MSTRG.14121.1.p1 (mRNA) -

Overview
NameMSTRG.14121.1.p1
Unique NameMSTRG.14121.1.p1
TypemRNA
OrganismClytia hemisphaerica_ch_hm2_pilon (Jellyfish)

Sequence
The following sequences are available for this feature:

mRNA from alignment at sc0000116_pilon:611363..617466-

Legend: exonfive_prime_UTRpolypeptideCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>MSTRG.14121.1.p1 ID=MSTRG.14121.1.p1|Name=MSTRG.14121.1.p1|organism=Clytia hemisphaerica_ch_hm2_pilon|type=mRNA|length=6104bp|location=Sequence derived from alignment at sc0000116_pilon:611363..617466- (Clytia hemisphaerica_ch_hm2_pilon)
TTTAAGATTGAAGACAAAAATTTGCGAAGAAAAATAAACCTTGAGCACAA
AAAATGCTTTTTTAAACACTTTTTTCCACCGAAAAACAAATAACTTTTAC
AGACTTACCTTCCCCAAACATTGAAGAAGCCCCTCACTAATAAAAGTAAA
TGAGATAAGATAAGATAAAACCTTAAAATCAACCAGAATTTACAACCTTT
CGTCCAAAGCAAAATACGTGCTTTTCTCGCCGCCATCTTGTTTTCAAATT
GTCCCTCACATGACTTAAGGTTCAATCTCAAAATAAGTGTCTTGGAAAAT
CGGAAATCTTGCAATCCTGTTCTACCTTTGAGATTGGCCTTTTTGTCATA
TGAAAACATCAACTATTCCTCTACATGAAAAAAGGGCAATCTCAATCTCA
AAGATGACCACCACAGTAAAACTCTAAATTTCATAAGGTATTAATTTTGA
GATTAAACCTTAAGTCATGTGAGGGACGAAATCAGAATTCTAGAGAATTC
CATTTGTTTCCAGCTCCCGCGGTCTTTTTTCATCCAATCAGATCGCGCGA
TTTCACTTTCGCTTTCTCTAGTCCAATAAGACTGCGAGATTTGAGTCATG
TGACATCTCTATTATATACTATCTCAATTCGCGTTTCTATGACTTTTTTG
AGACCTCTTTTTAAAGTTTCAGATTGATTTCCAGTGTTAAGTGGACGTCT
TTTAGAATTATTAAAATTTCAATCCAAACCATAAGATTAACCAGGAATCC
CATGCTTGTTATGCTTGTTTTCGTGAAATTCGGGATAAATTACCCTCGGT
CAAATTTCGAAATGTTTTAAATTTCCCTCATTGCACTCGAGAAATTTCAA
AACATTTCAAAATTGACCTCAGGAAATTTATCCCAAATTTCCCTCATAAC
CATGAGATTACTAGTACTTATTACCGTGAGTAGTCCTTAAATCCGACAGC
CCTGCCTAAATCCGACCCCCCAAATATCTGCTATGAAAAAAATTCTATGT
TTGCAAACATTCCCTCTCCAAGTTGAACAATAAACTATTGCAAGAACTCT
CGAAACAAAACATCTAACAAGATGACCAGAATGTCAAGATGCCAATTAAT
ATGATGAAAAAGTGTGAGTTGTAAAAATAATTACCTCTATTATTCTGAAT
CCGTTGCTTGTGTTTAAAACGTTAACAATTTCATAATAAAAAATCATGTT
TTGTATTAGAAGTCAATTATTGTTATTTGGTTCAATTGGTTCTAACAGTG
TATCAAATCTCTCAGTTTAGTTGACGCTTTGGTATCTTCATTGCGTCACA
ATGAAGGTTTGTTTTTATTTTCGTTTGTATCTTTGAAAGACACCATCGGA
TTTAGGCAGGGCTGTCGGATTTTGGACCACTCACGGTACCGCTTTCAATT
TGTGTGTTTTGAAAGTTTGGTGTATCTACTCAATCTTTGTTGAATTTCTT
AATGGCCTCGAAACAGAAAATGCCGGATAGATTTCTAAAAGGTTTTAATG
TTTTGTATTTTGTATTGGTTAGAGATATCTTTTATGGTCCTAAGAAACAC
CTGGGGAATGGCCAGTGCGTGTCAAAAGTCACAATTAGTGTGACATAAAA
CCTACTCCTTCCTCTAGAATGGCCATACTTGTTGTGTGTCTTTTCAAGCT
GAAAGAATTGAATTCCCTTGTAGCTCCTCCATCTGAGCTCTCATTAAAAA
TGACCAAAATTCTCATAATAACCAAAACTTACCAAAAGTTATAATAAATT
TAAAGTTCCAGAATAATGGCAACTTTTCCAATAATTGATGTATCAGCATT
GTCTGAAAAGTATTTGGAGGGAGATGGCTACCTGCAAGACATATCAAATG
ACCCAATAACCAAGGATATATCAGACCAAATTATCGATGCTTTTTCTCAG
TACGGGTTTATTTACATCAAAGGACATGGAATACCCGAAAACCAAATCAA
TGGAGTATTTGAAGAATCAAGAAACTTTTTTAAATTTGATTCTGAAACCA
AGAAAAGATTTTCAAGAACAAGTAATGATAATTGGGGATACGTTCCATAC
AAAGTTGAAACTTTCGAGAAAATAAGACCGTTCGATTTGAAAGAGTGTTT
TAATTATCTACCACTGACTGACAAAACTCAAGACATGAACGCGACAACAC
CGGACTTTATTTCTAAGAACACATCTTTTTATGGGGTGTGTAAAAAACTT
GGGGTGCTTCTAATAAAAGCAATTACACTGGGTCTGAACACAGACGATAA
AGTAAACTTTTTATACAACCACCACAATGGTATTGGGAATTTCAGCAAGA
ATGCTACAACATTACGATTACTTTATTATCCGGCTATTGAAGATAGCAGT
ACAGTTCTGGAACACCAATTGAGATGTGGAGAACATTCTGATTATGGAAC
AATCACATTGTTATTTCAAGACGATGCTGGGGGACTACAGGTTTATTAAA
TTAATATTAGATCTTTTTCCCCAACCTATTTTTTCTGATTGTAGGATAGG
ACAGTACAAAGGGGGTCTTTTACTCACAGTAGTATAATGGTTTGAAAGGC
TTCTTCCATAAAAATCTATACTCACGATATTTGAGTATATCGTTATGGTT
TTGAGTATATATATGCACCATTGCAATGTCTTCTGACATTACATCACGGA
CCCAATAGCTGATTGGTTGTAAGTGATGTAAAATTAATTAATACGTCACT
TTCAACCAATCAACTTTTGGTGTCTGTAGAATACATTGCAATGGTGCATA
TCATGAATAAAAAAGTTGCTTTAAAATTCCAACATTATGCCAATACCTAT
TACACGAAATAAGTCTAGACATGTGATTACCACAAATCAAGAAATTCTGT
ATTACTAAAATCAGCCGTTGCGTCCTTAAAAAAGCAAATAAAATTTGTGT
AATTGTGATAATTTCAAGGCAGTTAATTATGTGTCTATTTATTTTTGTGT
AATAAGGTAGTCTCATCATTGCCTTAATGTTATTTCAAGATGATAATGGG
GGATTATAGCTGTATATACACCAATCAACCCTTTATGGTGCGGTTGACCC
CTGAGAGGGTTGGTAATCAATTCACATGGAAATGACGTCTAAGTTAAATT
TGTCTATGAGAATGTCAATTCTAGAATATCTGATTGAAAGAGGCTATTTC
ACTCTACTGCTACTCTACCGCAGTGTGAAGGGAAAAGATTTTTTCCATAA
AAATATTTGTAAGAAGGCCTTGTTGAATAAAAAACCTGAAAAAACTTTAA
TTTTTATAAGAAGTCAGCCTGTCAGTCAGTTTGAAGGAATACCAGATATG
TCATATTTGTCTAAGATTAGATTGGATATAGAAATTTTATCGACCACCTT
TTAACTTTTAAAAAAGTTACTCCTCTAGGATCGAATAATCGAATAATGAC
CTCCTTAAACCCATGTTTAGTAAATAGTTTGCTAGTAAATACTTTTTTTC
AGAATAACCCAATATTTTTTTTACTTTCAGGTCGTTTCACCCAGTGGTGA
ATACGTAGATGCCAAACCAATCCCAGGATGCATTGTGGTCAACGCTGGTG
ATATGCTTCAAATCTGGAGTGGTCAAAAATTGAAATCAACACGTCACAGA
GTTGTCGTTCCTACTAATATCAATAAAGCAAGACAATCCTTAGCTTTCTT
TTTACATCCAAATAATGATTGTGTGGTGGAAGATTTGGTAAACAAAGAAC
AGAATGTAAAAACTAATGCTTGGGATTACTTGATGAAAAAGTTTGGAGAA
ACCTATTGATGATGGAGAGGAAAAATCATCCAAAAAAATTCCGTGTTAGT
TTCACTCGCGTACATATTTCACTTGCAAGGAGGAGGGAGGCTCTGGTCTC
TCCAGGCAACCTACATTAATACAAACACTAATGAGATATAGACGAAACCT
AGAGAAGAATTTTCAACCTTTCATAGGCGAGCAAAAAGGATTAATTAAAC
TTGCACCTCATTTTGGCTGACGGATTGAATCCAACAATTTCTTTGTTTCA
GATTACCATTTTTCGAATTCTGACGCGTAAATGTTAGTTCCAATCCAGCG
ATGATGGTTTTGAAAATTATATATTCAATCATATGGTCATAATATTTGAG
AAAAAAGGGAAATTCACCTGGAAGTTTTAAAACCACATTCGATTTGTAAG
TGCTCTAAAGTAGGTTGGAAGGGTACAGTTTAACACTGAGTTTTAACATG
AGACTTTAAGACTTAGGACCTTAGGGTCTGAGGATCCAAAAGTTCAAAAA
TGGTCCATTAAGGCTTCTAATATAGCCTGAAAGTCTATAAAACCGAGCCA
AATTGAAATATCCGATTAAATTTAAGAAATGGCCCAAAATCGACATTCTC
GCCCGAACTCCGAATTTCGTAAAACGAGGAAATAAGCTTAATAGCTCAAT
AGATTTCGACCATGAGCATGATTGTAGATGGGTGAGGGATAATACAAAGC
TGGTCTGAGCTGGTTCGTTCTATATGTTTTTAAAATTTTATTTTTGATAT
CTAGATAAAAACAATGTTAAACAATTTTGATGACAAAGTGGCTACATCAA
ATATAAAATTACATTACAGGCTGTTTTACGCCTTTCAAAGATCGTCTGTA
AGGTGTGAAATTCATAGTATTTAACTGTTTTAGGCTTTTTAAAAATATAA
TTTTATAATTGATTTTTATTTTTTGATATCATTATAATATATACTTCATA
CTTCATATACAATTATCTTGTCAAGTAAAAACCAATTTTCTCCATCTATG
TGAGAGTGTATACAAAATAGCATACTCAAGAAAAACACATCATATTTTTA
TGAACATTTCGACCATCAGACCTTTTTTCAACATAGAGATGGATTTATTT
GACAAGGTTTGTAATTCTTTATATGTGGAACATCTAGCTTCTTTATAAAA
TCTCAGCAACATCACTACTTTAGTCATAATCATTCGTATGCCAGTAACAC
GAACTGTCAAATTACTAACTTTCAATAACGATCATTACACTAAAAGAGGT
CGGCCAACGAAATCGTTACTTGACCAAGCTATGGAGTTTAAAAATGTTTC
ATTAAACCAATATTTTACTCTTGCCTTAAGCAAGAAAAAGTAATTTTGAA
GTTTTTTTCTTCTTTTTTGATAGCTCGACATAGAGTCGTAACTCTCTGAA
GTGAATAGGCCTCATGGGCGAGAGTCATGACTCTATGTCCAACCTTACCC
AGTAATGGGTGGTCAGGGGGGGGTTGGTACTAAGTTGTGGGGGCCAGTGC
CAAGTGGTGGTCTGATACGGTAAGTAAAAAACAACTTAGTACATGGTACT
AAGTGGTGGTCCTAATTGAAAAAACATTTTTGCAACTTTGTATCAAGGGA
CTAAATGGTGGTCTCAATACCAAATATGAGGCACCAAGTTAGTATCTGGT
ACAAAAAATCCTGAAAAATCACAAAAAATTTCTTATTTTAGGCAGTCAAT
ATTTATTTCTTACTAAATTATTAGGATATTTATTACGTTTATTGTTTATT
AAACTTTTGTTCTTTGTTTTCCCCTGGTTGTTATCATAGTAGGCCTGATT
GGTGTAATTATCGTGCAAATTCGGAACAAAGCACCAAATTTGGACCGGAC
ATGAAAAAAAATTTAAGGGTAGCCCTTATTTCTGGACCCATTTATTGAAA
ACCTAGGGTAAAGCCCAAGAGCTGATTTTTTATAGAAATTTCAAACTTAT
TTTAGGCCAAAACTAATTATAGAATCTGAAAGCTCTTGAAAAACTATGTA
GAAGACTTTTAAGCGAGTATGGCTGATTTCTGTACTGAACGGGAGTTATT
TGATGAAGAAGTGGTGGTTTCCCCCTCATTTTAGTCATAAATCGCTTATA
AAATAACACTTCTATATCAAATAACTGAGGCCCGGAAAACCCGAGTTACA
AAAACTCGAGTTACAAAAACCCGAGTTACAAAAACCCGAGTTACGACGAA
TGTGACGTCATAAGTCTCAAATTATGACGTCATAAGGGAACTTCTTAACT
CGAAAAAGTTTTTACTGTTGTTTTGTAACTCGAAATATTTTTTTTAAATT
TTGTTTTAGAGTTACGTAACTCGAAAATAAATTTTAAATTTCATTTTTCG
AGTT

Coding sequence (CDS) from alignment at sc0000116_pilon:611363..617466-

>MSTRG.14121.1.p1 ID=MSTRG.14121.1.p1|Name=MSTRG.14121.1.p1|organism=Clytia hemisphaerica_ch_hm2_pilon|type=CDS|length=1908bp|location=Sequence derived from alignment at sc0000116_pilon:611363..617466- (Clytia hemisphaerica_ch_hm2_pilon)
GTCGTTTCACCCAGTGGTGAATACGTAGATGCCAAACCAATCCCAGGATG
CATTGTGGTCAACGCTGGTGATATGCTTCAAATCTGGAGTGGTCAAAAAT
TGAAATCAACACGTCACAGAGTTGTCGTTCCTACTAATATCAATAAAGCA
AGACAATCCTTAGCTTTCTTTTTACATCCAAATAATGATTGTGTGGTGGA
AGATTTGGTAAACAAAGAACAGAATGTAAAAACTAATGCTTGGGATTACT
TGATGAAAAAGTTTGGAGAAACCTATTGAATGGCAACTTTTCCAATAATT
GATGTATCAGCATTGTCTGAAAAGTATTTGGAGGGAGATGGCTACCTGCA
AGACATATCAAATGACCCAATAACCAAGGATATATCAGACCAAATTATCG
ATGCTTTTTCTCAGTACGGGTTTATTTACATCAAAGGACATGGAATACCC
GAAAACCAAATCAATGGAGTATTTGAAGAATCAAGAAACTTTTTTAAATT
TGATTCTGAAACCAAGAAAAGATTTTCAAGAACAAGTAATGATAATTGGG
GATACGTTCCATACAAAGTTGAAACTTTCGAGAAAATAAGACCGTTCGAT
TTGAAAGAGTGTTTTAATTATCTACCACTGACTGACAAAACTCAAGACAT
GAACGCGACAACACCGGACTTTATTTCTAAGAACACATCTTTTTATGGGG
TGTGTAAAAAACTTGGGGTGCTTCTAATAAAAGCAATTACACTGGGTCTG
AACACAGACGATAAAGTAAACTTTTTATACAACCACCACAATGGTATTGG
GAATTTCAGCAAGAATGCTACAACATTACGATTACTTTATTATCCGGCTA
TTGAAGATAGCAGTACAGTTCTGGAACACCAATTGAGATGTGGAGAACAT
TCTGATTATGGAACAATCACATTGTTATTTCAAGACGATGCTGGGGGACT
ACAGGTCGTTTCACCCAGTGGTGAATACGTAGATGCCAAACCAATCCCAG
GATGCATTGTGGTCAACGCTGGTGATATGCTTCAAATCTGGAGTGGTCAA
AAATTGAAATCAACACGTCACAGAGTTGTCGTTCCTACTAATATCAATAA
AGCAAGACAATCCTTAGCTTTCTTTTTACATCCAAATAATGATTGTGTGG
TGGAAGATTTGGTAAACAAAGAACAGAATGTAAAAACTAATGCTTGGGAT
TACTTGATGAAAAAGTTTGGAGAAACCTATTGAATGGCAACTTTTCCAAT
AATTGATGTATCAGCATTGTCTGAAAAGTATTTGGAGGGAGATGGCTACC
TGCAAGACATATCAAATGACCCAATAACCAAGGATATATCAGACCAAATT
ATCGATGCTTTTTCTCAGTACGGGTTTATTTACATCAAAGGACATGGAAT
ACCCGAAAACCAAATCAATGGAGTATTTGAAGAATCAAGAAACTTTTTTA
AATTTGATTCTGAAACCAAGAAAAGATTTTCAAGAACAAGTAATGATAAT
TGGGGATACGTTCCATACAAAGTTGAAACTTTCGAGAAAATAAGACCGTT
CGATTTGAAAGAGTGTTTTAATTATCTACCACTGACTGACAAAACTCAAG
ACATGAACGCGACAACACCGGACTTTATTTCTAAGAACACATCTTTTTAT
GGGGTGTGTAAAAAACTTGGGGTGCTTCTAATAAAAGCAATTACACTGGG
TCTGAACACAGACGATAAAGTAAACTTTTTATACAACCACCACAATGGTA
TTGGGAATTTCAGCAAGAATGCTACAACATTACGATTACTTTATTATCCG
GCTATTGAAGATAGCAGTACAGTTCTGGAACACCAATTGAGATGTGGAGA
ACATTCTGATTATGGAACAATCACATTGTTATTTCAAGACGATGCTGGGG
GACTACAG
Gene-mRNA-Prot
This mRNA is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
MSTRG.14121MSTRG.14121Clytia hemisphaerica_ch_hm2_pilongene
The following exon feature(s) are a part of this mRNA:
Feature NameUnique NameSpeciesType
MSTRG.14121.1.p1.exon2MSTRG.14121.1.p1.exon2Clytia hemisphaerica_ch_hm2_pilonexon
MSTRG.14121.1.p1.exon1MSTRG.14121.1.p1.exon1Clytia hemisphaerica_ch_hm2_pilonexon
The following polypeptide feature(s) derives from this mRNA:
Feature NameUnique NameSpeciesType
MSTRG.14121.1.p1MSTRG.14121.1.p1-proteinClytia hemisphaerica_ch_hm2_pilonpolypeptide
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0000116_pilongenomesc0000116_pilon:611363..617466 -