MSTRG.13683.3.p1 (mRNA) -

Overview


Name	MSTRG.13683.3.p1
Unique Name	MSTRG.13683.3.p1
Type	mRNA
Organism	Clytia hemisphaerica_ch_hm2_pilon (Jellyfish)

Sequence

The following sequences are available for this feature:

mRNA from alignment at sc0000110_pilon:346649..349335-
coding sequence from alignment at sc0000110_pilon:346649..349335-

mRNA from alignment at sc0000110_pilon:346649..349335-

Legend: exonpolypeptideCDSthree_prime_UTR

Hold the cursor over a type above to highlight its positions in the sequence below.

>MSTRG.13683.3.p1 ID=MSTRG.13683.3.p1|Name=MSTRG.13683.3.p1|organism=Clytia hemisphaerica_ch_hm2_pilon|type=mRNA|length=2687bp|location=Sequence derived from alignment at sc0000110_pilon:346649..349335- (Clytia hemisphaerica_ch_hm2_pilon)
AGAGATTTTGGGAATTTGAGCAATCTTCCGAAAGCGTCTCCGTTGCTGGT
AAGATAATGAAATTTTCGCACTTTTGGGAAAAAGATTTGAAAGCATCAAA
ATTCGCCCTGGGTGTCGTACGTGAAGGCTATAAAATACCCTTTGAATCAA
ACCCACCACCTTTTTACGCTAAGAACAATGCGTCCAGTTTAAAGAACGAC
CATTTTGTCAAAGACAGCATCAAAAAACTTTTGGAAGACAGTTGTATTGA
AAAAGTATCGGAGCCACCCTACTGCATCAACCCCTTAACCGTAGCAGAAA
GAAATTCTAAGCTTAGGTTGGTATTAGATCTCAGACACGTCAATAAATTC
ATCAAACCAAACAAATTCAAATACGAAAATTTAAAACAAGCCTCAGAGTT
AATCGACCAGAACGATTTTTTAATCACTTTCGACCTCAAAAGCGGATACC
ATCATGTACCGATCAATCATATTTTTCGAACCTTTTTGGGATTCGCATGG
GAATTCGACGGTAAAATGCAATTTTTTGTGTTCAAAGTTTTGCCATTTGG
GTTAAATATAGCATGCTTAGTTTTTACAAAGCTCATGCGACAATTAGTAA
AGAGATGGCGTCCGATGGGAATTAAATGCGCGATGTATCTTGATGACGGT
ATAGCTGGGGATAGTTCACATTTTTCTTTGATTCGATCGAGAGATAGGAT
GCTGCAAGACATGCAATCAGCTGGTTTGACAGTAAACTTTGAAAAGTCGA
GCCTCGAACCCGAAAAAAGAAAAACATGGCTAGGTTTCATAATCGATACT
GAAAAAATGAAATTCGAAGTCCCAACAACAAAAATTCTGAAAGTCCAAAA
CTTACTTTTAGAAGCTTTAAATTGTGAATTTATTTCAGCTAGAGAAATTT
CTAGAATAGCAGGAAATCTTATTTCTATGGCACAAGCTATCGGGCCACTT
GTTTATTTATTTACAAAGCAATTGTACAAATTTGTCGAATCCAGTTTCTC
TTGGGACAAAAAACGTCTCCTAACATTTGATGTAAGACAAGAGCTCGAAT
TTTGGAAGGAAAATTTAGAAGTCACGAAGAGCTTTAGAATTAACACACAA
CCTGAAGTCACAAAAATCGTTTTTTTGGATGCAAGTGAAACCGGTTACCG
GGGGTTATGTTGTGGAAAAACTCGGTAACATCATAGCTAGAGGGAACTTT
GACCGAACCGAACGGCAAACCAGCTCGACTTACTGCGAACTTCTTGCAGT
AAAATACATTTTGCTATCATTTCCTAAAATCTTAGAAAACGAAAATATTG
AGTGGTTTACCGACAATAATAATATATGTAGAATCATAAATCGAGGTAGC
ACAAAGCAACACTTGCAAAATCTTGCAATCGAAATTTTAACATTTGTTTA
TCGTCCAACATTGAAATTTACCCTACTTGGATCCCTAGAGAGTTAAACGA
AATTGCCGATAAAATCTCAAAGACCAACGATACAGACAACTGGTCAATTG
ACAATGAAACTTTTGATTATGTACTTAAAAACTACGGACAGGTTACCATC
GACCGATTTTCAGACAGCTTAAACAAAAAATTTTCTCGGTTTAACTCCAA
AGAATATTGTCCTGGTACTTCTGCAGTTAATTCTTTTTCGTGCCACTGGG
GAAACCATGAAATTAATTGGCTTTGTCCTCCAATAGCATTAGTAGGAAAA
AACAATTAAACATTTAAGAAATTGTAAAGGTAAAGGCATACTATTTATCC
CCTTGTGGCCATCAGCATACTACTGGCCTTTATTGACATCAAACGGTTTC
GAGTTTGAACCTTTTGTAAAACATTTTTTAGTGCTTGATCCTTTCTTTGT
CAATTATTCAAACACCGATTGTATTTTTGACGGCTTTGCAAATTTTTACT
CTTTGGCGTTATTTATTGACATGTCCGCATAATATATTGAGCAAACTAAA
TGAACAAGATCTTAACAAATTCTTCCTTTATTCTATTTTATGATGGTGAC
AACTTTAACGCCCCGTTGCAAAACGAATTTACTTCACATCACTGTCTCCG
TTACAAATGTGTTTTATGTGTCAATGCCGCTGTGCAACACCTTTGACGTG
TCAATGCCCCTGTGCAACACAACTTATGCGTCAATGCCCCTGTGCAACGC
ACTTGAAGGAGCAATCGTTCTCCAGTTGATGATTGATTACTACCTTGAAT
TCAAGTTCGCAGACGTAGAGGTAACATAATTATTTACTTAATTTATTGCA
CTTTAAATTTTCCGACAGATAATTACGCTCCAAGTTTGAAAGAGAAGTTA
ATGGCAATTAAGAATAAAAGCCTCAAACGGAAAGCCGAAAGTCTAACTAC
CCTATTAGAAGCAGCTTACGCAAAATCTACTTTGAGAAAATACAAGCCAG
CATGGGAGAAATGGGTATCTTGGGCTGACCCCTTCGAAGAAATAAACAGT
TGTCCTGCGGATCCACTTTACGTCGCCATCTACTTAAACGATCTCACAAA
CTCTTTCGCAACCGAAGGCGCACTGACAGCAGCAATCTTGGGTATAAGGT
GGGGTCATTTGAATTCAGGTTTTGATTTTCCAACAGATCACCAACTTGTT
AAGTTAGCACTCGAAGGAGGTAAACGCATCATTGCAGAGAGGCGATCCCC
ATCAGACAGACACCGCCGAAAGGAGCCCTTGCCTTCT

Coding sequence (CDS) from alignment at sc0000110_pilon:346649..349335-

>MSTRG.13683.3.p1 ID=MSTRG.13683.3.p1|Name=MSTRG.13683.3.p1|organism=Clytia hemisphaerica_ch_hm2_pilon|type=CDS|length=1176bp|location=Sequence derived from alignment at sc0000110_pilon:346649..349335- (Clytia hemisphaerica_ch_hm2_pilon)
AGATTTTGGGAATTTGAGCAATCTTCCGAAAGCGTCTCCGTTGCTGGTAA
GATAATGAAATTTTCGCACTTTTGGGAAAAAGATTTGAAAGCATCAAAAT
TCGCCCTGGGTGTCGTACGTGAAGGCTATAAAATACCCTTTGAATCAAAC
CCACCACCTTTTTACGCTAAGAACAATGCGTCCAGTTTAAAGAACGACCA
TTTTGTCAAAGACAGCATCAAAAAACTTTTGGAAGACAGTTGTATTGAAA
AAGTATCGGAGCCACCCTACTGCATCAACCCCTTAACCGTAGCAGAAAGA
AATTCTAAGCTTAGGTTGGTATTAGATCTCAGACACGTCAATAAATTCAT
CAAACCAAACAAATTCAAATACGAAAATTTAAAACAAGCCTCAGAGTTAA
TCGACCAGAACGATTTTTTAATCACTTTCGACCTCAAAAGCGGATACCAT
CATGTACCGATCAATCATATTTTTCGAACCTTTTTGGGATTCGCATGGGA
ATTCGACGGTAAAATGCAATTTTTTGTGTTCAAAGTTTTGCCATTTGGGT
TAAATATAGCATGCTTAGTTTTTACAAAGCTCATGCGACAATTAGTAAAG
AGATGGCGTCCGATGGGAATTAAATGCGCGATGTATCTTGATGACGGTAT
AGCTGGGGATAGTTCACATTTTTCTTTGATTCGATCGAGAGATAGGATGC
TGCAAGACATGCAATCAGCTGGTTTGACAGTAAACTTTGAAAAGTCGAGC
CTCGAACCCGAAAAAAGAAAAACATGGCTAGGTTTCATAATCGATACTGA
AAAAATGAAATTCGAAGTCCCAACAACAAAAATTCTGAAAGTCCAAAACT
TACTTTTAGAAGCTTTAAATTGTGAATTTATTTCAGCTAGAGAAATTTCT
AGAATAGCAGGAAATCTTATTTCTATGGCACAAGCTATCGGGCCACTTGT
TTATTTATTTACAAAGCAATTGTACAAATTTGTCGAATCCAGTTTCTCTT
GGGACAAAAAACGTCTCCTAACATTTGATGTAAGACAAGAGCTCGAATTT
TGGAAGGAAAATTTAGAAGTCACGAAGAGCTTTAGAATTAACACACAACC
TGAAGTCACAAAAATCGTTTTTTTGGATGCAAGTGAAACCGGTTACCGGG
GGTTATGTTGTGGAAAAACTCGGTAA

Gene-mRNA-Prot

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type
MSTRG.13683	MSTRG.13683	Clytia hemisphaerica_ch_hm2_pilon	gene

The following exon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type
MSTRG.13683.3.p1.exon2	MSTRG.13683.3.p1.exon2	Clytia hemisphaerica_ch_hm2_pilon	exon
MSTRG.13683.3.p1.exon1	MSTRG.13683.3.p1.exon1	Clytia hemisphaerica_ch_hm2_pilon	exon

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type
MSTRG.13683.3.p1	MSTRG.13683.3.p1-protein	Clytia hemisphaerica_ch_hm2_pilon	polypeptide

Position

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
sc0000110_pilon	genome	sc0000110_pilon:346649..349335 -

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MSTRG.13683.3.p1 (mRNA) -