MSTRG.13979.11.p1 (mRNA) -

Overview
NameMSTRG.13979.11.p1
Unique NameMSTRG.13979.11.p1
TypemRNA
OrganismClytia hemisphaerica_ch_hm2_pilon (Jellyfish)

Sequence
The following sequences are available for this feature:

mRNA from alignment at sc0000114_pilon:716783..720942+

Legend: five_prime_UTRexonpolypeptideCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>MSTRG.13979.11.p1 ID=MSTRG.13979.11.p1|Name=MSTRG.13979.11.p1|organism=Clytia hemisphaerica_ch_hm2_pilon|type=mRNA|length=4160bp|location=Sequence derived from alignment at sc0000114_pilon:716783..720942+ (Clytia hemisphaerica_ch_hm2_pilon)
ataaaatttatGTTTGAGATAGACCTCGTATTTATTACTCATGGTATGGG
ATTGACTTTTCAATTTTAAGTTTATTGATTTGGTTGACAAGACAGAGATC
AACATAGAAAGTTTGGAATTGAACTAGGCTAGGGCTACTTCCAAAGGCCC
TGTTTAAAAGGTGGGTGTGCATAAATTACAGTAACAAGCAattgtgaaat
taaaaataaaagtaacatGAGTATAATGACTTTACCAGCAGAATGCTATT
TGttatgaaatttcaaatataaaaCTAGCGTTAATGTATTTAACAGCGCA
GTACGAATGCAGCAAtcgaaaatagtttttttcagACATTTTGTATAGAA
ATAACTTTTATTCGTATAGTTCGTTCACCAAGTCATGTCATGCAGTTTCA
GTGACGTTCGGATggacaaataaaattttttatttggttaatATTTTGTA
TGGATCTAGGTCAGAATTGCGAGGTAATATTTTGGAATGTATTTTACTTA
CATGGAGTTTTAACGAGGATTGGGATCTAGTTTACAGCACCGAGCACGAA
GAAGATGTCATTGCGCATTCGACACTATTGAACTTCTGGGGCGTTAGGAT
TAATGAGTGTTTTCAAACATAAGGCTTGTATTTTCAGTTGGaattcaaaa
aaggaaaattcaaaacataaaacttGAGAGAATTATAGCTTTTGCAATAT
AACAATAGCCGACATCCTGGCGTGTTGACAAATTAGGATTTTTGCAGCAG
TACAGCTTTTCATGTTACTAACAAATACAATAGTGATTAGCATCAGAGCT
AGGATCTGATTAAGAGGGATCATATAAGTTCCTAATGTgtacataaaaaa
aattgtatgcGCGTGTAGaaaatgctaccaaaaataccttgaaaatctaa
aagaaagtaaaacctgtaaagaccaaagTTCATTTTAATGCAAAAGTCAT
TAATAGCTTTGTTTGAATACTTCTGCTTGTAAAGATTCGGtttaaaaaag
tcttttttagTGTAGAAATTCTTAGTACAGTAGTCGGAGACAGTAGCTAA
TTGAGTGTATTATCGTGTCTTTCAGTAATCAGGTACAgtttatcattaaa
aaaacttaaatcaTGAGAATATTGTTTATTTGATGTTACTGATGAGTTCA
AAATCTCTACTTCTGCAACAGTTACAGACGGACAATAActctacattttt
taaataggtGAAACAACAATCTCTCTCTCAAAATTTTAGTACAAGGTGAT
GAAATACATGTTACAAGACAGTTGATATAGAAATAACTCAATTATCACTT
TTTCCCTAAAGGGAGTGGTAATACAAAACGGAGATCGGCGTTTTGATATA
AATAATGGGGCACAAAGCGTTCTCGATCAAGGTGTTGAACAAAGTGTCAG
ATTTAATATCAATTTGTCAACCGTTTCACCAAACAAAACTTGACTCTAAA
catatatacaaaaaaattgtttgaaagttGTTAACAACAAAAAACTGTCA
AATAATATGGAAGACATTAAGACTTCTAAAAACTTTTGTGGTTTTTTAAA
GAGATCAATTCGCTGTGAATGAAAAGATAAAGGATGACACACTAtgaatg
aatttcaaaaaaaatacatttgagTGAATTTGGagagattttcgaataaa
aaactAATCTTGAAGAAAAGGAATAAATCTCCAGTGTCCGGCAAAGTTCT
GAAAACAGTACTGGAGCTTTCAAAGCAACAAGGCATCTTAGACTTTTAAA
GAAGACCATTCTACTCGTGTTTGCTAGAGTTTTGACTTGTTTAAGCGGTT
GCTAAAAAGTCACTAAAGACAAGTATAGACTTAGAGAAACAAAAACTTAA
AGGCTatgtttgtttctttttttagcCTGCAGTATCGCCACCACCGGAGA
AGAAAGGAATCAAGATGATCCGGACTTGTCAATTGTTCTTGGTTCTCGTC
CATAGAACATTCTTATTTGCAGCTGTTCTCATTGGAGGAACCTACGCCAT
CAGAGCTATCGAGAACCACTATCGAGAATCGATTTCTCATATGGAGCTGA
AAGATGCAGCTGAATATTGCTATACCATTCTAACGACCATAGGTAAGtct
taatttaaaatttgaatgttaAAGAATGTTAATCATGACAGTAGAGCCAT
CGCTTTAATCAAGTTGGAGAATAAAAGAAGTTACTGAAACAACATAAGAG
TTTTGTAAGGAAAACAGTATTCACTACaaaaaaaCTTATTAAAATTTGAC
CATTTCATATCAACACCAAGGGAACTCACAACTTGACATCACTTCACTTG
CTAAACTTGAGCTTCCAATGCCGTGATAgcaattgaaaattgatccctCT
AGTATAGAAATTCTTGGCTACCAATtatctcaaaggtaacgaatcaaATT
TACACAACTACTTAGTAATCATCTTTTGCTCGTTCAATTATTTCAGGTTA
CGGCCGTGAGAAAACCCTCCCTACATCAGACTGGGGCAAAGTGTTCACCA
TTGTCTACGCAATCATTGGTATACCAGTCGCCATTTTCACTGTCGGAGCA
TACGGAGCATTCCTGAAGCATTGTGTGTTGAAGTTAATCATTGGTTTAGA
GCACTGTTGTTGCTCATGCTGGCAAGGCAAGAAAATGAATCTCAAAGTGC
TTATTATATTGATTCTCCTTTTCATTGcagagttcttttgttttggagtC
TACGTTTGCTGGTTGGAAGACAACAACCAATGGAattatttagattctgt
ttacAGTTGGTTTCTCACCATGACAACCATTGGATTTAAACAACACAACC
CGTACCCAGACCACTTGGATCTGTTACACGCCTTGGCCTACCTGGTTACC
AGTCTATTCAGCATCATAACTCTGGCCGCCATCTTTCAAACCGTTCAACA
AATGATTGACGCTGTCCACAACCAAGATCGCAGCATCTGCGCCATGTTGT
TTTGTTGTTATAGCAACAATAAGAAAGATGCATACCCAATGGATAAATAC
AATTCGAATCATAGTATGCGATATGCAGAATATCCTCATGAATAAACAGA
CCATTAAAGCACTTATGTTGAGAAAATATTAACCAAAATATTTATGGATG
GTTGGCTGGAGATTTCTGGAAGtgaataattctaaaaatgggattttaag
actttcagacttttaagagtaaaaaaacaattattcaAAATGGACAAAAG
AGCTGAATCGAGAGTCaagatttttcatgaaattattcaacatgaatTAA
GCTGATGAATAATGATTAATAACTGTAACTgcaaacaaatattttcataa
cATATGGTCTTGGTTTGCAATTTGAGTTTGAATTCAAAAGTTCACACCTG
AAAGTTGCATTCAAGAAGCTaaactttcaattaaaaagcTATAATAGAGT
ATGGTTTTAGATATGAAAACGTATCAATTTCCTAGATTAATAAATATAAC
AAAAGTTAGATAGTCGTTAATTGTAAAGAGTAATCTTAAAAACTTCCATC
ATTTTTTGAAGCGTTTTGAAAACTTGAAGACCTTAGtttttttGATCAAT
AATGCAATATGAAACGAAGCCAAATTTGATCAAATCTGGTATATCTTgaa
gttgtgatttttttgcattggtatttaaatttaaaagatcCCTTGCATTA
ATCAGTGACTTCAAGCTGGGTACAGTTGAATGAACCATaaaaaaaCTTGC
CTTTTACTGGACTTTTAAGCCAAAAAGGCACAAAAAGAGTAATTTTGCAG
CAAAAGTAGAACTTATTTTGAAATGACAATAAATATCATaacaatttaga
ttttttttatcaaaagatgtattatattataaaagaagaagttattataa
aattttagaataaccaTTTTTAAGCAGTTAAAACTGCCTTGAAATAGTTG
TGTAGCCTCTTGGTATAACACTTGctgtacaaaaatttttgttttgcttt
gtcgtttttgctttttttaagaatagaaattttagtttcttttttctcat
tttatttgtttttttattgataatgtgAATATATAACAAATTTAAACAAG
GAAAACATGGAAGGTTATTCATATTTAATGACATAAAGGGATAAACCAGC
CACACTAAAATTTAGTCAAATTCTTAGGACAAAAACACATTCATTTAAAT
CCAAAAAGCT

Coding sequence (CDS) from alignment at sc0000114_pilon:716783..720942+

>MSTRG.13979.11.p1 ID=MSTRG.13979.11.p1|Name=MSTRG.13979.11.p1|organism=Clytia hemisphaerica_ch_hm2_pilon|type=CDS|length=1554bp|location=Sequence derived from alignment at sc0000114_pilon:716783..720942+ (Clytia hemisphaerica_ch_hm2_pilon)
ATGATCCGGACTTGTCAATTGTTCTTGGTTCTCGTCCATAGAACATTCTT
ATTTGCAGCTGTTCTCATTGGAGGAACCTACGCCATCAGAGCTATCGAGA
ACCACTATCGAGAATCGATTTCTCATATGGAGCTGAAAGATGCAGCTGAA
TATTGCTATACCATTCTAACGACCATAGGTTACGGCCGTGAGAAAACCCT
CCCTACATCAGACTGGGGCAAAGTGTTCACCATTGTCTACGCAATCATTG
GTATACCAGTCGCCATTTTCACTGTCGGAGCATACGGAGCATTCCTGAAG
CATTGTGTGTTGAAGTTAATCATTGGTTTAGAGCACTGTTGTTGCTCATG
CTGGCAAGGCAAGAAAATGAATCTCAAAGTGCTTATTATATTGATTCTCC
TTTTCATTGcagagttcttttgttttggagtCTACGTTTGCTGGTTGGAA
GACAACAACCAATGGAattatttagattctgtttacAGTTGGTTTCTCAC
CATGACAACCATTGGATTTAAACAACACAACCCGTACCCAGACCACTTGG
ATCTGTTACACGCCTTGGCCTACCTGGTTACCAGTCTATTCAGCATCATA
ACTCTGGCCGCCATCTTTCAAACCGTTCAACAAATGATTGACGCTGTCCA
CAACCAAGATCGCAGCATCTGCGCCATGTTGTTTTGTTGTTATAGCAACA
ATAAGAAAGATGCATACCCAATGGATAAATACAATTCGAATCATAGTATG
CGATATGCAGAATATCCTCATGAATAAATGATCCGGACTTGTCAATTGTT
CTTGGTTCTCGTCCATAGAACATTCTTATTTGCAGCTGTTCTCATTGGAG
GAACCTACGCCATCAGAGCTATCGAGAACCACTATCGAGAATCGATTTCT
CATATGGAGCTGAAAGATGCAGCTGAATATTGCTATACCATTCTAACGAC
CATAGGTTACGGCCGTGAGAAAACCCTCCCTACATCAGACTGGGGCAAAG
TGTTCACCATTGTCTACGCAATCATTGGTATACCAGTCGCCATTTTCACT
GTCGGAGCATACGGAGCATTCCTGAAGCATTGTGTGTTGAAGTTAATCAT
TGGTTTAGAGCACTGTTGTTGCTCATGCTGGCAAGGCAAGAAAATGAATC
TCAAAGTGCTTATTATATTGATTCTCCTTTTCATTGcagagttcttttgt
tttggagtCTACGTTTGCTGGTTGGAAGACAACAACCAATGGAattattt
agattctgtttacAGTTGGTTTCTCACCATGACAACCATTGGATTTAAAC
AACACAACCCGTACCCAGACCACTTGGATCTGTTACACGCCTTGGCCTAC
CTGGTTACCAGTCTATTCAGCATCATAACTCTGGCCGCCATCTTTCAAAC
CGTTCAACAAATGATTGACGCTGTCCACAACCAAGATCGCAGCATCTGCG
CCATGTTGTTTTGTTGTTATAGCAACAATAAGAAAGATGCATACCCAATG
GATAAATACAATTCGAATCATAGTATGCGATATGCAGAATATCCTCATGA
ATAA
Gene-mRNA-Prot
This mRNA is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
MSTRG.13979MSTRG.13979Clytia hemisphaerica_ch_hm2_pilongene
The following polypeptide feature(s) derives from this mRNA:
Feature NameUnique NameSpeciesType
MSTRG.13979.11.p1MSTRG.13979.11.p1-proteinClytia hemisphaerica_ch_hm2_pilonpolypeptide
The following exon feature(s) are a part of this mRNA:
Feature NameUnique NameSpeciesType
MSTRG.13979.11.p1.exon1MSTRG.13979.11.p1.exon1Clytia hemisphaerica_ch_hm2_pilonexon
MSTRG.13979.11.p1.exon2MSTRG.13979.11.p1.exon2Clytia hemisphaerica_ch_hm2_pilonexon
MSTRG.13979.11.p1.exon3MSTRG.13979.11.p1.exon3Clytia hemisphaerica_ch_hm2_pilonexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0000114_pilongenomesc0000114_pilon:716783..720942 +