MSTRG.14053.1.p2 (mRNA) -

Overview
NameMSTRG.14053.1.p2
Unique NameMSTRG.14053.1.p2
TypemRNA
OrganismClytia hemisphaerica_ch_hm2_pilon (Jellyfish)

Sequence
The following sequences are available for this feature:

mRNA from alignment at sc0000115_pilon:442150..451509+

Legend: five_prime_UTRexonpolypeptideCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>MSTRG.14053.1.p2 ID=MSTRG.14053.1.p2|Name=MSTRG.14053.1.p2|organism=Clytia hemisphaerica_ch_hm2_pilon|type=mRNA|length=9360bp|location=Sequence derived from alignment at sc0000115_pilon:442150..451509+ (Clytia hemisphaerica_ch_hm2_pilon)
AGGTTGTAATTGTCGAACTTATCTTTTTTAAACCTAATGCTAACATAGGA
ATAAATTATTATGAGTCAAGAAGAAGAGGAAAAGGAATGGGTTGAACAGC
TTGTTGCAGTTGAACTTGTTGGCATGATTGATCCTGATAAGTTGAATATG
ATTGACAAATCCAATAGCGCAATTTTGGTATGTATATAGTACCCTCCATT
TGGCTTACTTTCATAAAGAAAGGGTAATAAATAGAGCCAATCTGCGATAT
GAACATTTAAAGCtttgacaacaaaaaagttGTGTCATTGAATTGAGTCG
TGATACaatgttgaatttttatttGGTTGATAAGAACTTGTAACTTCCCT
CCATATTATAGTGTGAAATatgtatttttaatttcataatAACATTTCGT
ATTTCATTCTATGACACTTGTAAATCTGTTTTATACAGTTTTATATTGTA
TTCCCAGCAATCTTGTAACAAAATGTTTGAATCAAAGAATaatgttgaat
tttgatttgataggGCATTTCATCAGATGAATCAACAATTTTAAAGCTTG
GAGGATATGCTTTCAGTGGGAAAAATGAAGATGCAATAGGATCAATTGTT
GCTTTTGAGGATGTCAGCGATGAAGGGGAAGAGCCCAAGTTGAAATATGT
TGGACATACAACCAAAGTGATTAAAGCAAATcggatttttttgaaagaga
agaaaaaggaaaacagCGAAGAAGGGGATGTAAATGGCCAAGATCAAGag
aatgatgaaaatgaagaatagCTAAAGGTGTTTTTGAGGGCTAAGATATC
TGCTTTGAGACATACATTGTGATAGTTCAACTTCCTGGTGTACATTTGCA
AATTTGACTCTTCAAAAAAGATTATATTGATCTTTGGTTAATCACCCACA
AATACCAAATAATCAGTGTGATTAGGCTGTAAATCAAGAAATAAACTCAT
TCCTATAATAAGTTATTATAACTAGTATTTTGAACCTGTACGTATATATT
ATTAGTACCATCGATGGCAAGTTTTATAACATTTGAGCATATAGTTATTG
CCTGGAATAGTTTACAAAACtttagaaataaaattattaacaCCATAAAA
CGAATGAAAATTCTtgaccaaaaatgtttttctgacTCAATATTTCAATA
TATGATATATTATAACTGTATATTTATgtgttcaatttctttttatagaC
AATCTTAAATATAAACGAAGAAAAGAAGTATGAACGGTAAAAAAGTAAAT
GCTGTTTTGCCAGCTGCTGGTATTGGCACAAGATTTGGTGCTCAAAAGCC
TAAACAGgtaattttgaattgtttttagaCAAAGAAAAATCCCCTTTATA
CCTAAGGAACACATTTTGGCGGGCATTAAATATCctgaaataaattaatt
ttggtgggaacttattttggcgaatggcgaaatttttaaattttggcggg
aactaattttggcgaatgacagcgtaaatttgttctattttgccttattt
tgagcaactttgatgaatttcagggttctttaggcaaaaaaataaaaaaa
taaattttggcgggaactgattttggctaatttcgtctaaattcgtctaa
attcgccaaatccgccaaaattagttcccgccaaaattagttcctacCCC
GATTGCGATTGCCATTTTCtggctccaggcttttaggccttactcttggt
ctataggcactgctatgggcgaccactagtgacccccaccggcaAATCGC
TTTTTTATAGGTTTCTaaggtgtgaaaaagggacccttagaTCTCCCACA
TACCCGGTACCCATTTTGCTTAAGTACCCCCTCCTCGGgagttaaaatat
tttcataagaaCTCTCTGCTTtcattttataaatattttcaactgaCAGT
AAATTCAATCTTTCAAAGTTTTGTAAACTGAGGTTCGAAttatgtatatt
ttttgaataatttgagcCAAACGTGATGATTATAAAGatacacttttctt
tttctagttTACTGAAGTAGATGGAAAGCCTATCATTTGTTACACAATAG
AAGCATTCCAAAGGTTTggttcaaaacaaaatatttttggttgttTAATT
CATTGCGAATCATTCAATCTGCTAATTTTCGAAGAAGATAAATTGTATCA
CGGACTTTATTATacaaagtttctcaatcccggccaagcaaaatctttga
tcggagtttctTTTAAAGCCTCGATGCAATGCACCACTCACCACCACTAT
TGAGTGAGTGCACTCAATAGTGCTGCATTGCATCGaggcgctagatctac
ttttcctgggatacttttgatgatgtagcgctgtTAAACCTTACTTTTTA
ATattacaatggcttctttatgGTCAGTGCATTGTATCTATCTTTTTATG
ATGAATcacaaatttttggtttttatctTCATTCGAAGTGCCATCAATAT
AAAGTTTCAAGTTCAAAAACCTTGGCTTATTAAGGcttaaaaccaaacaa
aaaaaaccttgactaaaagtttcatttcagtcaaaaaatttaatgaagat
CAATGCAAAAGGAATTTTATGTATTcacattgtttttatttagtttagtA
TACCGTGGATAGAAAAAGTGGTTGTTGTCATTTCTGAAGATTGGATGGAA
TTTACTCAAGAAGtattttacttttcatcatcACAACACCTTTGATCTGA
GTCCGAATAacaatagcgagattatgtatctggaattctctacggctacg
ttTAAAGCGGtgagggaaatggcgagtaaggcaagtaatggcgggtgaaa
gcaagttcgatatttgacgtacggcattatgtcgactttgcttatacggt
gtattggtgtttttcccgtatagagcaaagtagacaacgacatgtcgcct
ttggtgacgacccgcatgggcagccccgcaaccccgtagccgtagaatat
ctccaatacataatctcgctaataaACCTTCCATTTATAGTTCTTGATCT
GTCATTGGcgagttttcttttttgaagacaGGGGAAGGACTTAAGTGATT
TGGAAAAATCTGCAGTTTTGACCTGCAAATTCGAGGGCGGTTAAATTGCT
GATTTATCGTCGTGTTCAGTCAGTCAGGTCTAGGCAAATTAGAACAGACG
TTTACGTCCTCGTTGTCAAACTCACACGTACAGAAACTCGCTATTACAGT
ACCCAGTTCCTTTATCTCCAGGCCTGTTTCCCATCTCGGTTACATTATAT
TATACTGGTCACGTTACGTAAATGTCACAGTAACATTAATTTTCGTTGTA
ACTAATTTTCGTGGAAAACAACTTTCTGAAATCAATTTTTGTCTTTTAGA
TCATTGACATCAACAAATATGATAAAGTTAAATTAGTTATTGGCAAAGAC
ACAAGGTAGTAAAACTTGACTCGTTGTCTGTAAGTGGCTGTCTTTTCGAA
TTGTGCTCTGAAGTGGAGATTTTTTAGGGAAAACATactaaaagataaat
ttttCGCAACTTGGATTTTCGTAACTCGAGTTTTCCAGGCCTCCACTTTG
AGGAAATACGTATcataataaatttcaaaagctgTCAAAAGTATTTCAAG
ATTCGACATACATATTTTTCATTAGACATCGAAGCATAAATGTTGGTGTC
AACTCAATAGAGAGTTCTGCAGATGATATTGTGAGTTTTTCTATAGCTGC
CTGTGTTTGAATAATTGAatgaggcgaaaataaaaaaatgtagtgtttcc
ggaaaccggccgggtgaaaagaatattttttctaacccggccgcagacta
tgggttcatctattatggttcatcataaagaaaatcaaaacgaccgttca
agctatcaaacgtcgtttggttagatattcctgcttgtaaatcaagtttt
gttcgttagtagttgatgcattagtattcagggcttacttcatactgttt
gtacataaaagttatgtttttaaagttctatttcaatgatcttaagttat
caaaaatagaaaaaaaaaattttccggccggctgCATGAGAGTTTTATtt
cttcacccgcattccggaaacactacatttttttatttttgccttatAAT
AAGATTTTTCCATATTTACAACCTGGTCTCGATTTCTGGTGGAATAGAAC
cagctaccttaaaggaagaaattttggcggaaagaaaatttggcggattt
ggcggatttgactgaaatccgccaaattaagttcctgccaaaatttcttt
tttccgccatccgccaaattgtctgtacacaaacccaatatctacggcta
atttcaaaattcattgccgtagaactacgctacgataatcgtgagataca
ctctggtacagagtatccgccaaattaaattcccgccaaattaaatattt
tgaaaatataatctcttttaaggtgtttttgctattttttcgctgttttg
acgccatcttaaggttaaatttttaagcgaccgccaaattaaattcccgc
caaatttagtttttccctccatccgccaaattaaattccctctgaaaaaa
cttttttggccatccgccaaattaaattcccgccaaaatttcttccttta
aggtagaacAAATTCATAGGACTCCATTTCCAATAGGAACCACAATGGGA
GTGATACAATTTCTCTATTTCATTACGATAATTAAAGGAGTGATTATAGG
GAGGCGGGCCGCTAGCTGAGGTGGGTGGATTTTCGAACGTTACGTCACAG
TTTTTAACGAATCAAATGGCTAAGAATAGATCATACCTTGCTTATAAAGA
GCCCCTTAATAGGGTTGCCAGGAGGAAACCAGGTTATTTAGAGCAGGATA
AAATGAGACACTTTTCTTTCCACAACCAAATATTTGTTGAATAAAACTCG
AAAAAACGGGGGAGGGATCCTAACGAGATCCGAAGGGGTTGTGAGTTTGT
AAAAATGGAATACTTAAGAAATAGGGGgtgtgtttttataagaaatctgA
GAGTTACAAATTCTTCGTTGCCGCctgaaaaaactatcagtgtagcctta
gcttaagAGTCTTAAAGGTCTTAAAGGTTAATTTCATAGCCAAAAAATAT
TAACTTCTGGAATTGAAATACGGTTTTCTCTTATTAGGTTATCGTGCATG
ATGCTGTTAGACCATTCCTTAAAGAAGATTTCTTGAAGCAACTTGTAGAG
CAAGCTATCATTAACAAGGTTTGCTACAAAATATGTACAAGATGCCCTCT
TCTATAAGAACCAGTAGAATTTTCTAACTGTCAGTTCTTATCAATGATGC
tatgagcctcattgttcttataatattATTCCTCTAACAAAATACATTTT
GTGattaaaatttagttttgaaATTGAACGATTGTCAATTTCgtttaatt
tcaaaaagtatgtCTCGCgtatcttcaaattttcaaacaaatttttttca
aatttaaggaGTGAAATCGACTTTTATAATTAacgaactttttttatttc
caaaaggCAGCAGGAGCTGTTCGAGCGTTAGTTTCAACGGTCGTCAAATG
TGATGTTGATGGATTTATGGAAAGCTCTCTTGTTAGGTAACTTATTTTTC
ATAACATTTTTAATTGGTCACTATTGGAAAAGAGGATGTCtcaaaacttt
ctgtttacggCGTTTTAAAAATAAGCTGTTGTAGTAGAAGATCAGCTCaa
acatataaaaaatacaGATATTTGAAGTTTAAAGTTCTGTCAATTGAGTA
CGATTAagtcaaatttttattaaaacgtAAGAGATTTCACAGGATTCGAA
CTTCAAACGACGATATCTTTTTGTGTGTTTGAGTACAAGAATTTCATGCT
TCATCTGATGATAACAATCATTCTCGTTGAATTTAACTTCGTCATCTTTT
ACCTTAATTTAGCGTTAAGAGATTTTTACTGTAAGGCGAAAATAAATATA
TGTTTcatttccggaatgcgggtgaaggaaaaaagttctCATGCGGGcgg
ccggaaaatatttttttttgctatttctgATAACTTTATATAACCGAACT
TATATATAAATATAGTGTAAATTCAGTCAATATGTGTAACTAGCTAACTA
ACGAAGCTCAAAGCTCCATTTAGAGGGCAATAACCAAATAACTTTATTGA
CAGATAGGGCAGCTAACCCACATATTGGtcgaaatgttgaaaaaaatgtc
TGCGGCTGGatgaggaaaaaaaatttcacccggccgctttccggaaacaa
gacatatatttattttcgcctaatgccagattttttattcataaaaacCA
GGCCAACTTTTCGGCGcccccctctcaaaaaagtttcattaTCCTATCTG
CACGTACGCAAAacttttccaaatatttgacatcCCTTCCCccttcattg
ttttttttttcagatcgCAGTATCGTGAGAGTCATACTCCACAAGCTTTT
CAATTCGAAGTCTTAGAAAACGCCTATAAACAGgtacaatttttgtttta
ttagggAATAAGTGTTATATACACAGAACCAGTTGGACACCCTCTTTTCT
GGAAAAGCGCGCAAAATCGTTCCTGCTGAGAAAAAGTACCCTGAAATCAC
AAAATCGAAAGATACATCATTCGATTTTGTGTCCTTAtccagggtgtccc
gaaaaaggTTTTATGTTAGACTATATCTACGATTAGAGTTGTAATAGGGA
CCCTGCCCTAACAACAGTCACGTCTTTGTATCTCTTGCCTGTGCGACCTC
TCCCCCTCATGTTGAATCGTGTGGTAAAATCTGGCGGTAAACTAAAACTT
ATAATTCTGTGGAGCCCATAACtggaacacgcacggggaatttaaatttg
ttcaagttaacgaaattttgagttatgtctGAACATTTATATCTgaactg
aaatgaaaaaagaacgtgttcgagttaaagagtaaactctagtttagacg
gccgactttctgccctgcctattctaatttttAGGGTAGGCagaaagtgg
gcacaaagttggcagttaatatctttgcttgaaaaagattgaaagaagac
attgcattgacgtcaaaagtgggcaatgcattgactttagacagcccact
ttaagcccactttaattcacaataatTAGAATAGGTAGAGCGAAAAgggg
gccgtctaaactagagctaattcGAGTTTAGGTTCGAGTTAAACACGAGT
TAAAGATGGtcaaagagactccactgtatattaAAAGACAACCGCGTGTA
ACTTTTAACTTGTTTGAATGCACTTTCAGTTTCTAGttattctctttttc
tttgttgtcAGTGTTCACAAGAAGATTTTAACCATGGTACAGAGTGTTTG
GATTTAGTTCAAAAATATTGTGGTGTTCGTCCAAAACTTGTCGATGGTCC
CGAATATCTTTGGAAGGTGtgatttctttatttatttcttatttacaGCG
AGGAAGCTTGACAAAATAAGAAGAATTGTCCTATATTCTAATCTAGCGAC
TCACTCAAATGAAATATGAGacaaatattttgcaaaaactTTTACACTTA
ATTTTCGACAAGAAACTTCTTAGCTTTAGCTTCAAAAAGAAGGGAAATTA
TTATACGCTAAGGGAACATTTTTGTCATTATTATGAGTACATGCACAATT
AAAGGATGTCATTTAACGTATcacctaccatttgcttactcaGCATTTTC
AAACCAACCAAAGAAAGGACAACTTCTCTCCCTGCGCgagttaaaatttt
gataaattattttgtttattctaCTTTGTCAGTATAGAGGCGCATTGATT
AGCACATGAATTCATTTGTTATTGTAAtaacccaaaaaaaaaaacactct
gagcatgttttttttcattttgttttcagGTAACTCACCAGAAAGATATC
ATTTTAATGGAATCGTTTTTACAACGTGAGTCATTATCacatttctttga
tttttacaATCGCTAAAATAGATTTGGATGAAATACTGCATTGCTTTCAA
TCGTGACGTTTTTTGACGACATGGTGCACCTGCATTAGGTGAATGGGGGA
GGGGCATGATTAAACAATAGGAGCTGGTCTGAGGAAATGTTTCAAATTTG
ATAACCAGGTATTTTGTGAaggtgaaaaatcaatttattttgagCAAATA
AGGCACTTTCCCGCCCCCGGAGGGGTACCAAGGTAAAAGGAGGGTAGGGC
TATGTGTCGCCCCAAACGGTTCGTTTTTTAGATCTTCACAAAATCCCAAT
AAGGGtcatgaaaatattattttcatgtcttttgtcgttttttgacgttt
tatcGAATAATTCGAAAAGTAAGTGTTTAGAGaaaaaaaCGTGGCAAGGT
ATTTTTCGTCTATTATTCTGGATCATGATCatataaaaagttttattaaa
tTGCCTACTTATCACTTTTTGAAGATGACATGGTAATCTTTCTTTTGTCA
TCTTTTATTCCTTTgtcaaattgacaaaatttattgttgtcaGCCTTAAT
CGATAGAGAATTTAATAAGCTTTTCAAAATATACTTTTACTATTGAAATA
TATTTGTATCGAAAGCTGTTAATAAAAGAGTCAAGTGTGGTGTCGAAGGT
TTCCACCTTTCCATACCTTAAGACCTTATAAGGGTTCTAAAAACAGCTCA
AATTCCACATCGTGACCCTCAAAAGacaaaattttaagtaaaatagTCAT
AAAATTTACAACAATTTGTGTTTTTCCTCGATTTAAGCCCCTCTAAGGGT
CTCCGTTTTGATGGTCCTTCTAAGGGCCCGGCTGCCAAAAGTCGGTTGGC
ATGGCACACACCCGTCATCCcgcaaaccccccccccctctgacTTTTTCT
CACTGTTGAAAATATAGTAAATAGTAAGAAACATCAGAGGGCTGTTCATT
AGGCACCATGGTAAGTGAACGTACGAGCAGAAACATAAAAGgttatctct
tttttttttcaggagaaAAGGAGCATCGATGACTCAAAGGCGGACATTCG
ATTAGAAATGATTATTAaatgaattttagtgaaatttcgtacattatgat
tgttttaatgaattgaatttttattttttgttttaaaattttatatattt
tttgatatttttagcaatattgtattgacccaattttatttaatatatcG
CACGAATACTCATAAAATTGATGTGTGTTATTCCTTTATAcatatttgaa
acattttctgATTTCTCTTTCCTAGATATATAATACATCCTAAAACATAT
AAGGTACAAAATTTAGAATGATATATCACTTTTTTACTTCGGATTTATAG
AGTTAACGAGTTAAGTGATACACATAATTTATTGTATTTGAGCAAAAACT
ATATATACAT

Coding sequence (CDS) from alignment at sc0000115_pilon:442150..451509+

>MSTRG.14053.1.p2 ID=MSTRG.14053.1.p2|Name=MSTRG.14053.1.p2|organism=Clytia hemisphaerica_ch_hm2_pilon|type=CDS|length=750bp|location=Sequence derived from alignment at sc0000115_pilon:442150..451509+ (Clytia hemisphaerica_ch_hm2_pilon)
ATGAGTCAAGAAGAAGAGGAAAAGGAATGGGTTGAACAGCTTGTTGCAGT
TGAACTTGTTGGCATGATTGATCCTGATAAGTTGAATATGATTGACAAAT
CCAATAGCGCAATTTTGgGCATTTCATCAGATGAATCAACAATTTTAAAG
CTTGGAGGATATGCTTTCAGTGGGAAAAATGAAGATGCAATAGGATCAAT
TGTTGCTTTTGAGGATGTCAGCGATGAAGGGGAAGAGCCCAAGTTGAAAT
ATGTTGGACATACAACCAAAGTGATTAAAGCAAATcggatttttttgaaa
gagaagaaaaaggaaaacagCGAAGAAGGGGATGTAAATGGCCAAGATCA
AGagaatgatgaaaatgaagaatagATGAGTCAAGAAGAAGAGGAAAAGG
AATGGGTTGAACAGCTTGTTGCAGTTGAACTTGTTGGCATGATTGATCCT
GATAAGTTGAATATGATTGACAAATCCAATAGCGCAATTTTGgGCATTTC
ATCAGATGAATCAACAATTTTAAAGCTTGGAGGATATGCTTTCAGTGGGA
AAAATGAAGATGCAATAGGATCAATTGTTGCTTTTGAGGATGTCAGCGAT
GAAGGGGAAGAGCCCAAGTTGAAATATGTTGGACATACAACCAAAGTGAT
TAAAGCAAATcggatttttttgaaagagaagaaaaaggaaaacagCGAAG
AAGGGGATGTAAATGGCCAAGATCAAGagaatgatgaaaatgaagaatag
Gene-mRNA-Prot
This mRNA is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
MSTRG.14053MSTRG.14053Clytia hemisphaerica_ch_hm2_pilongene
The following exon feature(s) are a part of this mRNA:
Feature NameUnique NameSpeciesType
MSTRG.14053.1.p2.exon1MSTRG.14053.1.p2.exon1Clytia hemisphaerica_ch_hm2_pilonexon
MSTRG.14053.1.p2.exon2MSTRG.14053.1.p2.exon2Clytia hemisphaerica_ch_hm2_pilonexon
MSTRG.14053.1.p2.exon3MSTRG.14053.1.p2.exon3Clytia hemisphaerica_ch_hm2_pilonexon
MSTRG.14053.1.p2.exon4MSTRG.14053.1.p2.exon4Clytia hemisphaerica_ch_hm2_pilonexon
MSTRG.14053.1.p2.exon5MSTRG.14053.1.p2.exon5Clytia hemisphaerica_ch_hm2_pilonexon
MSTRG.14053.1.p2.exon6MSTRG.14053.1.p2.exon6Clytia hemisphaerica_ch_hm2_pilonexon
MSTRG.14053.1.p2.exon7MSTRG.14053.1.p2.exon7Clytia hemisphaerica_ch_hm2_pilonexon
MSTRG.14053.1.p2.exon8MSTRG.14053.1.p2.exon8Clytia hemisphaerica_ch_hm2_pilonexon
MSTRG.14053.1.p2.exon9MSTRG.14053.1.p2.exon9Clytia hemisphaerica_ch_hm2_pilonexon
MSTRG.14053.1.p2.exon10MSTRG.14053.1.p2.exon10Clytia hemisphaerica_ch_hm2_pilonexon
MSTRG.14053.1.p2.exon11MSTRG.14053.1.p2.exon11Clytia hemisphaerica_ch_hm2_pilonexon
MSTRG.14053.1.p2.exon12MSTRG.14053.1.p2.exon12Clytia hemisphaerica_ch_hm2_pilonexon
MSTRG.14053.1.p2.exon13MSTRG.14053.1.p2.exon13Clytia hemisphaerica_ch_hm2_pilonexon
The following polypeptide feature(s) derives from this mRNA:
Feature NameUnique NameSpeciesType
MSTRG.14053.1.p2MSTRG.14053.1.p2-proteinClytia hemisphaerica_ch_hm2_pilonpolypeptide
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0000115_pilongenomesc0000115_pilon:442150..451509 +