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Sequence
The following sequences are available for this feature:
mRNA from alignment at sc0000114_pilon:600266..604055+ Legend: five_prime_UTRexonpolypeptideCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below. >MSTRG.13971.1.p1 ID=MSTRG.13971.1.p1|Name=MSTRG.13971.1.p1|organism=Clytia hemisphaerica_ch_hm2_pilon|type=mRNA|length=3790bp|location=Sequence derived from alignment at sc0000114_pilon:600266..604055+ (Clytia hemisphaerica_ch_hm2_pilon)
CCGCAATGAATGGCCGATTATCATATAAATAGGGGCAGACTACAGAGAAG
AAATCAGTACAAAACGTAAACTGAAATAGAAAGACAACTaaaaaaaCAGT
GCAGGTCGCTGGAAAACATATATTTATACATCAAAACTTTGTAGATCAAA
GTCATCAAATACaatcaaaaaagacaaaatcaaGGATACAAGCTGAAAAT
TAAGGTAAGgaatattttgtgatttttttcatatattttgctgttttttt
tcatATACTCTTGCtggtttttacatttctctcgACAGTTTGTTTGGATT
TGTGTCTAACTTCCAACTTAGAAATATGATttaaactaaagtctgttcac
gataagtgtgcactcttttttcttttacctataacttttgaaggaattct
tcaatctttataaatttggtatcgttggagagatatttgtgagtggaaca
atttgaaataaaaaagtctttgaaaaaattctaaaaacgaaggtgaaaat
gaagaagaaaaaaatgaagatcttgtagagaagtgctataactttcattt
tcaccggagagattctttgatcttaggagatcatcactgtgaagaaattt
cactaaaatatttattcaatataaagttatgatacaaagttaataagtga
gtgaccccaaaaaacaacagaaaacagcagaaaacagcgtttttagacgt
caatcagcttataactttgcttgatatcttttgactgaatgattattttt
gagaaattttttcacagtgatgatgttcgataatcaaggattcacttcaa
tgaaaatgatagttatagcacctttctacaagatcttcatttttttcttc
ttcattttcagaatttgtttaaatttttttttatttcaaattgatccact
cactaatatctttccaatgataccaaatttataaagattgaagaattcct
tcaaaagttataggtaaatgaaaaaagagtgcacacttatcgtgaataga
ctttagtgaTCCTAAATGATTCTCTTCTCTGTGTTTCATTTGATCTTTCA
AAttgaaaacccttttttctggaaattatATTTTCGATCTTTAGTAATGA
CCGATCggtgttttattttttagaaatcatTACAAAGACATCTCAATCTC
AActgaaatcaaaaacaaaatggtagcacAACAACAAGTTCAACCTGAAA
TCACCATGGAAACCATGGGCGGAACACTGACTGGCAGCCAGTCTAGATAT
GATCCTTTGGTTCATCCAGACATCGAACTTTCATCCACAGACATCCCAAA
ATTCACCAAAGGTGATAAAATCATTTCCAACTTATTCAAGAAGATCGACA
AAGACGAGTTGATCACAGCTCCTTTACAAGCACAACCTGAAACGATGCAA
TTCTTCAACAAAGTCTTTGAAAACATCGTTGAAACAAACGACGTTGGACA
ACTTGACGGTCAAAAATGGGAGACCTGGAACGGTGAAACGAAAAATGAAG
TGACAATCGAACGAGATTACAAAGGATTGGAGATCAGTGATAAATACATG
GCACCAATGGATGTTTATGTTGGAGGTCCTGCAACTTGTTTTGGAGCTGC
TCTTCAAGCCAACTCTGGTGAAAATGCCAAGAATATCTTGTATGCTCATG
ATGGATGCAGAGGAACCAGCAATTGGAAAGGAAGTGCAAGTTACCATCAC
GTTCATGATGCTATACCTGTTTATTACTGGCCCAACAACCATGGATTATA
CTCTGCTTACATCACAGCCAAACAtcatttccaaaagaaatttaatCTGG
AAGGTTACAAAGAAGAACTGGCAACCATCCCACAATGGTGTAAGATCAGA
TGGAATCTTGGAAACACATTGTTCACCAAAGATGCTTGGAAGAATATCAA
ATTATTCGCCAAGAATCAGAAAGAAGCTTTGGGTGATGTCGGCTTTTTCA
TTGAAGGTATGTACCAACGATAAACTATTCACATTGCTACTTTTATCGCT
CCTGTCTTATCAGCTTTAAGTCATAATCGTCGAAGTTTGATAAATTTGGC
AATAATAGTTTCCCTATCTCAATAATCTAGTAAGTATTAATGTTAAAACA
GCTCTATCCATCTCTCAGCCATTGAAAGAAGGATCAAATTGTAATAATTC
TTAATTTAACATTCCAGGAACGCAATGGCGAAAAGACGAGGACACGACCG
CATACACAACTATCCGACATTCGGGTATGTCCGAGAAAATCGTCGAACAA
CTCAAAGGATTGGAAAAACCTGTTCTCATCACAAATGATGATCGGGCCAA
ATGCACCTATGTTCAACTCGGTTCAAAACAAGGTTTAGCCTGGATCAACT
CCACTTTAAAGAGGCTAGACCGAGTTGGAGGCGATGCTGTCGAGTTCTTC
GAGAACAGCAAAGAAGAGATCGAATCGAGAGGTTATCCAAGTGATTTTGT
GGTCCAACAACTCGAGTTTCCACAACATGGTTACTTCCCTCCTTACGCAC
CAAACGctttggaaaatttggtcaaaactaAAGGAGGTAATGTTCGTGAT
GATATGCGATTGGAAAAACTCTTTGTCATGCCCTCCAATCAAGATTACGA
TGACGTCACAGTCAACAAAGCACAATTCCGTAACCTGACAACCGGACAAG
CAGAAATCGTACCGGTCAAGTCCATCTCCATGTCACTCGGTCCAAGCATG
AAATCGTTGTCAGTTGACGGTAAAAACTTGTTGAATCACACCATGTATGC
TAGTGGAGCTTCTACTGTCTTCATGGTCAAAGTGGATGAATCGAAAGTGG
ACCAATCACAGATGTTGAAATTTCGTGATAACATTGACATGAAGAACAAC
CATATTGTTCGTCTTGGTGAACGAGTCGTCAAAGATGCTGACTCAGGAAA
ATCTTATCGAATCTTTGTTTTGCAAGTGACCGGCGGAGGACATTTCCCGG
CACGACACGCTCACGCCGAAGCTGCCATCAACACTTTCAAAGCTTGCACA
TGTCAACTGTTCAAATTGGACGGCAAAGATGCTACAGAGGGGATTGAGTA
CGAAGTTGTTCAAGTCAGATCATGCGCTCGAAGTGTCGGTTCCCAAAACG
TCTTTCGCCTCAACCTTCCAGCAACCAATGCTGCAATGCTTTATGGGATC
GGTGGTATCGGCATCACAACAATGGCTCCCAACGCCCTTCTAATGAGAGC
TGCGTTGACCGAACGTGCCAAACTCGGAAATCCTCAACTTGAGTACAAAC
CAGAAGAatataagaataatttgagtCAAGGACAATTTGCTCAGATTCCT
TATTGGAATAAAGAGAATCCATTTTCAGGGCGTAATTACGCCAGATGGGT
GGATCACGTCAACCAACCAAAACAAGTGGCGCCCATTTTATACCCAAGTG
CACCAAAACTTCCACAATTCGCATATGCAAAACAATATTCAATGGTTTCA
CAAATGGCTCGCTTGTTCAACAAGACCAAACCATATGTTCGAAAATTGAT
CtaaaaaactatgaaattacTTAGAAAATGCCTTAGTTGGTCTTGCTTGT
GAGatcatttatcatcctattgtacgtattacatttttgtattatattta
tcataaattatattttaaaaaacaattataccatagttttattttattgc
CGATTTACCTTGACACCTTCTTAACTAGAAACTATCAAAttattttatca
agattttattttaaacacttttatatttaagttaactgtacaaaaatatt
tttcttatcaaattaaaataaatctaaatttaCTTGGAAA Coding sequence (CDS) from alignment at sc0000114_pilon:600266..604055+ >MSTRG.13971.1.p1 ID=MSTRG.13971.1.p1|Name=MSTRG.13971.1.p1|organism=Clytia hemisphaerica_ch_hm2_pilon|type=CDS|length=4248bp|location=Sequence derived from alignment at sc0000114_pilon:600266..604055+ (Clytia hemisphaerica_ch_hm2_pilon)
atggtagcacAACAACAAGTTCAACCTGAAATCACCATGGAAACCATGGG
CGGAACACTGACTGGCAGCCAGTCTAGATATGATCCTTTGGTTCATCCAG
ACATCGAACTTTCATCCACAGACATCCCAAAATTCACCAAAGGTGATAAA
ATCATTTCCAACTTATTCAAGAAGATCGACAAAGACGAGTTGATCACAGC
TCCTTTACAAGCACAACCTGAAACGATGCAATTCTTCAACAAAGTCTTTG
AAAACATCGTTGAAACAAACGACGTTGGACAACTTGACGGTCAAAAATGG
GAGACCTGGAACGGTGAAACGAAAAATGAAGTGACAATCGAACGAGATTA
CAAAGGATTGGAGATCAGTGATAAATACATGGCACCAATGGATGTTTATG
TTGGAGGTCCTGCAACTTGTTTTGGAGCTGCTCTTCAAGCCAACTCTGGT
GAAAATGCCAAGAATATCTTGTATGCTCATGATGGATGCAGAGGAACCAG
CAATTGGAAAGGAAGTGCAAGTTACCATCACGTTCATGATGCTATACCTG
TTTATTACTGGCCCAACAACCATGGATTATACTCTGCTTACATCACAGCC
AAACAtcatttccaaaagaaatttaatCTGGAAGGTTACAAAGAAGAACT
GGCAACCATCCCACAATGGTGTAAGATCAGATGGAATCTTGGAAACACAT
TGTTCACCAAAGATGCTTGGAAGAATATCAAATTATTCGCCAAGAATCAG
AAAGAAGCTTTGGGTGATGTCGGCTTTTTCATTGAAGGAACGCAATGGCG
AAAAGACGAGGACACGACCGCATACACAACTATCCGACATTCGGGTATGT
CCGAGAAAATCGTCGAACAACTCAAAGGATTGGAAAAACCTGTTCTCATC
ACAAATGATGATCGGGCCAAATGCACCTATGTTCAACTCGGTTCAAAACA
AGGTTTAGCCTGGATCAACTCCACTTTAAAGAGGCTAGACCGAGTTGGAG
GCGATGCTGTCGAGTTCTTCGAGAACAGCAAAGAAGAGATCGAATCGAGA
GGTTATCCAAGTGATTTTGTGGTCCAACAACTCGAGTTTCCACAACATGG
TTACTTCCCTCCTTACGCACCAAACGctttggaaaatttggtcaaaacta
AAGGAGGTAATGTTCGTGATGATATGCGATTGGAAAAACTCTTTGTCATG
CCCTCCAATCAAGATTACGATGACGTCACAGTCAACAAAGCACAATTCCG
TAACCTGACAACCGGACAAGCAGAAATCGTACCGGTCAAGTCCATCTCCA
TGTCACTCGGTCCAAGCATGAAATCGTTGTCAGTTGACGGTAAAAACTTG
TTGAATCACACCATGTATGCTAGTGGAGCTTCTACTGTCTTCATGGTCAA
AGTGGATGAATCGAAAGTGGACCAATCACAGATGTTGAAATTTCGTGATA
ACATTGACATGAAGAACAACCATATTGTTCGTCTTGGTGAACGAGTCGTC
AAAGATGCTGACTCAGGAAAATCTTATCGAATCTTTGTTTTGCAAGTGAC
CGGCGGAGGACATTTCCCGGCACGACACGCTCACGCCGAAGCTGCCATCA
ACACTTTCAAAGCTTGCACATGTCAACTGTTCAAATTGGACGGCAAAGAT
GCTACAGAGGGGATTGAGTACGAAGTTGTTCAAGTCAGATCATGCGCTCG
AAGTGTCGGTTCCCAAAACGTCTTTCGCCTCAACCTTCCAGCAACCAATG
CTGCAATGCTTTATGGGATCGGTGGTATCGGCATCACAACAATGGCTCCC
AACGCCCTTCTAATGAGAGCTGCGTTGACCGAACGTGCCAAACTCGGAAA
TCCTCAACTTGAGTACAAACCAGAAGAatataagaataatttgagtCAAG
GACAATTTGCTCAGATTCCTTATTGGAATAAAGAGAATCCATTTTCAGGG
CGTAATTACGCCAGATGGGTGGATCACGTCAACCAACCAAAACAAGTGGC
GCCCATTTTATACCCAAGTGCACCAAAACTTCCACAATTCGCATATGCAA
AACAATATTCAATGGTTTCACAAATGGCTCGCTTGTTCAACAAGACCAAA
CCATATGTTCGAAAATTGATCtaaatggtagcacAACAACAAGTTCAACC
TGAAATCACCATGGAAACCATGGGCGGAACACTGACTGGCAGCCAGTCTA
GATATGATCCTTTGGTTCATCCAGACATCGAACTTTCATCCACAGACATC
CCAAAATTCACCAAAGGTGATAAAATCATTTCCAACTTATTCAAGAAGAT
CGACAAAGACGAGTTGATCACAGCTCCTTTACAAGCACAACCTGAAACGA
TGCAATTCTTCAACAAAGTCTTTGAAAACATCGTTGAAACAAACGACGTT
GGACAACTTGACGGTCAAAAATGGGAGACCTGGAACGGTGAAACGAAAAA
TGAAGTGACAATCGAACGAGATTACAAAGGATTGGAGATCAGTGATAAAT
ACATGGCACCAATGGATGTTTATGTTGGAGGTCCTGCAACTTGTTTTGGA
GCTGCTCTTCAAGCCAACTCTGGTGAAAATGCCAAGAATATCTTGTATGC
TCATGATGGATGCAGAGGAACCAGCAATTGGAAAGGAAGTGCAAGTTACC
ATCACGTTCATGATGCTATACCTGTTTATTACTGGCCCAACAACCATGGA
TTATACTCTGCTTACATCACAGCCAAACAtcatttccaaaagaaatttaa
tCTGGAAGGTTACAAAGAAGAACTGGCAACCATCCCACAATGGTGTAAGA
TCAGATGGAATCTTGGAAACACATTGTTCACCAAAGATGCTTGGAAGAAT
ATCAAATTATTCGCCAAGAATCAGAAAGAAGCTTTGGGTGATGTCGGCTT
TTTCATTGAAGGAACGCAATGGCGAAAAGACGAGGACACGACCGCATACA
CAACTATCCGACATTCGGGTATGTCCGAGAAAATCGTCGAACAACTCAAA
GGATTGGAAAAACCTGTTCTCATCACAAATGATGATCGGGCCAAATGCAC
CTATGTTCAACTCGGTTCAAAACAAGGTTTAGCCTGGATCAACTCCACTT
TAAAGAGGCTAGACCGAGTTGGAGGCGATGCTGTCGAGTTCTTCGAGAAC
AGCAAAGAAGAGATCGAATCGAGAGGTTATCCAAGTGATTTTGTGGTCCA
ACAACTCGAGTTTCCACAACATGGTTACTTCCCTCCTTACGCACCAAACG
ctttggaaaatttggtcaaaactaAAGGAGGTAATGTTCGTGATGATATG
CGATTGGAAAAACTCTTTGTCATGCCCTCCAATCAAGATTACGATGACGT
CACAGTCAACAAAGCACAATTCCGTAACCTGACAACCGGACAAGCAGAAA
TCGTACCGGTCAAGTCCATCTCCATGTCACTCGGTCCAAGCATGAAATCG
TTGTCAGTTGACGGTAAAAACTTGTTGAATCACACCATGTATGCTAGTGG
AGCTTCTACTGTCTTCATGGTCAAAGTGGATGAATCGAAAGTGGACCAAT
CACAGATGTTGAAATTTCGTGATAACATTGACATGAAGAACAACCATATT
GTTCGTCTTGGTGAACGAGTCGTCAAAGATGCTGACTCAGGAAAATCTTA
TCGAATCTTTGTTTTGCAAGTGACCGGCGGAGGACATTTCCCGGCACGAC
ACGCTCACGCCGAAGCTGCCATCAACACTTTCAAAGCTTGCACATGTCAA
CTGTTCAAATTGGACGGCAAAGATGCTACAGAGGGGATTGAGTACGAAGT
TGTTCAAGTCAGATCATGCGCTCGAAGTGTCGGTTCCCAAAACGTCTTTC
GCCTCAACCTTCCAGCAACCAATGCTGCAATGCTTTATGGGATCGGTGGT
ATCGGCATCACAACAATGGCTCCCAACGCCCTTCTAATGAGAGCTGCGTT
GACCGAACGTGCCAAACTCGGAAATCCTCAACTTGAGTACAAACCAGAAG
AatataagaataatttgagtCAAGGACAATTTGCTCAGATTCCTTATTGG
AATAAAGAGAATCCATTTTCAGGGCGTAATTACGCCAGATGGGTGGATCA
CGTCAACCAACCAAAACAAGTGGCGCCCATTTTATACCCAAGTGCACCAA
AACTTCCACAATTCGCATATGCAAAACAATATTCAATGGTTTCACAAATG
GCTCGCTTGTTCAACAAGACCAAACCATATGTTCGAAAATTGATCtaa
Gene-mRNA-Prot
This mRNA is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this mRNA:
The following exon feature(s) are a part of this mRNA:
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| sc0000114_pilon | genome | sc0000114_pilon:600266..604055 + |
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