MSTRG.13940.2.p1 (mRNA) -

Overview
NameMSTRG.13940.2.p1
Unique NameMSTRG.13940.2.p1
TypemRNA
OrganismClytia hemisphaerica_ch_hm2_pilon (Jellyfish)

Sequence
The following sequences are available for this feature:

mRNA from alignment at sc0000114_pilon:181538..183379+

Legend: five_prime_UTRexonpolypeptideCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>MSTRG.13940.2.p1 ID=MSTRG.13940.2.p1|Name=MSTRG.13940.2.p1|organism=Clytia hemisphaerica_ch_hm2_pilon|type=mRNA|length=1842bp|location=Sequence derived from alignment at sc0000114_pilon:181538..183379+ (Clytia hemisphaerica_ch_hm2_pilon)
TAAGGAAAGGAAAGTTCACTTCCTTGTTAAAAAGCAATGTCCTCTGAAAC
CAAAGAAAGTTTATTTGATGTGGGAAATGGTATAAAATTATGGTATAGAA
CCTGGGGAAACTCTACTGGCATTCCAGTATTATTTGTTCATGGTGGTCCT
GGTAATTGTGTAGCCGATTATGATGGTATAAACGAAAAGTTCTTTAACAA
AGAGcaatattttgttgttgagattGATCAAAGAGGTACAGGAAATTCTC
TGCCAAGTGTTAGAGATGGTCACAAAAATATGCCAATgtataaagatatt
tcaatcaCTCAAATGGCAGCTGACTTTGAAAAAATCAGACAAGAACTAGG
TAAGACTAGACTCTTTTTCGAATTTCCGGTAAAAAGCTAATGTATGGCTG
TACCAggtgcaccacaaaaaagttttttcctttCAAGAAAACTTTCTTGT
GTTCTATGACTTTTgacaaactgaaaaataaacttaaatcttgtgggtca
tttatcaaatttggttCTTTGAATCAAAAGATAGCAAGACATGTAATGAA
TTTATCTCAAACCTATACTTGAtgtattttcatgaaatttaacatattat
tttctccattttctgGCCACAAGtttttttGatcaaattgaaattcaaag
gtAATTTTTACagttaattatcatttttaatcaaTGGAACAAAGAAATTG
TTGTAACCTTGAAGAAGTTTTTAAGGTTCAATTTCAATATGTCGATTTTT
AATGTTCTTAAGTACTAGTAAagtttttaattcttttaaacATTTGATCT
AACAAATCAAATTTATTATTCTATCCATGAAAATCTAAGTTTatctttcc
tctttccaatACAAAGAAATTTACTCTTTCAGAGTTTAGTGAATCAAGTc
aattttgctgaattttttaATTCTAGGGATATCTCAGTGGTTGGTATTTG
GTGGTTCTTGGGGAAGTACATTGGGATTGTATTATGCAGAAAACTATCCA
TCAAAATGTCTGGGCCTTATCATCCGCGGAATCTTTTTGAACACAAAGGA
TGAGTTTGATGCTGTGTATTCGCAAAAACCTTTTGAAGCAGATGCAAAAC
GTTTGGCAGAGTTCAATACATTCTTTGAGCTAGCTTCAAATGAAGCAAAG
AACTCACAAGAGCAAACCCTTGACCCTAATGATTCAGAAAGAATGATAAG
ATTGTATGAAAAAATGATTCTAAGAGGCGATAGAGATGCAATCTGgagat
tttatgtttttgaaaataatcttgTGGAAGAAGATGAATCAAAATTATTG
TACCCTTTAAAGGTTTGTCTTCCCATTGTTTTGCAGGTGTACTGATAtca
ttttctgaaagaagaaGACAATAAGTTTATGAAATGGACTTCATTTCCAA
AGGATACCCTattattctttttctttcttttgttaggTTTCGGAAGGTGA
ATTTCCAACAGCTCTTTCAGTATCATTTTTCGAAGCTCGTTTATTTTTGA
GGGGTACTTTTGAGCATCCCTTAACTTTGATGGAAGAtgtcaagaaatta
aaagagggTACCACAGGTCCTGTCAAAACATGGGTTGTTCAAGGGACAGG
TGATGAAGTTTGCCCTGATCGATTTGCAAGGGATCTGGTAGATCAACTAA
AGAAAGAATCTATTCCTACCACATCACATTTCGTAGATGCTGGACATAAA
GCAAGTTCAGATGGTGTTTTCAAAGCCCTTCAAGATTGTATTAAAGATTT
TAATGAATATTACACAAAGTAGATTTGAATATTAAGTTTAAGGCATTGTT
TTACTTTTAAAGATTCGAGCTTTAAATTTCCCTGTCTtgaag

Coding sequence (CDS) from alignment at sc0000114_pilon:181538..183379+

>MSTRG.13940.2.p1 ID=MSTRG.13940.2.p1|Name=MSTRG.13940.2.p1|organism=Clytia hemisphaerica_ch_hm2_pilon|type=CDS|length=2277bp|location=Sequence derived from alignment at sc0000114_pilon:181538..183379+ (Clytia hemisphaerica_ch_hm2_pilon)
ATGTCCTCTGAAACCAAAGAAAGTTTATTTGATGTGGGAAATGGTATAAA
ATTATGGTATAGAACCTGGGGAAACTCTACTGGCATTCCAGTATTATTTG
TTCATGGTGGTCCTGGTAATTGTGTAGCCGATTATGATGGTATAAACGAA
AAGTTCTTTAACAAAGAGcaatattttgttgttgagattGATCAAAGAGG
TACAGGAAATTCTCTGCCAAGTGTTAGAGATGGTCACAAAAATATGCCAA
TgtataaagatatttcaatcaCTCAAATGGCAGCTGACTTTGAAAAAATC
AGACAAGAACTAGtttttttGatcaaattgaaattcaaagGGATATCTCA
GTGGTTGGTATTTGGTGGTTCTTGGGGAAGTACATTGGGATTGTATTATG
CAGAAAACTATCCATCAAAATGTCTGGGCCTTATCATCCGCGGAATCTTT
TTGAACACAAAGGATGAGTTTGATGCTGTGTATTCGCAAAAACCTTTTGA
AGCAGATGCAAAACGTTTGGCAGAGTTCAATACATTCTTTGAGCTAGCTT
CAAATGAAGCAAAGAACTCACAAGAGCAAACCCTTGACCCTAATGATTCA
GAAAGAATGATAAGATTGTATGAAAAAATGATTCTAAGAGGCGATAGAGA
TGCAATCTGgagattttatgtttttgaaaataatcttgTGGAAGAAGATG
AATCAAAATTATTGTACCCTTTAAAGGTTTGTCTTCCCATTGTTTTGCAG
GTGTACTGAATGTCCTCTGAAACCAAAGAAAGTTTATTTGATGTGGGAAA
TGGTATAAAATTATGGTATAGAACCTGGGGAAACTCTACTGGCATTCCAG
TATTATTTGTTCATGGTGGTCCTGGTAATTGTGTAGCCGATTATGATGGT
ATAAACGAAAAGTTCTTTAACAAAGAGcaatattttgttgttgagattGA
TCAAAGAGGTACAGGAAATTCTCTGCCAAGTGTTAGAGATGGTCACAAAA
ATATGCCAATgtataaagatatttcaatcaCTCAAATGGCAGCTGACTTT
GAAAAAATCAGACAAGAACTAGtttttttGatcaaattgaaattcaaagG
GATATCTCAGTGGTTGGTATTTGGTGGTTCTTGGGGAAGTACATTGGGAT
TGTATTATGCAGAAAACTATCCATCAAAATGTCTGGGCCTTATCATCCGC
GGAATCTTTTTGAACACAAAGGATGAGTTTGATGCTGTGTATTCGCAAAA
ACCTTTTGAAGCAGATGCAAAACGTTTGGCAGAGTTCAATACATTCTTTG
AGCTAGCTTCAAATGAAGCAAAGAACTCACAAGAGCAAACCCTTGACCCT
AATGATTCAGAAAGAATGATAAGATTGTATGAAAAAATGATTCTAAGAGG
CGATAGAGATGCAATCTGgagattttatgtttttgaaaataatcttgTGG
AAGAAGATGAATCAAAATTATTGTACCCTTTAAAGGTTTGTCTTCCCATT
GTTTTGCAGGTGTACTGAATGTCCTCTGAAACCAAAGAAAGTTTATTTGA
TGTGGGAAATGGTATAAAATTATGGTATAGAACCTGGGGAAACTCTACTG
GCATTCCAGTATTATTTGTTCATGGTGGTCCTGGTAATTGTGTAGCCGAT
TATGATGGTATAAACGAAAAGTTCTTTAACAAAGAGcaatattttgttgt
tgagattGATCAAAGAGGTACAGGAAATTCTCTGCCAAGTGTTAGAGATG
GTCACAAAAATATGCCAATgtataaagatatttcaatcaCTCAAATGGCA
GCTGACTTTGAAAAAATCAGACAAGAACTAGtttttttGatcaaattgaa
attcaaagGGATATCTCAGTGGTTGGTATTTGGTGGTTCTTGGGGAAGTA
CATTGGGATTGTATTATGCAGAAAACTATCCATCAAAATGTCTGGGCCTT
ATCATCCGCGGAATCTTTTTGAACACAAAGGATGAGTTTGATGCTGTGTA
TTCGCAAAAACCTTTTGAAGCAGATGCAAAACGTTTGGCAGAGTTCAATA
CATTCTTTGAGCTAGCTTCAAATGAAGCAAAGAACTCACAAGAGCAAACC
CTTGACCCTAATGATTCAGAAAGAATGATAAGATTGTATGAAAAAATGAT
TCTAAGAGGCGATAGAGATGCAATCTGgagattttatgtttttgaaaata
atcttgTGGAAGAAGATGAATCAAAATTATTGTACCCTTTAAAGGTTTGT
CTTCCCATTGTTTTGCAGGTGTACTGA
Gene-mRNA-Prot
This mRNA is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
MSTRG.13940MSTRG.13940Clytia hemisphaerica_ch_hm2_pilongene
The following polypeptide feature(s) derives from this mRNA:
Feature NameUnique NameSpeciesType
MSTRG.13940.2.p1MSTRG.13940.2.p1-proteinClytia hemisphaerica_ch_hm2_pilonpolypeptide
The following exon feature(s) are a part of this mRNA:
Feature NameUnique NameSpeciesType
MSTRG.13940.2.p1.exon1MSTRG.13940.2.p1.exon1Clytia hemisphaerica_ch_hm2_pilonexon
MSTRG.13940.2.p1.exon2MSTRG.13940.2.p1.exon2Clytia hemisphaerica_ch_hm2_pilonexon
MSTRG.13940.2.p1.exon3MSTRG.13940.2.p1.exon3Clytia hemisphaerica_ch_hm2_pilonexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0000114_pilongenomesc0000114_pilon:181538..183379 +