MSTRG.1422.1.p1 (mRNA) -

Overview
NameMSTRG.1422.1.p1
Unique NameMSTRG.1422.1.p1
TypemRNA
OrganismClytia hemisphaerica_ch_hm2_pilon (Jellyfish)

Sequence
The following sequences are available for this feature:

mRNA from alignment at sc0000006_pilon:3260969..3265199-

Legend: exonfive_prime_UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>MSTRG.1422.1.p1 ID=MSTRG.1422.1.p1|Name=MSTRG.1422.1.p1|organism=Clytia hemisphaerica_ch_hm2_pilon|type=mRNA|length=4231bp|location=Sequence derived from alignment at sc0000006_pilon:3260969..3265199- (Clytia hemisphaerica_ch_hm2_pilon)
GTTTCAGCAAATAAAAAGTAAAGCAAGAAATTAATATAAAAAAATTATGG
GAATATGTTGCATGCACTGGATATCAGAGCTCGATATGTTCTGGATATAC
TTCACCAAATACTTTTGTTGATATTACAATTTTGTATCCAGAACCATCAA
CATAAAAATCCACTCACCAATGATTTTGGAGTTGCGTTAGCAGAAATTGT
GAGAAAGAATCTTGGGAAGTTTAAAAGGCGAAAGGAGATACACAAACATG
ATTATTACACTGTGTATTTTTACGATGATCCTGGAACGAATCAACAATTA
AAAGCAAGGATTCCAATTGAAACTTTGGATATAACAATTCTGGCGAAACT
AATCAATTTGGATTTTATGATATCAGAGATTCGTCAAAGATCACGATGTT
GTAATCTATGCTCTCAACAGCATAAGAAATGTACATGTGGAAACATCCAA
TGTAACAACAGGGCTTGTAAACTGGAACCATGCCAAGATGTAAATTGTAA
TAATGCACAGAATTGTAAATTTATCGCTTTCAAACGATTCATTGGTTTAG
TCCAAGGATTCAGGAACTGTTTCGCTCATCTGAATGATCATACATTTTTA
GATGATCTGCAAAATGGAGTACAACATCTCCAAGATTTCCCTAACTTGGC
ATGGGATGCTTTAATGGGTGAAGTTGTAACTGCATCATTGGAACCTCTTG
ATTTTCTGAGGAAATACAGAGCTCCAAACAGTATGAATACTTTTATAACA
GATCACCAATTTAAATGTTTTGAAATGGAATTGTACATTGGTGTTTTTAA
AGATACTGATTTTCTTCTACCTGCTGTGGCAAATAAAGCGAAGCATTTCC
AAAACGTTGTTCTTGGAGCTGAAGGTATTGATGAAAATATTGAGAAGAAG
TTCAAATCAAGTTTGAACGATTTCAAGAACAGCCTGGATACGCTAACTGT
CAACTGGGACGAGCTAAGAACTCATCTGAACAAAGGTTAGTAAAGCACGA
CAATTAATACTCTTTGTTTTAATAAAGCAATTCCAGCTAATCCATTAAAG
TGTGAAGTCTCCTTTTTGGACCTACCTGATGGAGGTCCTATAAATTAATA
ACCCGTGTTCGTTAGTTTGTTAGTTTGTTAGTTACCTTATCTTATTGATA
ATTAGAAATGATAATTAGTTTGTGATTTGACATAGAAAAGCGTGTAATAG
CTATTTTGTATTGTTTTTCTAAAGTCTTTTTAATAGTGTTGATAATTGTG
CTTTTATTATATATTCCAAACTATTTTCTCAACAATATGTAATTTTATTA
TCAGGTAGGTCCATAAGAGTATCGCTTGTTAAATCATAACTTGAAGTCCT
TAAAAGCTAAACTTTTGAACATTGATGTTTGCCTTCAGCCCCCTTTGTAC
AGTATGGTGTCCATAAAAAAGGGAGAAAAAAATGTTAAAATGTTATGATG
AATAATCTTCAAAATCTTCCGAACATTCTGTTTCAAAAGCACGTCGACAC
TTTTCCCTTTTAACTCTTTCTTTCTTTTTTATCATCTTCGTTTGTCTTCT
TTATTTGAAGAAAAAAAACCATTTGTTATTACTGTCCTCGATGATACCTT
TACAACGACGCATAACTTTTTGATATAAATAAATGGGTCCTTCGGTTGGG
ACAACTTTACCCCAAAACTTATCTTATAAGAGGCCAGCCGATATGGAGGC
CAAAACTTACACAATACGTCTCTGATCCATCTTGTCTAAACCCTTCTCCA
TATATTATGCAAAGTAGAAGTTAAACTGAGAGATTTAACAAAAAGGTAAA
GTGTCCGCATATGTTTGAGACAAACCTTGGGTGATTAACATTGGGTGATT
AACATTGGATCTATGATTAGTCTCGTTATTAGTGTAATTTTTGAAGATTG
TCAAATTCCTAAATGGTGGGGGGGGGGTTGTAGGGGTTCAAAATACCGTT
TTCCCGTCAAAATTATTGCTGAATCCCGGAATCCCGAAAATTGGAAAAAT
AATAACACCGTCACACCGGCTTGTACAGGGCAAAAATGTACCTAAATACC
GTCGCCGTCTGATTTTAAAATACCGTTTTCCCGTCTCTTTTTTCGTCAAA
TCCCGTAATACCGTACTAAAAAAGGGCCAATCCCGTCACACTGTAAAAGT
ACAACCCCCCCCCTTAGAATAATGCAGAAGATTCAAATAATTAACCCTTT
CGAGTTCAGACTTTTAGTCATATTTTTAAATATAGAAAACTCTGAACGAG
AAAAATAATTTAGAATAATGCAGAGATAAGATTCAAATAATCAAACCTTT
TTACGTTTAGATTGTGTTCAACATAATGGAACAGTGATCAATTACAACGA
TGCAAATTTGAAGAAAGGAAGGTAATATTTGATTTGGATTCTAATTCTGT
TGTGTTTCCGCTTTTGATACAAGTGGTATAGTTATAGCACATTGTCTATG
GCGCGCCAAAAGACTTTTTAATACCAACTTTTTTTTTTGATACCAACTTT
TTTTTTTTGGTACTAACTTTTTTTTTTGATACCAACTTTTTTTTTTTTTG
ATACCAACTTTTTTTTTAAACCAACTTTTTTTTTTTGATACCAACTTTTT
TTTTTTTGATACCAACTTTTTTTTTTATACCAACTTTTTTTTTTTTTACC
AACTTTTTTTTTGGTATCAATGTTTTGTACAATACCAAATTTTGCCTCGA
TGTTTAATTGTTCAAGTGTAGAAGGGCCCTTAAATTTTTTTCCGGGGAAA
TAAAGTCGGGCGAAAGCTGATAACTGGAATAAGTTAAGGCAAGACACGGG
AGAAGATAGACTAGGTATTAGTCGGTTTTTATAAAATATAGCTAGGAAGA
TAACCACGGATCGAAAATCGTTAAATTTTCTTCCTTCGCCCGTACTCTCC
TTCCATGCCACCCCTTTAAATAAATCTCGGGAATTTCTCAATCTTCTTTT
AAAAATTTACAGGCTAGTTTACTTATATTAGTCTAGGGAGAAGAGAGTAG
CGTGACAGGAAGAAATAAGTTCAATAATGAATGGAACTAAAACGAATTTC
TTTGGTAATCGGGATGGGCGACTACTCGAATATGACGGAAGGGAATACCT
TATAGGAAAGATATTATCGCAGAATTAAGAACAATATTTGCACTTAAATA
GTATACTTTAGGTGTTGTTATTTATTTTGATGTAGCAACACTAGAAAAAA
TTCGAAAATAGGTCCAGAACCCGTGATTAGGGATTTTCTTAATGATATTG
TTAATCTTAATTAGAATTAGCTAAAAAAAAGCCCGGATTCTGAAGTGAAT
ATAATAGGGAGGTTTGAGTATTCGAGTATCACGATGACGAACAGGCTTTT
CTTATTAAAGCCCCATCTACATCACACAAAAGAAAATAGGAGTAAACGAG
ACAAATAATGTTGATGTTATAAAACAAGGTTAGTATTACGTCGGTATTAC
GCCATCACTACGTCAGTATTACGTCGATATAATGTCGGTATTATAAAAAT
AAATTGGCATTGTAAAAAAAGTTGCTATCAAGGAAAAATAAAAAAAGTCG
GTATCAAAAATAAAAGTTGGTATTAAAAAAAAAAGTTGGTATCAAAAAAA
AAAAGTTGGTATCAAAAAAAAAAAGTTGGTATTAAAAAAAAAAAGTTGGT
ATCAAAAAAAATAGTTGGTATCAAAAAGTTGGTATCAAAAAAAAGAAGTT
GGTATCAAAAAAAAAAAGTTGGTATTAAAAAGCCTTTTGGCGCGCCATAA
TTGTCTTTTACTTTCCCAGCTGGCACACAACGTTGTTTCAACGTTCATCT
AACGTTATATGGACGTTGTGAACGTCAGATAAACGTCGAAAAATGTTGTG
TGCCAGCTGGGTTACTAGAGGTGGGGGATAGTTGGGATTATTGTCTTTCT
ACCAAATTATATGGGAAAAAGTAGAAATACGCAATTTGATTTATTCTGCA
TAATGTCTTCTCTCTATTTCTTTTTAGTTTTGATGTCTCAATCAACGTAT
CTGGTGGATGCACTTTGATTTTTAATAACAGTTACAAGTTGATTAATATT
CAATTACGCAAATCTAACAGACAATGGAATGATTTTTCGCCAATTGTTGG
ACCGCATCATCACAATTTTATTACAGTTGATAAATTAGAGCTTGGAAGTT
TTTATGAGTTTCGTGGCATCTGTTTGAACCATGCTAGAGAAGTGGTCATC
TTCAAAACAAAAGAAGACTTGCAAATCAAAG

Coding sequence (CDS) from alignment at sc0000006_pilon:3260969..3265199-

>MSTRG.1422.1.p1 ID=MSTRG.1422.1.p1|Name=MSTRG.1422.1.p1|organism=Clytia hemisphaerica_ch_hm2_pilon|type=CDS|length=3735bp|location=Sequence derived from alignment at sc0000006_pilon:3260969..3265199- (Clytia hemisphaerica_ch_hm2_pilon)
TTTTGATGTCTCAATCAACGTATCTGGTGGATGCACTTTGATTTTTAATA
ACAGTTACAAGTTGATTAATATTCAATTACGCAAATCTAACAGACAATGG
AATGATTTTTCGCCAATTGTTGGACCGCATCATCACAATTTTATTACAGT
TGATAAATTAGAGCTTGGAAGTTTTTATGAGTTTCGTGGCATCTGTTTGA
ACCATGCTAGAGAAGTGGTCATCTTCAAAACAAAAGAAGACTTGCAAATC
AAAATTGTGTTCAACATAATGGAACAGTGATCAATTACAACGATGCAAAT
TTGAAGAAAGGAAGATGTTGCATGCACTGGATATCAGAGCTCGATATGTT
CTGGATATACTTCACCAAATACTTTTGTTGATATTACAATTTTGTATCCA
GAACCATCAACATAAAAATCCACTCACCAATGATTTTGGAGTTGCGTTAG
CAGAAATTGTGAGAAAGAATCTTGGGAAGTTTAAAAGGCGAAAGGAGATA
CACAAACATGATTATTACACTGTGTATTTTTACGATGATCCTGGAACGAA
TCAACAATTAAAAGCAAGGATTCCAATTGAAACTTTGGATATAACAATTC
TGGCGAAACTAATCAATTTGGATTTTATGATATCAGAGATTCGTCAAAGA
TCACGATGTTGTAATCTATGCTCTCAACAGCATAAGAAATGTACATGTGG
AAACATCCAATGTAACAACAGGGCTTGTAAACTGGAACCATGCCAAGATG
TAAATTGTAATAATGCACAGAATTGTAAATTTATCGCTTTCAAACGATTC
ATTGGTTTAGTCCAAGGATTCAGGAACTGTTTCGCTCATCTGAATGATCA
TACATTTTTAGATGATCTGCAAAATGGAGTACAACATCTCCAAGATTTCC
CTAACTTGGCATGGGATGCTTTAATGGGTGAAGTTGTAACTGCATCATTG
GAACCTCTTGATTTTCTGAGGAAATACAGAGCTCCAAACAGTATGAATAC
TTTTATAACAGATCACCAATTTAAATGTTTTGAAATGGAATTGTACATTG
GTGTTTTTAAAGATACTGATTTTCTTCTACCTGCTGTGGCAAATAAAGCG
AAGCATTTCCAAAACGTTGTTCTTGGAGCTGAAGGTATTGATGAAAATAT
TGAGAAGAAGTTCAAATCAAGTTTGAACGATTTCAAGAACAGCCTGGATA
CGCTAACTGTCAACTGGGACGAGCTAAGAACTCATCTGAACAAAGTTTTG
ATGTCTCAATCAACGTATCTGGTGGATGCACTTTGATTTTTAATAACAGT
TACAAGTTGATTAATATTCAATTACGCAAATCTAACAGACAATGGAATGA
TTTTTCGCCAATTGTTGGACCGCATCATCACAATTTTATTACAGTTGATA
AATTAGAGCTTGGAAGTTTTTATGAGTTTCGTGGCATCTGTTTGAACCAT
GCTAGAGAAGTGGTCATCTTCAAAACAAAAGAAGACTTGCAAATCAAAAT
TGTGTTCAACATAATGGAACAGTGATCAATTACAACGATGCAAATTTGAA
GAAAGGAAGATGTTGCATGCACTGGATATCAGAGCTCGATATGTTCTGGA
TATACTTCACCAAATACTTTTGTTGATATTACAATTTTGTATCCAGAACC
ATCAACATAAAAATCCACTCACCAATGATTTTGGAGTTGCGTTAGCAGAA
ATTGTGAGAAAGAATCTTGGGAAGTTTAAAAGGCGAAAGGAGATACACAA
ACATGATTATTACACTGTGTATTTTTACGATGATCCTGGAACGAATCAAC
AATTAAAAGCAAGGATTCCAATTGAAACTTTGGATATAACAATTCTGGCG
AAACTAATCAATTTGGATTTTATGATATCAGAGATTCGTCAAAGATCACG
ATGTTGTAATCTATGCTCTCAACAGCATAAGAAATGTACATGTGGAAACA
TCCAATGTAACAACAGGGCTTGTAAACTGGAACCATGCCAAGATGTAAAT
TGTAATAATGCACAGAATTGTAAATTTATCGCTTTCAAACGATTCATTGG
TTTAGTCCAAGGATTCAGGAACTGTTTCGCTCATCTGAATGATCATACAT
TTTTAGATGATCTGCAAAATGGAGTACAACATCTCCAAGATTTCCCTAAC
TTGGCATGGGATGCTTTAATGGGTGAAGTTGTAACTGCATCATTGGAACC
TCTTGATTTTCTGAGGAAATACAGAGCTCCAAACAGTATGAATACTTTTA
TAACAGATCACCAATTTAAATGTTTTGAAATGGAATTGTACATTGGTGTT
TTTAAAGATACTGATTTTCTTCTACCTGCTGTGGCAAATAAAGCGAAGCA
TTTCCAAAACGTTGTTCTTGGAGCTGAAGGTATTGATGAAAATATTGAGA
AGAAGTTCAAATCAAGTTTGAACGATTTCAAGAACAGCCTGGATACGCTA
ACTGTCAACTGGGACGAGCTAAGAACTCATCTGAACAAAGTTTTGATGTC
TCAATCAACGTATCTGGTGGATGCACTTTGATTTTTAATAACAGTTACAA
GTTGATTAATATTCAATTACGCAAATCTAACAGACAATGGAATGATTTTT
CGCCAATTGTTGGACCGCATCATCACAATTTTATTACAGTTGATAAATTA
GAGCTTGGAAGTTTTTATGAGTTTCGTGGCATCTGTTTGAACCATGCTAG
AGAAGTGGTCATCTTCAAAACAAAAGAAGACTTGCAAATCAAAATTGTGT
TCAACATAATGGAACAGTGATCAATTACAACGATGCAAATTTGAAGAAAG
GAAGATGTTGCATGCACTGGATATCAGAGCTCGATATGTTCTGGATATAC
TTCACCAAATACTTTTGTTGATATTACAATTTTGTATCCAGAACCATCAA
CATAAAAATCCACTCACCAATGATTTTGGAGTTGCGTTAGCAGAAATTGT
GAGAAAGAATCTTGGGAAGTTTAAAAGGCGAAAGGAGATACACAAACATG
ATTATTACACTGTGTATTTTTACGATGATCCTGGAACGAATCAACAATTA
AAAGCAAGGATTCCAATTGAAACTTTGGATATAACAATTCTGGCGAAACT
AATCAATTTGGATTTTATGATATCAGAGATTCGTCAAAGATCACGATGTT
GTAATCTATGCTCTCAACAGCATAAGAAATGTACATGTGGAAACATCCAA
TGTAACAACAGGGCTTGTAAACTGGAACCATGCCAAGATGTAAATTGTAA
TAATGCACAGAATTGTAAATTTATCGCTTTCAAACGATTCATTGGTTTAG
TCCAAGGATTCAGGAACTGTTTCGCTCATCTGAATGATCATACATTTTTA
GATGATCTGCAAAATGGAGTACAACATCTCCAAGATTTCCCTAACTTGGC
ATGGGATGCTTTAATGGGTGAAGTTGTAACTGCATCATTGGAACCTCTTG
ATTTTCTGAGGAAATACAGAGCTCCAAACAGTATGAATACTTTTATAACA
GATCACCAATTTAAATGTTTTGAAATGGAATTGTACATTGGTGTTTTTAA
AGATACTGATTTTCTTCTACCTGCTGTGGCAAATAAAGCGAAGCATTTCC
AAAACGTTGTTCTTGGAGCTGAAGGTATTGATGAAAATATTGAGAAGAAG
TTCAAATCAAGTTTGAACGATTTCAAGAACAGCCTGGATACGCTAACTGT
CAACTGGGACGAGCTAAGAACTCATCTGAACAAAG
Gene-mRNA-Prot
This mRNA is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
MSTRG.1422MSTRG.1422Clytia hemisphaerica_ch_hm2_pilongene
The following exon feature(s) are a part of this mRNA:
Feature NameUnique NameSpeciesType
MSTRG.1422.1.p1.exon3MSTRG.1422.1.p1.exon3Clytia hemisphaerica_ch_hm2_pilonexon
MSTRG.1422.1.p1.exon2MSTRG.1422.1.p1.exon2Clytia hemisphaerica_ch_hm2_pilonexon
MSTRG.1422.1.p1.exon1MSTRG.1422.1.p1.exon1Clytia hemisphaerica_ch_hm2_pilonexon
The following polypeptide feature(s) derives from this mRNA:
Feature NameUnique NameSpeciesType
MSTRG.1422.1.p1MSTRG.1422.1.p1-proteinClytia hemisphaerica_ch_hm2_pilonpolypeptide
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0000006_pilongenomesc0000006_pilon:3260969..3265199 -