MSTRG.13871.1.p1 (mRNA) -

Overview
NameMSTRG.13871.1.p1
Unique NameMSTRG.13871.1.p1
TypemRNA
OrganismClytia hemisphaerica_ch_hm2_pilon (Jellyfish)

Sequence
The following sequences are available for this feature:

mRNA from alignment at sc0000113_pilon:380118..382000-

Legend: exonfive_prime_UTRpolypeptideCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>MSTRG.13871.1.p1 ID=MSTRG.13871.1.p1|Name=MSTRG.13871.1.p1|organism=Clytia hemisphaerica_ch_hm2_pilon|type=mRNA|length=1883bp|location=Sequence derived from alignment at sc0000113_pilon:380118..382000- (Clytia hemisphaerica_ch_hm2_pilon)
AATTAAGTTGAAATGAATGACAAAGAGCTTGTATGAGTTTGTATACATGC
GAAGTAAAAATCGAACGGAAAAACCAAGTTTTTTAATATCATATGACTGA
GAATCTAACAATATTTAACAACATTGAGATATTACATATTACAAGGACTT
GTCAACATTGGATAATTCAGTATTGTAAAGAAGCAAAATGACCAGATTCA
AGGAGAAATTTTGTAATAAAGATCTTATCAACCTCATACCAAAATTTGTG
TTGATTGGAGCATGTTCTATCACTTTTATTGTCATTCTGGTATCAGTGAC
GTCCAACTGTTGGGCTAACAGTAAAATTCATTATGAATCAAGAGGTATAT
TTTTATCAATTGCTTTTGTTAGGGCTATTTTGAAAGTACTTCTGCAAGTA
TCAAGAGAATGAGATCTCCAGTATTACCTTTCTTTCTATGACTGTTGCTT
GTTTTAATATTAAAAAATAATCACGTAGGACCATAATTAAAGTCAAAAAT
TTAATTCTAATTTTGATTCAAAATTTTGACGTTATTTTGTTATCTTGTCA
AGGATAAAATATCTGAAATGGAAAAAAGGCTTCTTATCCCCCTCTTATCC
TCACTAGAACAAAAGATAAGAACAGCTAGAGCTAATTCAAAATGATTCTT
AACACCAATAACCAAACCATTCATTTCAACTTTTCAGGTCTGTGGAAATT
CTGTCATCACATTGACGACGATCCAGACAAAGCAGTATTGTGCCCAAGTA
TCAATAACGCCTCAGTCATACAAATATACGAAAAACGACCGCCCACAACG
CCCGAATGGATACGAGAAGGATATATCCCTGATTGGTTAATGGCTGTTCG
AGTTGTCATGATAATGGCTGCTGTGTTTGAGTTTATCGCCATAATGGCAG
CAGTTTTCACACTTTTCATCAAGAAGTTTCATGGTTATATTACCAGCATC
TTTAGTTCCATTGCGTTTGCTTTACTGCTTGTTGGAGTCTATTTGTATTC
CGATCGAACGAATTTCGCCGTTGAGGAGTATGCTTGTGGTGTTGGATGGG
GCATGGGATTTTTAGCGGTTATCTTTTCATTCTTGTCAGCTTTCATTGGA
CTTTGTACGTTTTAGAATTCCCTTGGAATGTGGCAGAGAAGGGCCATAAG
TCCCTAATTTTTTTATAATTTATCTCAGTGTAAAGTATTTTTTTACTGGT
TATCATTATGATCATGTTAAAATAAACTATTAAAGATTATTGTTACATAA
ACTTTATCTTACATATACCTTAAGGGAACTAATTTTACCGAGAACTAATT
TTCGCGGTCGAAAAAATATTCAAAAAGAATTACATTTTTAGCGTCCTACA
TTTCTTTTTATAAGCAAGTGTCTGCCCCTTGGCCAGGCTCATATATGCTT
AAGTTCTCAAAATGCTTACGAATTTTAGTGAAATTTCAGAAATTTTGTAA
AAATTTGTTCAGATTTTGGGAGCAGTGGAATCTAACTAGCCGTGGAATGT
CTATTTTTCATCAGACTGACATATATTCTCATGTTACATATATGCTTAGG
AATTCTGCAAATCTGAGCCTTATACTTGTCAGCGTTATCCTTATAAAAAA
CACGCATTTCGGACACATTTATTTCATTTTCCTGGGGATTTTTAAATTTC
TTGATAAAAAAGGGCCGAATTTGTAATTCGCAAGTTCTAATTAGTTCCCA
TATAATTTACATCCCTTTAAAGTAAACTTAAAATGTTATGATGAAAAAGA
GCATGTTAAAAATAAAGAAAATTAAGTCATTTGCCATACTGTAGCGCAAG
GAAATATTTTCCTAAACACTTTTACCCAAATTTGTCACATTGTTTTAGAG
CAACTCCGATTTTCGGGTCAGCCCTGGGGTTGC

Coding sequence (CDS) from alignment at sc0000113_pilon:380118..382000-

>MSTRG.13871.1.p1 ID=MSTRG.13871.1.p1|Name=MSTRG.13871.1.p1|organism=Clytia hemisphaerica_ch_hm2_pilon|type=CDS|length=1170bp|location=Sequence derived from alignment at sc0000113_pilon:380118..382000- (Clytia hemisphaerica_ch_hm2_pilon)
GTCTGTGGAAATTCTGTCATCACATTGACGACGATCCAGACAAAGCAGTA
TTGTGCCCAAGTATCAATAACGCCTCAGTCATACAAATATACGAAAAACG
ACCGCCCACAACGCCCGAATGGATACGAGAAGGATATATCCCTGATTGGT
TAATGGCTGTTCGAGTTGTCATGATAATGGCTGCTGTGTTTGAGTTTATC
GCCATAATGGCAGCAGTTTTCACACTTTTCATCAAGAAGTTTCATGGTTA
TATTACCAGCATCTTTAGTTCCATTGCGTTTGCTTTACTGCTTGTTGGAG
TCTATTTGTATTCCGATCGAACGAATTTCGCCGTTGAGGAGTATGCTTGT
GGTGTTGGATGGGGCATGGGATTTTTAGCGGTTATCTTTTCATTCTTGTC
AGCTTTCATTGGACTTTGTACGTTTTAGATGACCAGATTCAAGGAGAAAT
TTTGTAATAAAGATCTTATCAACCTCATACCAAAATTTGTGTTGATTGGA
GCATGTTCTATCACTTTTATTGTCATTCTGGTATCAGTGACGTCCAACTG
TTGGGCTAACAGTAAAATTCATTATGAATCAAGAGGTCTGTGGAAATTCT
GTCATCACATTGACGACGATCCAGACAAAGCAGTATTGTGCCCAAGTATC
AATAACGCCTCAGTCATACAAATATACGAAAAACGACCGCCCACAACGCC
CGAATGGATACGAGAAGGATATATCCCTGATTGGTTAATGGCTGTTCGAG
TTGTCATGATAATGGCTGCTGTGTTTGAGTTTATCGCCATAATGGCAGCA
GTTTTCACACTTTTCATCAAGAAGTTTCATGGTTATATTACCAGCATCTT
TAGTTCCATTGCGTTTGCTTTACTGCTTGTTGGAGTCTATTTGTATTCCG
ATCGAACGAATTTCGCCGTTGAGGAGTATGCTTGTGGTGTTGGATGGGGC
ATGGGATTTTTAGCGGTTATCTTTTCATTCTTGTCAGCTTTCATTGGACT
TTGTACGTTTTAGATGACCAGATTCAAGGAGAAATTTTGTAATAAAGATC
TTATCAACCTCATACCAAAATTTGTGTTGATTGGAGCATGTTCTATCACT
TTTATTGTCATTCTGGTATCAGTGACGTCCAACTGTTGGGCTAACAGTAA
AATTCATTATGAATCAAGAG
Gene-mRNA-Prot
This mRNA is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
MSTRG.13871MSTRG.13871Clytia hemisphaerica_ch_hm2_pilongene
The following exon feature(s) are a part of this mRNA:
Feature NameUnique NameSpeciesType
MSTRG.13871.1.p1.exon2MSTRG.13871.1.p1.exon2Clytia hemisphaerica_ch_hm2_pilonexon
MSTRG.13871.1.p1.exon1MSTRG.13871.1.p1.exon1Clytia hemisphaerica_ch_hm2_pilonexon
The following polypeptide feature(s) derives from this mRNA:
Feature NameUnique NameSpeciesType
MSTRG.13871.1.p1MSTRG.13871.1.p1-proteinClytia hemisphaerica_ch_hm2_pilonpolypeptide
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0000113_pilongenomesc0000113_pilon:380118..382000 -