MSTRG.14163.5.p1 (mRNA) -

Overview
NameMSTRG.14163.5.p1
Unique NameMSTRG.14163.5.p1
TypemRNA
OrganismClytia hemisphaerica_ch_hm2_pilon (Jellyfish)

Sequence
The following sequences are available for this feature:

mRNA from alignment at sc0000117_pilon:141604..146405+

Legend: five_prime_UTRexonpolypeptideCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>MSTRG.14163.5.p1 ID=MSTRG.14163.5.p1|Name=MSTRG.14163.5.p1|organism=Clytia hemisphaerica_ch_hm2_pilon|type=mRNA|length=4802bp|location=Sequence derived from alignment at sc0000117_pilon:141604..146405+ (Clytia hemisphaerica_ch_hm2_pilon)
ATTTAATACTGTTATAGCAAGAAAAGGTAAACCTAGTTTCGTACATGATT
TAAATAACACGTTGGGGTAAAATCAGTGAATTGAGGTAGGTTATCATTGA
GTTCGATCAGTCAGTTATGCTAGCTATGAATGACTTTAGAATCAATCTTT
TGAATTCTAATAGAAAATATCGAACCAAAATGATAGGCTGATAAGTCGta
cagaaaaaatataaaactttgtAACTTTTTCTCTCAGAAAGGGGAGTGCC
TTGTTCAAACTTTCAGCAtgatcataattttttttgaattcacgGATAAA
ATTATCGAAAAAGTCTTTAAAGTTTTGCAACAGAAAGGTTTTAGTCAAAT
TCTCTTTGGAGAATATTTCATGGTttaagaaatctcaaaatctgCTTGCT
TATAGTACACTGATCTGACCACGTGCCAAATTCTGCATAGTTTTAAGACT
TTTATGAataatgataatatttttcaatttcaggctcaaatttttgaaga
gaaatgGGTGGCTGGCTTAGTTTCCAAAAAGACCATGAATCTACCGAAGA
TGTCAAAAAATATTGCCAATCTATCATTTTTGTACGATTTTATGGACAGA
CGAACAGTATGGTAaggctacacgctttttttataagaaccatgcttttc
catttcatcatggatactCTTAATTTTTGAGGGGAAAATTATCCTAAATT
ACGGTATTCTTGGATTAGGATTCAAATTTAACTTCAATTTAACATGAAAT
ACATAGCTGAAGCATAAACTGGCACTTTTGTGAAAGCCTTGAGCTTTATA
GATGGGTAATTGGCGATTAAcagttaaaaatgctctaaaaactaaaaatg
gcattcttaggttccatgatggtgatattcttacatactatattcttaaa
tttttcgcCAATTTCACTATAAATATTctgagtatattcttataaaaaga
gtgcGTGTATTTAATGAAATAAccattaaagtctattcacgataagtgtg
cactcttttttcttttacctataacttttgaaggaattctttaatattta
taaatttggtatcattggaaagatattagtgagtggaacaatttgaaata
aaaaaatctttagaaaagttctaaaaatgaagatgaaaatgaagaagaaa
aatataaaaatcttgtagaaaagtgctatgactataattttcactgaagt
gaattcttaattgtcgaacgtcatcactgtgaaaaaatttctcaaaaata
atcattcaatcaaaagatatcaaacaaagttataagctgattgacgtcaa
aaaacgatgttttctgctgttttttagggtcaatcacttattaactttgt
atcataactttatcttgaataaatattttagtgaaatttcttcccagtga
tgacctcctaagatcaaagaatctctccagcgaaaatgaaagttatactg
tagcacttttctacaagatcttcatttttttcttctttattttcatcttc
gtttttagaatttttttcaaaacttttttatttcaaattgttccactcac
aaatatctctccaacgataccaaatttataaaaattgaagatttccTTCA
Aaggttataggtaaaagaaaaaagagtgcacacttatcatgaacagactt
tagataggaaaagaaacttttggtcaattcaaaattttaagccaCTCTTT
CTCGatcaataatttttgaattagctattttttccaactaattttgttaa
gaaaaaaatttccttcgcAAAGCAAAATCCTTTAATTGTGTAGCCTAAAT
tcttaaatattcttaaataGCTTTTGATAAAGTAGCCGCTCGTTAAAATT
TGTATTCACTTCCTCTAAAAACTAGTTGACACGACATGAGGTAATATACC
TTAAGAACTTTTCTCGAGGTGGAGAAAACTTTTACTTATTGGTAATTTGG
AATTTTAGATGCTACCAAGGACCATGTTTATTAGCGAGTgcctcactaaa
aaccgagaTTTTTTATCCCGTtgattgcgtagaaaaaacgcgggtgacgt
ctagtataggctacatGTTTATCAGAATATTTTCGTTTATAGAAATCACA
CGAAATGGACCGCGATGATGTCGATGCTGGAGGAAGGGAGAAATCTAGCC
TTGGTATTATTCTGAATGAGCTAGACCGTGAGATCAAAATGGCTCCAACA
GTTGCCGAATTCGAAATGACGGAACCAATGAAAGCATTGTTGAAGAAGTT
GGCAGTCATTAGAGTTTGCACAAAAGAATGTGAGAATGAAGAAGATTGCC
TTAAAAGGCTTTTGGaagattcaaaacattttgagaaGATTTATCGCGAA
AGGGGTCGTAAGTATTCTTCTTTTCAAACAAGATTATACAAATTGtgtct
ccataacttgaacatgCGCAGAGGGAACAAGAATTTATGCgttcgaaatt
ttgaattatcgAGTAAGGTTAataaagcattgttaactgaagggacaaga
aaacttgtttgagttaagggaTAGTACTTAAAAAACGACAGTTTTCTTcc
tgttttattcaaaatactttaataaaATACCATAACTTTGTATCGGGGGA
TAAAGTCGTCTTTGACGACGGTTGAGATGGCTATCGAAGTATATTATGTT
GTCTTAAATGAAGCTGAtgaatgaaaaagtgaaaagtccTCTTTGACGAC
GTCTTGGACAATGAGAGAATAATAGACCTTCATAGCAGTTTTGGAGTACT
TTCTGTAAATTCTAGCGGTTAGAGGAAAAGGAGACAATGGAATTGGAAAA
GaagttttttatctttataGACAAATCAGAGAATCTGCATGATGACCATG
ACTTCTATTGGGGAACGCGACAGCAAATGTTGTTTGGCAAAGTGATCGTT
GATTGGTTACCTGAACACATCGAGACAAAAACTCCACCTATGGATCCTAT
TTTTGGAGTTCTGTTGAACCCTACTGGAGGTTTgtatattgggctcttcc
aaaaaGTTTTCGTACATGAGGAGTGGATGATAGAGTTTcctaaaatctac
aaaatttgccttgtccgaggggggggggtaacttTAATCattttgagggt
aattttgactGTCAAGGGGGTCAAgaaatgcttgtccggggggtaaattt
ccaaaataattttatatcctccaccccccccatatatttaaatattttct
ggaaaagcccattctcatttttgtcatattttttttgattccaTCTTCCC
AAACTCGAACTAAAAAAGTCTCTTAGCTATGGtatttttcatgattctga
tagcgctcacgattGTTCATGTTCATCAGgtatataagaatatttataag
aacaattttagaaaaacaacgaGGCTCGaaaaaaaaccccaaaaatagaa
aattttaagaacattgttgAGCCAAGAataactacaatcatggtcgtaat
atttgagaaaaaagggaaatccaccagGAAGTTTTGAATAATAACcgcaa
tcgatttgtaagtgctctaaagtaggttggaagggtagagttttaactct
gagttttaacatgagacttaagactgaggatcgaaatgttcaaaaatggt
ccattaaggctcataatatagcctggaggtctataaacccgagccaaatt
gatagatggcccaaaatcggcTTTCTcacccgaactccaaatttcgaaaa
acgagaaaataagcttaattctcaatagatttcgaccatgattgtaaatG
CTTAGTAAATTATCACATTAGAATAGACCTCAATCCTATCTATTAAAAAC
CAGAACAGGCCAATTGATGCTCATACCacgaaaacaataaaaaataaccg
agcctgaaaaaaattaccttatcggccctttttacaccggtcCTTATTAC
gtcacgagcccaaaaataccGCCAATaaaggccggtgtaaaaagTGCCGA
TAAGATatactgattcttataaagaagttTAAAATTTAGTTCTCATTCTT
GGTATTTATTAAGGGCTTGTTGGGCCAGGTGATTTAAAATGGATGCACGA
TTCTTTATTCGACGATTTGGGACCTTTTGCATATCATTCAGCTGTTCATG
ATGCTTTCGgatatttgaaaacaaaccataATTCTGGTCCTGGATATTGT
TATTTGAACAAAGGAATTTTTGGTGATTGGAGTCCATTTGGTGGACAATT
ATTTGGCTTGAGGTATTGGAATGGGCTTTTGGGTGAAGCCCAACCAGAAG
AAGCAAAGGCAGATCAGTTTGTGTTCAAATAAAAAGCGATAACACAATTG
AAACTCTTATAGGTAAACAAAGTTTCTAAAGCTATACCCTATTTCTGTGC
AGAATGGTGCATCCGTGAATATTATTTCTTGTTCATCCTGTAACATTTAA
GTTACTAAGTTATGAGTATTTCAGCttttatttctttctaagaattttag
aatttgtagtatagtatatttttataaattttatctttCAAAGATCTTAA
GGAtttttttCATCATCGGTTGAGAAATTTAGGTATTTAGAGTACCGTAC
CAAAGcgatttttccatttcatcatggatattcttaatttttacaaaaac
tttctaTACAGGGGAAATGCTTTTTCACTCTTTCAGGTTCAGGTTCAGGT
TTTAGTTCAGCCCCCCgggggggtggcaggggtggggggtactagggcaa
tgggttacggggtTGctcgctggtcagggtacctttttaacctccacgag
tcccaggtaggggtcacaaaaacactaaaatagaaaaattccctcgtagg
gt

Coding sequence (CDS) from alignment at sc0000117_pilon:141604..146405+

>MSTRG.14163.5.p1 ID=MSTRG.14163.5.p1|Name=MSTRG.14163.5.p1|organism=Clytia hemisphaerica_ch_hm2_pilon|type=CDS|length=3204bp|location=Sequence derived from alignment at sc0000117_pilon:141604..146405+ (Clytia hemisphaerica_ch_hm2_pilon)
atgGGTGGCTGGCTTAGTTTCCAAAAAGACCATGAATCTACCGAAGATGT
CAAAAAATATTGCCAATCTATCATTTTTGTACGATTTTATGGACAGACGA
ACAGTATGAAATCACACGAAATGGACCGCGATGATGTCGATGCTGGAGGA
AGGGAGAAATCTAGCCTTGGTATTATTCTGAATGAGCTAGACCGTGAGAT
CAAAATGGCTCCAACAGTTGCCGAATTCGAAATGACGGAACCAATGAAAG
CATTGTTGAAGAAGTTGGCAGTCATTAGAGTTTGCACAAAAGAATGTGAG
AATGAAGAAGATTGCCTTAAAAGGCTTTTGGaagattcaaaacattttga
gaaGATTTATCGCGAAAGGGGTCACAAATCAGAGAATCTGCATGATGACC
ATGACTTCTATTGGGGAACGCGACAGCAAATGTTGTTTGGCAAAGTGATC
GTTGATTGGTTACCTGAACACATCGAGACAAAAACTCCACCTATGGATCC
TATTTTTGGAGTTCTGTTGAACCCTACTGGAGGGCTTGTTGGGCCAGGTG
ATTTAAAATGGATGCACGATTCTTTATTCGACGATTTGGGACCTTTTGCA
TATCATTCAGCTGTTCATGATGCTTTCGgatatttgaaaacaaaccataA
TTCTGGTCCTGGATATTGTTATTTGAACAAAGGAATTTTTGGTGATTGGA
GTCCATTTGGTGGACAATTATTTGGCTTGAGGTATTGGAATGGGCTTTTG
GGTGAAGCCCAACCAGAAGAAGCAAAGGCAGATCAGTTTGTGTTCAAATA
AatgGGTGGCTGGCTTAGTTTCCAAAAAGACCATGAATCTACCGAAGATG
TCAAAAAATATTGCCAATCTATCATTTTTGTACGATTTTATGGACAGACG
AACAGTATGAAATCACACGAAATGGACCGCGATGATGTCGATGCTGGAGG
AAGGGAGAAATCTAGCCTTGGTATTATTCTGAATGAGCTAGACCGTGAGA
TCAAAATGGCTCCAACAGTTGCCGAATTCGAAATGACGGAACCAATGAAA
GCATTGTTGAAGAAGTTGGCAGTCATTAGAGTTTGCACAAAAGAATGTGA
GAATGAAGAAGATTGCCTTAAAAGGCTTTTGGaagattcaaaacattttg
agaaGATTTATCGCGAAAGGGGTCACAAATCAGAGAATCTGCATGATGAC
CATGACTTCTATTGGGGAACGCGACAGCAAATGTTGTTTGGCAAAGTGAT
CGTTGATTGGTTACCTGAACACATCGAGACAAAAACTCCACCTATGGATC
CTATTTTTGGAGTTCTGTTGAACCCTACTGGAGGGCTTGTTGGGCCAGGT
GATTTAAAATGGATGCACGATTCTTTATTCGACGATTTGGGACCTTTTGC
ATATCATTCAGCTGTTCATGATGCTTTCGgatatttgaaaacaaaccata
ATTCTGGTCCTGGATATTGTTATTTGAACAAAGGAATTTTTGGTGATTGG
AGTCCATTTGGTGGACAATTATTTGGCTTGAGGTATTGGAATGGGCTTTT
GGGTGAAGCCCAACCAGAAGAAGCAAAGGCAGATCAGTTTGTGTTCAAAT
AAatgGGTGGCTGGCTTAGTTTCCAAAAAGACCATGAATCTACCGAAGAT
GTCAAAAAATATTGCCAATCTATCATTTTTGTACGATTTTATGGACAGAC
GAACAGTATGAAATCACACGAAATGGACCGCGATGATGTCGATGCTGGAG
GAAGGGAGAAATCTAGCCTTGGTATTATTCTGAATGAGCTAGACCGTGAG
ATCAAAATGGCTCCAACAGTTGCCGAATTCGAAATGACGGAACCAATGAA
AGCATTGTTGAAGAAGTTGGCAGTCATTAGAGTTTGCACAAAAGAATGTG
AGAATGAAGAAGATTGCCTTAAAAGGCTTTTGGaagattcaaaacatttt
gagaaGATTTATCGCGAAAGGGGTCACAAATCAGAGAATCTGCATGATGA
CCATGACTTCTATTGGGGAACGCGACAGCAAATGTTGTTTGGCAAAGTGA
TCGTTGATTGGTTACCTGAACACATCGAGACAAAAACTCCACCTATGGAT
CCTATTTTTGGAGTTCTGTTGAACCCTACTGGAGGGCTTGTTGGGCCAGG
TGATTTAAAATGGATGCACGATTCTTTATTCGACGATTTGGGACCTTTTG
CATATCATTCAGCTGTTCATGATGCTTTCGgatatttgaaaacaaaccat
aATTCTGGTCCTGGATATTGTTATTTGAACAAAGGAATTTTTGGTGATTG
GAGTCCATTTGGTGGACAATTATTTGGCTTGAGGTATTGGAATGGGCTTT
TGGGTGAAGCCCAACCAGAAGAAGCAAAGGCAGATCAGTTTGTGTTCAAA
TAAatgGGTGGCTGGCTTAGTTTCCAAAAAGACCATGAATCTACCGAAGA
TGTCAAAAAATATTGCCAATCTATCATTTTTGTACGATTTTATGGACAGA
CGAACAGTATGAAATCACACGAAATGGACCGCGATGATGTCGATGCTGGA
GGAAGGGAGAAATCTAGCCTTGGTATTATTCTGAATGAGCTAGACCGTGA
GATCAAAATGGCTCCAACAGTTGCCGAATTCGAAATGACGGAACCAATGA
AAGCATTGTTGAAGAAGTTGGCAGTCATTAGAGTTTGCACAAAAGAATGT
GAGAATGAAGAAGATTGCCTTAAAAGGCTTTTGGaagattcaaaacattt
tgagaaGATTTATCGCGAAAGGGGTCACAAATCAGAGAATCTGCATGATG
ACCATGACTTCTATTGGGGAACGCGACAGCAAATGTTGTTTGGCAAAGTG
ATCGTTGATTGGTTACCTGAACACATCGAGACAAAAACTCCACCTATGGA
TCCTATTTTTGGAGTTCTGTTGAACCCTACTGGAGGGCTTGTTGGGCCAG
GTGATTTAAAATGGATGCACGATTCTTTATTCGACGATTTGGGACCTTTT
GCATATCATTCAGCTGTTCATGATGCTTTCGgatatttgaaaacaaacca
taATTCTGGTCCTGGATATTGTTATTTGAACAAAGGAATTTTTGGTGATT
GGAGTCCATTTGGTGGACAATTATTTGGCTTGAGGTATTGGAATGGGCTT
TTGGGTGAAGCCCAACCAGAAGAAGCAAAGGCAGATCAGTTTGTGTTCAA
ATAA
Gene-mRNA-Prot
This mRNA is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
MSTRG.14163MSTRG.14163Clytia hemisphaerica_ch_hm2_pilongene
The following polypeptide feature(s) derives from this mRNA:
Feature NameUnique NameSpeciesType
MSTRG.14163.5.p1MSTRG.14163.5.p1-proteinClytia hemisphaerica_ch_hm2_pilonpolypeptide
The following exon feature(s) are a part of this mRNA:
Feature NameUnique NameSpeciesType
MSTRG.14163.5.p1.exon1MSTRG.14163.5.p1.exon1Clytia hemisphaerica_ch_hm2_pilonexon
MSTRG.14163.5.p1.exon2MSTRG.14163.5.p1.exon2Clytia hemisphaerica_ch_hm2_pilonexon
MSTRG.14163.5.p1.exon3MSTRG.14163.5.p1.exon3Clytia hemisphaerica_ch_hm2_pilonexon
MSTRG.14163.5.p1.exon4MSTRG.14163.5.p1.exon4Clytia hemisphaerica_ch_hm2_pilonexon
MSTRG.14163.5.p1.exon5MSTRG.14163.5.p1.exon5Clytia hemisphaerica_ch_hm2_pilonexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0000117_pilongenomesc0000117_pilon:141604..146405 +