttagGCAacaatacaatagctat
ttataagaacaaaggaaattttcggtttttgttcactttgggcatgatga
gtgacgtcatcaaaaaatttttttttcaaaagttaccttacatgacaagg
atcttgtgtgccaaattttatccaaaaagacccactagatcaaaagttaa
gagGTGGttcaggaaaagcccccccccctagttctgaaccgcccctaaaa
gcctaggttgaatagggttaacttAGTGAGTTTTAACAATTATAAGTCAA
CAAAAACATGTATTTAATGTTTGTTATGGGTGTTATGCTCCAAAAATTCA
TGTGCATTGGAATTACTTTACCAATTCCTCTTTATTTAGACTACAGGCCA
CAGCCGCTAGCTTTCGAAAAGTAGTTTTTTCTTTGTCAAgtatataaaaa
gcaacatagtTCCAAAAACATTGCATAAATCTGATTAAAATTATGATAGT
CAAAACCAAAGTCCATTCACTTTAAGTGTACATTCTTGTGTGTGTTCTGA
TTCTTACTTTCCTTGCCATTTTTCGAACAATTGTTCAATTCTTtaatctt
tctaaaaaattgttgaaaactgttgaaaagaaaatttggagatcaaagat
ttatgaaaaaaaataatttcaaagatttttgttactcaaaacaaaaaata
aatgtgaacaaaataaaCTCTTTAAATCTTTTGATGCCAGAAACTTCACT
TTTAGGGTAAAAAGGTACTTTGAAACCTCCTGAGCCCCGCTATATTAATA
TACGCAATAATGATGAGTtccaataaggacgaaatgcatacaCCTGCTCT
Gctacccaaatctcctgagtgaatttagttggatagaaattttcatttct
tcacatataaatatatttttaaaaccataaacaataatatcatcatagta
taagaaagccgcggctggaatgataacatctggatttctgttgttctatc
tctgtatttgatgactatttgttgatcaagaaataagtaatgtagcatct
ttaatggtaaattttattggtttatcgttaatacttacttctcagtgcat
tttagacattaatgatatgcccttgataatacacttgcattataaaatca
ttgtgcaggaaagatcaacaataagaaatttaaacaagcacaaaatggct
gggctaaaagaactcaaaaattaataaagtgcctcgaaatgccttaacaa
tatttcagtgaaatctttttagaaatcaatgaaatagtaaATCAAGATac
ttctgtgaaaatttcaagccagcatcttcaaaatttatctttcaaactga
caggaaagttgtcattttcaatatcgtttccacaaaatacccctaaaata
tgtccaaaattagttttaagtgttctattgggtacagattcaaagatatc
tagcaataaaaaaactttttgtgagagaaaataagaaaaaattcaataaa
ctgacaatcttgatgttcttataaagctcggagacagagatagaacagca
attaactgagaagacaatgtggtacatattccagccgcggctttcttata
ctatgatatCATTGATGAGAATATTTTAGTAATTTGTTTGTTATCGCTTA
TATaatgtttataaataaatttaGATTATCTAGGATTTCAAAATATCTTA
TTTTTTAGGACTCTGGAGAACCTGATGAAAGATCAAGGCTATTAGACAAT
CAACATCAACCTTCCGCTACTAAACCTATCACGTAAGATTCATAatttgt
atagaggatgctttaacttgaattttgaactATCATACAtctaatttgaa
aaagtagttcgaaagttatttccaaaaaactgactttttttccatgtcga
aatttcaaaaaatcattaaaaacagcgagcaaacttttcttttaacaatt
accttctttacacataagaataccaaaaaatgcaactgtgctCATCAAAA
CTCGTTGCGGAATTTAAGAattatggtaaaacaagctattcccatgtggg
ataatatttttggaaaggctgaaaaaaaattttggaaatcttcAAGAGAG
TTTCAATGTtatgtgtgtgctatgtgagaaaatgtttgaaaaaaatagat
cactattcctcgactagttgctcaaagaacttgggtctgcatttaGTTAG
CTGGAattggaaatgttcatgacgtgcaaataagatagagaaactgttgg
caaaatataagataagagaaaaagcaataaaaaaacaatgaaattgtgtt
tttgtcattttgtcttatttatagcgtgattgctgtttttaatgattttt
tgaaatttcgacctggaaaaaaaagttagttttttaaaaataactttcga
actactttttcaaatttaatgtatgatagctcaaattcaagttaaagcat
cctctatacaataaagaaagaatgaacaaaaaagctaaatcctgaagctc
gcaatatctcgacaaagttgtatacttttttttggcgcacccggtatata
ttgcatgactgaaaataaataaattatgaattttctttttgatttacaGG
GATGACTCCAATTATCACTCTACAAATTCTATAACGAAAACAGACGAACA
GTCACAATTGAGTAGGATATTACACAAAACAGCACAGTATGTcgacactt
ttcaaaaaatatttcctttgtttttaaggCCGTTAAGGTAGAGTCTAAAA
ATCTGTGGAAGCCTTGAAAATTGTCtgatatttttgcatttttggatTTT
ACATACCCATTCCTGGCGTGGAGTCCGAATATATTGATTTTTCCCTCTGG
GGACAATAGtttttttGCCAAGTTGAGCTTGAGGCTAAAACATAGGGCCA
GTCTTGAGACCCCAAAAAAGAGTCCCATTTGGCTGAAATCTTACACAAAT
ACCTggtacaaaaatcaaaattctgattttttagCTTGGGGACAACATTG
TCCTAACACAAGGCTTAAATTTAAGTCAGCTTGTTGTTGACTTCATTAAC
TGAAGTGTTATATGCTTGCTTTTTAATGTggaacgttttttttttcattt
ttcaaagatttggtttttATGGGTTTGGAGGGGTTTCTGGCTTGCTCAGT
TTGGCATTCCAGTATTCAAGGTGAACCAGTGGTGCACATATTTGACTATA
ATATATCAATTTAAttcgaattttagaaatatAATAGACGTGTCAGCAAT
CGAACCTCACAGTATGGAACGTTCAGAATATATGGATAAGATGAGACATT
ATATGTAAGtttttttAAGAGCTTTTGTCCAAAAGCCCCTACACATACAC
CTTTTTAGAGGGGTGTGACCACCCTCTACGTCTATTTACATGAAAACTTG
TCAACTTAATTTAACTTTTATTCGTGGTCTGTGATGGTTTTGATCGCCTT
GATTGTTGATATAGGCTCGTTTTCTCTTGTGTTCTTTTCTATTACCGAAA
CATTTACAAGCACTTCCTTTTAAACCTTTCTTAGAGGGGAATGGGGAATG
GTTTGTTATCTTCGGTAAAAGGATAGCTCTTATTGCCAGCATTCTGTATG
AAGAATGAAATATTAACTTTACTGATACTTTACTTCTAAAATATCCTTTA
GAGAGAAGACTACGAACagtgatttcaatttttcaaaacaaaagcaactG
AATCAAGTTACACATGCTCCACTGAACATTTTATTAGCGCCCAACATCAG
TGCATCAGATATCAAATTAGTAAGTACAACTCATATTGGATTGTGGTACA
TTCttgtacatttttatcaaatcgATTATTTTCTAGTAGCGAGAAAGcat
gattcattttttgtttcttatcaTTACTGGTATTTGTCGAGGGTTGGCAT
AACTGTAAAATTAGAGCAGCACAAGGCTAGCACGAGCTAAGGTTAACAAA
TAATAGTGTGTTCTGCTCGAAAGTAAAACAACATCAAACTTCTCAGTCTC
CCCGTGGTATTACCAGATCTGGGCTATTACaaaaaaaGTGGAGCTTATAT
AACTGCGTTTATGATCTTGGAAATGTTTGTAACTAGGGATTTTTTCTACA
AATACTAACGActttcattcaaattcaattgCGTTTATGTTTTCAGATAA
CAGAAGCTAGTCACAACGTATCTGGAGCTTTATCACAAGCTAAAATCACG
TGTAGCGATAGTCTAGTGGAAAACTTCGATGTCGATAATTCACCAGTACC
TGTGGTGACGTAGCATTGTCTATTGGTAATGGGTAATTCTATTATCAATT
GGATCATTAGGTTGAAACGAATTCGAAATTATGATAATAATAAACAATTA
TTGAATGCACActtaattttcataaaatgacAAATCACCCTATTTGAGGA
GGAttttttttAGAGAaagattaaaataataattaatatacttggattat
tttttttttgaaagaattttgttatCTTGATGACTATATCAATTTAGAAT
CAAAAACGGTTGAAAAGGTCTAACACAGAACGCACAGAGAGACACCTGAC
ACCTTATGTTATTCGAAAGGGAAGCGACTGGGTTGTGAGGGTGGCCCAGA
AAGTCTTGCACTTTTTCAGCCTATAAGATTCCatcattttaaggaaaaac
aacAACTGTGGTTTAACTCAATAAAAAGTTTGTTGAACACTTGCACAATT
GATCTTTAGTTAGTTATACCATATATGTTTTGTTTTCACCTACTAGTCTT
GACGTCGTAAAATCATTGCATCCTTTTTCCATATCAAAAATACCGGAAAA
GcaggatttttgaattttgaaaattctggaTCCTGGATTCTCGGGTGTAC
CCGgtagtagactggagtcgtttataatgcatgtaatactaataataaac
acaaataatgatacgggatttagtttgtataaacgactggaagaatccgg
tgttccagccttatagatactgggcctagctacgcagaaacttgcgtagc
gagaaaacaatttatcaagcaacaacaaactctcaaaataaaatcaactc
aaatgaaacgtttttaacacacaaatccacacacattttattttcaagaa
ttttttttgagcgggaaaaaattttaattgcgatattgacactttttttt
tgtttggagttagtgcacaaaggtttctagacgactaaaatttacttttt
ttttgctttatttctaatatgtatgaattagtcgtctagcttgctagact
aaccCGGTAGAGAACATGATGCAATTCTGACTTAACGTTCTAGCAAAAGT
CGTAGGCGTCATCTAATACagaccaaaaacaaaaaaatgcgatCTCTGAT
TTTGAGCTATGAGTGACCTATGGTTTTTATTCAGTGTTTTCCCTCGATTG
TGCTGTTTCTCTAATCTCTTTTAGGCCTACTCAACattaataccttaagg
gaagaaatttttgcgggaagaaatttttaccgAATTTATTTTCACGGCTC
ACAGCACAAAATTCGgaagtttcgcggaatttaatttcgcggttgagaga
aTTTCTGGTTCACAATATTTTGTCCTAAATTtttaaaacctgaaaatatt
tgtgtttcgCGCAAattaatttcgcagatttgtCTGTaagtcgcgaaatt
aaattctccgaaaatttcttcccctaaaatttcttcccgcaaaaatttct
tcccttaattTTAGTAGAATttaatattttgtctttttgtatcAAAAGCA
TCTTAAATTTATATAGTTCAAATAGTTAAATGACCATAGTTAGCCAAGCT
TTCCTTTTTGCTGTTGAGactttttaatgcattttcacTCTTAGTAATTT
TCTGTGTTTATGGttttttttCTGTTCATCATGTGCTTTTATGTCAATGA
AATCATAAATGTCCTTAAGGCCCCATTACACCTAAGAATAAGGGGGAAGA
ATATATCTCTGCAGC

Coding sequence (CDS) from alignment at sc0000118_pilon:551817..558181+

>MSTRG.14302.1.p1 ID=MSTRG.14302.1.p1|Name=MSTRG.14302.1.p1|organism=Clytia hemisphaerica_ch_hm2_pilon|type=CDS|length=3114bp|location=Sequence derived from alignment at sc0000118_pilon:551817..558181+ (Clytia hemisphaerica_ch_hm2_pilon)
atgggaTGTGCATTCTGTAAAGATCCAAATCAGTCTAATAAAAATGACTC
TGGAGAACCTGATGAAAGATCAAGGCTATTAGACAATCAACATCAACCTT
CCGCTACTAAACCTATCACGGATGACTCCAATTATCACTCTACAAATTCT
ATAACGAAAACAGACGAACAGTCACAATTGAGTAGGATATTACACAAAAC
AGCACAaaatatAATAGACGTGTCAGCAATCGAACCTCACAGTATGGAAC
GTTCAGAATATATGGATAAGATGAGACATTATATAGAGAAGACTACGAAC
agtgatttcaatttttcaaaacaaaagcaactGAATCAAGTTACACATGC
TCCACTGAACATTTTATTAGCGCCCAACATCAGTGCATCAGATATCAAAT
TAATAACAGAAGCTAGTCACAACGTATCTGGAGCTTTATCACAAGCTAAA
ATCACGTGTAGCGATAGTCTAGTGGAAAACTTCGATGTCGATAATTCACC
AGTACCTGTGGTGACGTAGatgggaTGTGCATTCTGTAAAGATCCAAATC
AGTCTAATAAAAATGACTCTGGAGAACCTGATGAAAGATCAAGGCTATTA
GACAATCAACATCAACCTTCCGCTACTAAACCTATCACGGATGACTCCAA
TTATCACTCTACAAATTCTATAACGAAAACAGACGAACAGTCACAATTGA
GTAGGATATTACACAAAACAGCACAaaatatAATAGACGTGTCAGCAATC
GAACCTCACAGTATGGAACGTTCAGAATATATGGATAAGATGAGACATTA
TATAGAGAAGACTACGAACagtgatttcaatttttcaaaacaaaagcaac
tGAATCAAGTTACACATGCTCCACTGAACATTTTATTAGCGCCCAACATC
AGTGCATCAGATATCAAATTAATAACAGAAGCTAGTCACAACGTATCTGG
AGCTTTATCACAAGCTAAAATCACGTGTAGCGATAGTCTAGTGGAAAACT
TCGATGTCGATAATTCACCAGTACCTGTGGTGACGTAGatgggaTGTGCA
TTCTGTAAAGATCCAAATCAGTCTAATAAAAATGACTCTGGAGAACCTGA
TGAAAGATCAAGGCTATTAGACAATCAACATCAACCTTCCGCTACTAAAC
CTATCACGGATGACTCCAATTATCACTCTACAAATTCTATAACGAAAACA
GACGAACAGTCACAATTGAGTAGGATATTACACAAAACAGCACAaaatat
AATAGACGTGTCAGCAATCGAACCTCACAGTATGGAACGTTCAGAATATA
TGGATAAGATGAGACATTATATAGAGAAGACTACGAACagtgatttcaat
ttttcaaaacaaaagcaactGAATCAAGTTACACATGCTCCACTGAACAT
TTTATTAGCGCCCAACATCAGTGCATCAGATATCAAATTAATAACAGAAG
CTAGTCACAACGTATCTGGAGCTTTATCACAAGCTAAAATCACGTGTAGC
GATAGTCTAGTGGAAAACTTCGATGTCGATAATTCACCAGTACCTGTGGT
GACGTAGatgggaTGTGCATTCTGTAAAGATCCAAATCAGTCTAATAAAA
ATGACTCTGGAGAACCTGATGAAAGATCAAGGCTATTAGACAATCAACAT
CAACCTTCCGCTACTAAACCTATCACGGATGACTCCAATTATCACTCTAC
AAATTCTATAACGAAAACAGACGAACAGTCACAATTGAGTAGGATATTAC
ACAAAACAGCACAaaatatAATAGACGTGTCAGCAATCGAACCTCACAGT
ATGGAACGTTCAGAATATATGGATAAGATGAGACATTATATAGAGAAGAC
TACGAACagtgatttcaatttttcaaaacaaaagcaactGAATCAAGTTA
CACATGCTCCACTGAACATTTTATTAGCGCCCAACATCAGTGCATCAGAT
ATCAAATTAATAACAGAAGCTAGTCACAACGTATCTGGAGCTTTATCACA
AGCTAAAATCACGTGTAGCGATAGTCTAGTGGAAAACTTCGATGTCGATA
ATTCACCAGTACCTGTGGTGACGTAGatgggaTGTGCATTCTGTAAAGAT
CCAAATCAGTCTAATAAAAATGACTCTGGAGAACCTGATGAAAGATCAAG
GCTATTAGACAATCAACATCAACCTTCCGCTACTAAACCTATCACGGATG
ACTCCAATTATCACTCTACAAATTCTATAACGAAAACAGACGAACAGTCA
CAATTGAGTAGGATATTACACAAAACAGCACAaaatatAATAGACGTGTC
AGCAATCGAACCTCACAGTATGGAACGTTCAGAATATATGGATAAGATGA
GACATTATATAGAGAAGACTACGAACagtgatttcaatttttcaaaacaa
aagcaactGAATCAAGTTACACATGCTCCACTGAACATTTTATTAGCGCC
CAACATCAGTGCATCAGATATCAAATTAATAACAGAAGCTAGTCACAACG
TATCTGGAGCTTTATCACAAGCTAAAATCACGTGTAGCGATAGTCTAGTG
GAAAACTTCGATGTCGATAATTCACCAGTACCTGTGGTGACGTAGatggg
aTGTGCATTCTGTAAAGATCCAAATCAGTCTAATAAAAATGACTCTGGAG
AACCTGATGAAAGATCAAGGCTATTAGACAATCAACATCAACCTTCCGCT
ACTAAACCTATCACGGATGACTCCAATTATCACTCTACAAATTCTATAAC
GAAAACAGACGAACAGTCACAATTGAGTAGGATATTACACAAAACAGCAC
AaaatatAATAGACGTGTCAGCAATCGAACCTCACAGTATGGAACGTTCA
GAATATATGGATAAGATGAGACATTATATAGAGAAGACTACGAACagtga
tttcaatttttcaaaacaaaagcaactGAATCAAGTTACACATGCTCCAC
TGAACATTTTATTAGCGCCCAACATCAGTGCATCAGATATCAAATTAATA
ACAGAAGCTAGTCACAACGTATCTGGAGCTTTATCACAAGCTAAAATCAC
GTGTAGCGATAGTCTAGTGGAAAACTTCGATGTCGATAATTCACCAGTAC
CTGTGGTGACGTAG
Gene-mRNA-Prot
This mRNA is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
MSTRG.14302MSTRG.14302Clytia hemisphaerica_ch_hm2_pilongene
The following polypeptide feature(s) derives from this mRNA:
Feature NameUnique NameSpeciesType
MSTRG.14302.1.p1MSTRG.14302.1.p1-proteinClytia hemisphaerica_ch_hm2_pilonpolypeptide
The following exon feature(s) are a part of this mRNA:
Feature NameUnique NameSpeciesType
MSTRG.14302.1.p1.exon1MSTRG.14302.1.p1.exon1Clytia hemisphaerica_ch_hm2_pilonexon
MSTRG.14302.1.p1.exon2MSTRG.14302.1.p1.exon2Clytia hemisphaerica_ch_hm2_pilonexon
MSTRG.14302.1.p1.exon3MSTRG.14302.1.p1.exon3Clytia hemisphaerica_ch_hm2_pilonexon
MSTRG.14302.1.p1.exon4MSTRG.14302.1.p1.exon4Clytia hemisphaerica_ch_hm2_pilonexon
MSTRG.14302.1.p1.exon5MSTRG.14302.1.p1.exon5Clytia hemisphaerica_ch_hm2_pilonexon
MSTRG.14302.1.p1.exon6MSTRG.14302.1.p1.exon6Clytia hemisphaerica_ch_hm2_pilonexon
MSTRG.14302.1.p1.exon7MSTRG.14302.1.p1.exon7Clytia hemisphaerica_ch_hm2_pilonexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0000118_pilongenomesc0000118_pilon:551817..558181 +