MSTRG.13893.3.p2 (mRNA) -

Overview
NameMSTRG.13893.3.p2
Unique NameMSTRG.13893.3.p2
TypemRNA
OrganismClytia hemisphaerica_ch_hm2_pilon (Jellyfish)

Sequence
The following sequences are available for this feature:

mRNA from alignment at sc0000113_pilon:604603..611575+

Legend: exonpolypeptideCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>MSTRG.13893.3.p2 ID=MSTRG.13893.3.p2|Name=MSTRG.13893.3.p2|organism=Clytia hemisphaerica_ch_hm2_pilon|type=mRNA|length=6973bp|location=Sequence derived from alignment at sc0000113_pilon:604603..611575+ (Clytia hemisphaerica_ch_hm2_pilon)
aaacaaagcaatgAATCGAAGTATGAATAACAAAAATCCAAAGATATTTG
TCTATCTGATATCAGGCTTTCTTTTGGGGCTGGTTATACGTCTCAAATTT
TCATCGTCATATCAAGCACTTTCGAAATGTCACGATAAAGTTATTTTGGA
TCAAAAAGAACAATCTAAATCTGGTCGAAGCATAAATATAGAAAAGCCAG
TAACAGTAAAGGCAAAACCAAATCGATTTAACAATGACTACAGGCCTTAT
TTTGTATACAGTGAGCTTGGTTTCAAAAATCTAATGTTTGTTGGTGTCAA
AATAAGTGAACAACAACTTATGACCAATGGTGTGACCATTAATAACACGT
GGTCTTCAGATGATCAGACTGTTGTTTTCTTCACACCGTACTCAAGAGAC
AGTGAATTTCATAACCGATTTGTGAAGAAATTAAACCTTAACGTCATTCA
ATTACCAGATATTGTGGACACGTCGAGTGATTTGGAATTTTCATTGCGTA
TTGTACAATATATGAAAGATCACCATTTGAATAAATATAACTGGTTTATT
TTGAGTAATGATAATGTTTATTTGAATATGGTTAATGCTGGAGATCATTT
AAAACGGTTGAATTCGACACAACCAATCATACTGGCAAATAAAATTAAAG
GAGAATGCTCTTCAAGCCATGGCGTTATAATGAGTCATACAGCTCTTTCA
AACTATTACCAAACTGATGGAGCGGGTTTTCCTTCTGGGTTGTTATCAAA
ACTGGGAAATAAGGAAACACTTTTTTGCGTGAGTTTCTATTTCTTCTAAT
AATAAAGATATTTTCTTGCCAAGGTATTTACAATCTCAAACTACGTTGCA
TGCTTTAATCGATTGTGATTATTtggaaacttttctttttttgtgagAAA
CAAATTGCGTTTTTGCCTTTACCTTTCAAGGacttttttactattaaatt
ttagaactcgattaaaattttacttttaaatttacttttgaatCCACAAA
GCTACAAAATCTAGTTTTTTGAAGGTAGatgaatttttctgctttttgca
GTAATCCTAATATTCTAAAACAACGGTTTTGACTTTTCTTTCGTTTTAGA
ATTCCGAACGATTTCTTAATATCCAAAGCAGCAATATGCAACGAGTTTTA
GGAGATGGAAACACCCTAAATGTTATCTCTATTGCTCCTCTCAAATCAAA
CACGGATATGTTGAAATTACACAAAACTATCGTTCAAGAACGTTTAAAGG
AAACTTTAAAAACTTCACGTAACTTACAAGCTTCGATCAAAGAATTTCAT
GATAGAGTGCCAAACGGTTTGTTCATTTTATTTACGTATATCTGAGTACC
AATTAATGGCGATTTCAAGTACACAAATTTCCTATTAGTAGATTCATGTA
AAAACGTCACGGaaaaaaaGTCGAgaaaagctctgattggctgagagATA
CTTTGGACATTTTGAGATGCAATTTATGTGTGCAATTTACAACCCATCAG
AGCTCTACTCGACGTTTTTGTGTGACTTTTGTATGTGAATCTGCTTCTAA
GGTGTGTGTTCGTTTTGACTTATGACGACAAACTGACGCTCTACACGACT
GACCAGACAACAGACTACTCGGGACCATCTACAAACATCCAAAACTCTCT
GGAACTGAAGTGACAGTTGACTGCTTTAAAAACTACACACTCGACTGGAA
AATCCTACTCACAAAATATGACAGGTACATAATATTTGACAATTTATTAA
ATTGAATAAGCCTAGGAATTAGGCGAAATTATTCTTAATAAATTAGGAAT
TATCGACTTAAGAATATACGGTACGATGTTATTTTGTACTCAACAGCGTG
ATTTTCATTTGGTTCTAACTATAAAGTGTATTATCCTGCATAAATTATCA
TTCCTATGAACTAAAATCGTAATAAGTATAAACCCAGTAGGACACACGGC
GTCTATAAAACGTTAGATGAGATTCTTAAACAACAGTTTTTGGCAACTCA
GATGGTAGTAACCGAAGTGCAAAGGTAGGGCATTCGGGTGCTGCGATGCG
CAAGATACCGGGATCAATCCCCTATTGGGTTATACCAAAGACCTCGCGCT
TAATACGAAATAGTATTTGATTTATCTCTCTGCTTAATGCACATTTTGAA
TAGAAGAATATCTTAAAGAGAAGAATCGAGGGTAAATGGCGAGCAATCCA
GGAAGAAAGAGTGGCGTCTATCATCCCTACCTTAGGGAAGACAGTTATAG
AGAGAGGACTCTTCGGGTCGCCTCAGACTGCGATGGTACAtttttttCCA
TACAAAACTAAATGACCTTCAAAAAAGCCTACGCCTTTAAACcaattata
aattttctttcaattcttaGATGTGTTGGAGAAGAAATTAACATGGCCAC
TAGGCTATCCGCGACCATTCCGACCATCATCAAGATTTGAAGTTATTCAA
TGGAcattatttgataaaaacaaGATGTATGCTTTCACTGATCAAGAGCC
AACCTCATCTTTCCCTGCTTCATATTATGGTGATTTTACAGAGATTCTAC
AAACAGTAAAACAAGctatcaatcaaaaatatgGAAATCGTAGATTGGAA
TTGTTAAATGGATATCACAGAGTTGATCCGAAAAGAGGTATTTTTACTGc
cttttgaatcttttttcacTATTTCTTCGTTAAAAGTTTACATTTTGTCT
CCATATTTCGAacttgaaaatagaaatttgtcTGTTCAAATTAGATATAC
CCAGTTTGAATGACAGTTTGAATTAGCAAGTCTATTGTATCTAAATTCTA
TGAAACGAAGCTTTTCTCTGATAGTACAAAATTTCTCTGACAACTTATCA
CCACAAAGTCTTCGGTATATATTATGATGTTGTAAGACAAGACAGACAGT
GCAATTTTCCAATCGTTTCTCTCGGGTAGTAGTGAGTTTTATTTCGCAAC
ACGAAATGTCTTCTGTTTCTTCTGTTTCAATGAtggttactcttaggtgc
caaataacccccccccccaatttttttttaaattcccagctaccaaaagg
aaagttccttgttttactctaaaaagcctaaatttagtctattttgaccc
tttttagggtttttaaaggtccattttccaacctccccccggtaattagg
ccccccccgtttatttaatttggaaaacttttccaacccccccccccttt
atttggcacctaagagtagtgGTTCATTTGTGTTTATCCTGACTGAATGA
GGAAGATGGTAAATCAGACTTTGTTTGACTGTCCTCAATTTTGAAGGTCT
GATCAGCGGGTTGTTCTAACGTTTATATCTCTCTTGCTTCTTGATTCCCT
GGTCAGGATTCTTGACCCTTCCAAGATCTTAGTAAGATCTTGacaagaat
tttgaccagggTACAGACACTATCGCTAAAGCTGTGAAATGACCGTTTCT
TTAGGGGCAGAATATCTGATTGAAATGAAGGACAAATCGTCAGATAAAGT
GTATCGTTATCAGTTACTTCGACCTTTCTCCAGAGTTGAATCACTTTCAA
TGCCAGCTGCAACAGAACAGAAAGGAATACACATTGTACTACCGTTACTC
AAGTAAGTAGAAAATAACTCTTTTCATTATATCAATTTGGgttttttaga
aagttttgCTCTACCCAAAGTTGAAAAGATATACAATAGAGTCTATTTAG
CTCGAACCTTTAttataactcaaatgtctccttaactcgaacaagttttc
acctcccttcagttaacaattccTTATAGATACTTGCTCCATAACTCTTA
ATTACCTTAATTCAAACAAATTTGCGAATTCGCGTTTCTCGGGTGAGTTC
GAGCTATGGAGATTCCACTGTATTGGTATCACCTGGGACTAGTAAAAGAT
CGTTAAAATATTGAACAGTCTTTGGATGATATtatgttatgttttatttt
cttccattgcttttttctatttttctaatGACGTTACAGCATATCACCTA
AACATATATTACTCAGTATGTATTGAAATAAATCATTGCTGACCTTGCTT
CCTATTTCAAATACTTAATTtctttggtatttttcttttcGAAGGGATGa
catgaaatattttgaaaagttcatGCAAATGTACAAAAGACTTTGTTTAC
AATCTGGAGAAAATGTTGTTCTTCTAACTGTCTTTGTCAATATTCGTGAT
GGGaagtttgaagaagaaaaagaaccgTTTCTAGAATTCAAAAATCTGAT
TTCAAGGTGCGAATTACTTGTGTttaggcttttcctgaaaatttgatTCT
AAAATTCTAGATCTCCCTGGAGGATTTCCTGTATACCCTTAAGAGACTCC
TTGATTTTTTCATGTACTGTGATACGTCTCATTTGGATTTTCAccgaaat
ttttttgagagtACCTGGACCTGGAAAATCTAACCTCCTCAACATCTGGA
ATAGCCTAATAAAGTTTATATTGCGGAAAGAAAGGATGACTGATAGATTT
GAAGAATTCCTTTCAAATTTcctatcaaaattaattttcacacAATTTCC
ACAGTccagaaattaaaatttcagtcaaatctttacttgtctgtacacag
acccgatatctacggctaatttcaaaaaacaatgatctCATTCTTATCAA
CACTAAACAACCCCCAATGCAAACTTCTTATATTTTCAGATACAAGCAAT
CATACATGTGGGCTCAATTACCATGGTTACAAGTTGGTGTTAAACACATT
TCTGATGTCTTGGTGATGGACATTGTGTCAATGAAACTACCTTCCAACGC
TCTTATACTCTTGCTCTCACATCATAATCATTTCACTGtcaattttttaa
acagatGTCGTGTTAATGTAGTGACTGGATTGCAGGTACAGTGGAACTTC
TTTAACTggaatctctataactcgaatgtctccttaactcgaacaagttt
tctggcCCCTTCAACCTTATAAAGCTTAAAAATTCATaactccataattc
gaacaattGCATTTCTTTAGTTTCATCACCGTAATTAGATTCACCTTCTA
AATTCAACTAGAGTGCAGAAGGAGTGTATTGAAGCATGTAATTAGGCACA
GGATATTGTCTTTAGAAGGTTCTATATCCAACGTTTCGAGATGTTTGAAA
ACAAGATAGATGTGTCATCGCCATGTATCGAAATCTTCCAAAGATTTTTC
TACGATTTTTCCTCAGAGACCAGTCAGACATATTTTTAACCATTCTGTCA
GTATCTATTGCTTGATAATCACTTAAAATGAGAGCACACCATTGATTCTA
TTaacaattttaatgttttttacttttcaggtctttttCCCCATTCCTTT
CTTGGAATACAATCCAGACATTGTTTACAATGGCAAGCAGAAACCAGCAT
TTTCAGAAGTACACACCACAACCGGGTTCTGGGGTCGAGACTCATATCAA
GTTGGCTGTTTCAATAATAATGATTATAAAGCAGCTCGTATGTGGAAAAA
TGACTTCCTTGATGAAAACTTGCCTAACAATAAAACTATTCTTGGTGTTT
TTGAAGGATCCAATCTTAATGTTTTCAGAGCTTTGGATAGTGAACTTCAT
ACTTGGTATGAGTTTGAGAATTGTGTTTCAGatgtcaaaacaaataaaac
cgAATGTCATTTTAAGAATTCACAAAGACTTGGTAATAGAGCTCAGTTAG
CTCaagttttctttgattttaataaTTCGAAAAAACCATAGACATATTAT
CAGCATTAGAAATATGTATTttaggcccggcggaagcggggagactgggg
agacttccccacttttgagcaaatgagatttttttctcaaattcctagca
aattttatctcattttgagccttcagcctccccactttaagGTCGTTCCC
CGGAtctgtattttgaatatttagcATATTTTCTTAAGTAGATATGAGTT
TTCAATTATCATTGTATTCCTCAGggaaattaatgcgtgtccaaatttca
AACATGTTATTAGGCcacttatgatgacgtcataaaacaaGAGAATTAAA
TATCTTGAGAACTACTCagtaaaactttatgaaatttttaccaATGATAT
CAAAAGGAGTATTGGGCTCtccagaaaaaagttttacatgggggttggag
gatataacaaattttagtgatttaccccccggacagggtgacttttggcc
ccccggacaggcatctgctgaccccccggacacaccaaattacccccgga
cagagcaaatttacaccccggacaaggcaaattttgatgattttttgcta
cccccggacaatatatcctgaacccccatgtaaaattttttttggaagag
cccattctatgattgtaaatattttgatgacgtcagcagaaatagCAGAA
CATCTCAAAAGTGGCAGAAATTAAATTTAAGTAAcagtaattttcatttt
cgacATCGAAATACAATTCTTTTTTATGTATAATGGGTGCGaaagaatta
ttgaaaatttagacAATATGCATTCTTATTGAAACAGATTTCACGGGTTC
TGAATAAAATGATTTGTCATTTGGAAAAATACTACTTTTTGATGCGACAG
GGTTGATCTTACGGTGCTGTTAGCATTAcattttgtttagaattttTCTC
CTCGGGATTatcaaaaattctttgttttatcTTCATTAAACTAAGATAAC
AAAGgattttggaaaattaactGTGGATATCATCTGCCGAAAGTATCTGC
TTGCATAATTCTAATCCTTTTATGCAATTTGTTTATCCCAACAGAGGTGT
TATGCTATTACAGTGTGTATCCCaaaaaaaGCGgacatatttttatataa
agtaaaatcttcatgatttatgagaaattttatgaCCCTTATGTACCtat
aggtcgtgttcagaccaaggtttaaatcAATTAGGTCTACAAGTTTCTTT
Tagattccttttgtatttaacgg

Coding sequence (CDS) from alignment at sc0000113_pilon:604603..611575+

>MSTRG.13893.3.p2 ID=MSTRG.13893.3.p2|Name=MSTRG.13893.3.p2|organism=Clytia hemisphaerica_ch_hm2_pilon|type=CDS|length=2046bp|location=Sequence derived from alignment at sc0000113_pilon:604603..611575+ (Clytia hemisphaerica_ch_hm2_pilon)
aacaaagcaatgAATCGAAGTATGAATAACAAAAATCCAAAGATATTTGT
CTATCTGATATCAGGCTTTCTTTTGGGGCTGGTTATACGTCTCAAATTTT
CATCGTCATATCAAGCACTTTCGAAATGTCACGATAAAGTTATTTTGGAT
CAAAAAGAACAATCTAAATCTGGTCGAAGCATAAATATAGAAAAGCCAGT
AACAGTAAAGGCAAAACCAAATCGATTTAACAATGACTACAGGCCTTATT
TTGTATACAGTGAGCTTGGTTTCAAAAATCTAATGTTTGTTGGTGTCAAA
ATAAGTGAACAACAACTTATGACCAATGGTGTGACCATTAATAACACGTG
GTCTTCAGATGATCAGACTGTTGTTTTCTTCACACCGTACTCAAGAGACA
GTGAATTTCATAACCGATTTGTGAAGAAATTAAACCTTAACGTCATTCAA
TTACCAGATATTGTGGACACGTCGAGTGATTTGGAATTTTCATTGCGTAT
TGTACAATATATGAAAGATCACCATTTGAATAAATATAACTGGTTTATTT
TGAGTAATGATAATGTTTATTTGAATATGGTTAATGCTGGAGATCATTTA
AAACGGTTGAATTCGACACAACCAATCATACTGGCAAATAAAATTAAAGG
AGAATGCTCTTCAAGCCATGGCGTTATAATGAGTCATACAGCTCTTTCAA
ACTATTACCAAACTGATGGAGCGGGTTTTCCTTCTGGGTTGTTATCAAAA
CTGGGAAATAAGGAAACACTTTTTTGCAATTCCGAACGATTTCTTAATAT
CCAAAGCAGCAATATGCAACGAGTTTTAGGAGATGGAAACACCCTAAATG
TTATCTCTATTGCTCCTCTCAAATCAAACACGGATATGTTGAAATTACAC
AAAACTATCGTTCAAGAACGTTTAAAGGAAACTTTAAAAACTTCACGTAA
CTTACAAGCTTCGATCAAAGAATTTCATGATAGAGTGCCAAACGGTTTGT
TCATTTTATTTACGTATATCTGAaacaaagcaatgAATCGAAGTATGAAT
AACAAAAATCCAAAGATATTTGTCTATCTGATATCAGGCTTTCTTTTGGG
GCTGGTTATACGTCTCAAATTTTCATCGTCATATCAAGCACTTTCGAAAT
GTCACGATAAAGTTATTTTGGATCAAAAAGAACAATCTAAATCTGGTCGA
AGCATAAATATAGAAAAGCCAGTAACAGTAAAGGCAAAACCAAATCGATT
TAACAATGACTACAGGCCTTATTTTGTATACAGTGAGCTTGGTTTCAAAA
ATCTAATGTTTGTTGGTGTCAAAATAAGTGAACAACAACTTATGACCAAT
GGTGTGACCATTAATAACACGTGGTCTTCAGATGATCAGACTGTTGTTTT
CTTCACACCGTACTCAAGAGACAGTGAATTTCATAACCGATTTGTGAAGA
AATTAAACCTTAACGTCATTCAATTACCAGATATTGTGGACACGTCGAGT
GATTTGGAATTTTCATTGCGTATTGTACAATATATGAAAGATCACCATTT
GAATAAATATAACTGGTTTATTTTGAGTAATGATAATGTTTATTTGAATA
TGGTTAATGCTGGAGATCATTTAAAACGGTTGAATTCGACACAACCAATC
ATACTGGCAAATAAAATTAAAGGAGAATGCTCTTCAAGCCATGGCGTTAT
AATGAGTCATACAGCTCTTTCAAACTATTACCAAACTGATGGAGCGGGTT
TTCCTTCTGGGTTGTTATCAAAACTGGGAAATAAGGAAACACTTTTTTGC
AATTCCGAACGATTTCTTAATATCCAAAGCAGCAATATGCAACGAGTTTT
AGGAGATGGAAACACCCTAAATGTTATCTCTATTGCTCCTCTCAAATCAA
ACACGGATATGTTGAAATTACACAAAACTATCGTTCAAGAACGTTTAAAG
GAAACTTTAAAAACTTCACGTAACTTACAAGCTTCGATCAAAGAATTTCA
TGATAGAGTGCCAAACGGTTTGTTCATTTTATTTACGTATATCTGA
Gene-mRNA-Prot
This mRNA is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
MSTRG.13893MSTRG.13893Clytia hemisphaerica_ch_hm2_pilongene
The following exon feature(s) are a part of this mRNA:
Feature NameUnique NameSpeciesType
MSTRG.13893.3.p2.exon1MSTRG.13893.3.p2.exon1Clytia hemisphaerica_ch_hm2_pilonexon
MSTRG.13893.3.p2.exon2MSTRG.13893.3.p2.exon2Clytia hemisphaerica_ch_hm2_pilonexon
MSTRG.13893.3.p2.exon3MSTRG.13893.3.p2.exon3Clytia hemisphaerica_ch_hm2_pilonexon
MSTRG.13893.3.p2.exon4MSTRG.13893.3.p2.exon4Clytia hemisphaerica_ch_hm2_pilonexon
MSTRG.13893.3.p2.exon5MSTRG.13893.3.p2.exon5Clytia hemisphaerica_ch_hm2_pilonexon
MSTRG.13893.3.p2.exon6MSTRG.13893.3.p2.exon6Clytia hemisphaerica_ch_hm2_pilonexon
MSTRG.13893.3.p2.exon7MSTRG.13893.3.p2.exon7Clytia hemisphaerica_ch_hm2_pilonexon
The following polypeptide feature(s) derives from this mRNA:
Feature NameUnique NameSpeciesType
MSTRG.13893.3.p2MSTRG.13893.3.p2-proteinClytia hemisphaerica_ch_hm2_pilonpolypeptide
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0000113_pilongenomesc0000113_pilon:604603..611575 +