MSTRG.13665.1.p1 (mRNA) -

Overview
NameMSTRG.13665.1.p1
Unique NameMSTRG.13665.1.p1
TypemRNA
OrganismClytia hemisphaerica_ch_hm2_pilon (Jellyfish)

Sequence
The following sequences are available for this feature:

mRNA from alignment at sc0000110_pilon:24803..27538+

Legend: polypeptideexonCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>MSTRG.13665.1.p1 ID=MSTRG.13665.1.p1|Name=MSTRG.13665.1.p1|organism=Clytia hemisphaerica_ch_hm2_pilon|type=mRNA|length=2736bp|location=Sequence derived from alignment at sc0000110_pilon:24803..27538+ (Clytia hemisphaerica_ch_hm2_pilon)
gattgcactgtgattcctactccatcgtgggtaggacccattccgatgca
tcggagggcatatcaatctatctatctatctaaatGGAAAATTAATTGTA
ATCTGATTAAAACTatttcaatttcatattttagaTTCAATCCTAATGTG
ACATCTTCAGCAGAAAAATCTGAGACAAGAAGAAAGAATGAATCAACGTA
AGAAACTGATCTTTATTTAAATCAAGTTCTGAATCAAGATTAAAAACTTG
TCCAGCTTTCTATAAAAcaatgctttttttttaaatcatcaaaataaaat
aaagtgtTGTAACCATTGACTAGACCTGGAACTCTTGTATGGGAAATTAA
GTTACTTATTTCCAGTAAAAATGCATGACCCGTGTGGTTTTTGCACAAAC
GCCAGATAGGAAGTAAACTTTAGATTTTGGGATTGTTTGTGGTGTTAAAT
GGTCAATTCGCTTGTAAGACATTTCTCAGAGTTGTTAAATGGCTTTACAT
TTAACATGCATGTAGTTGTCTTACTTTTACATGGCAAATCCCAGCCTGAA
ATTTGGCACTCATATgaatatgaaaatgattttacaCACGTATGTAAAAA
TGAATGCACACATGTAAAATGCATTTAAGAACCTGAATTTTAAAACCCAT
GGGTTTAAAATGTAATTTCTCCACCAAAATAGAATAAAAGTAGTTAAAAG
GTAGcctaattttcagaaaacaataGTCACTTATcaaacttatttctttt
gttttatgaacAAACAGGCAATTAACTCAAGGCAAATTTCAAATGACTCA
GTATGgttcactttttaaaaacagctaTATACCTACTTTAATTATAGGAG
CAGAAGAAAATTACCTCTTTCAGAAATTAACGGAAACTCGAAATCGCAAA
GGAAAACCAAAGCTATTGCTCTTCCACTTGAAAAAGATGAGAGGAAGTTA
GCAACACGTCAACGTCAAATTGATATTGGCAAAAATACTGTTGGATACAA
ATTGTACACAGAAGATGTTAAAAGGTAAGGGATCCGTCTAATCTTAAACC
AATTTTTAAATCCGTTTCAtaaccaaaataatttaaaaaaatttggtcAT
ATATTTATTAAGGACATTCGGATATTCAAACAGTTTATTCATCAATTTCC
CCTATTGTTCATGGAATAATTGATGACGCTGTATATCAACAACTTTTCTA
ATAATACAGAATGTTTGTCTCTCGcgttgttttgatgctggattAATTAG
ATAAATATTCATTATCGTTAGCAAAATGTCAGTTCACGGTTATTTGAAAT
CTTATTTTCCAAATTAGGCTTGAACAGTTGATTTACAGTCCTATTAGAAT
AATTTCAGTGTAATGTCTTTGTTCTTTTAGAATGGATCGAACAACTGACC
ACCCTTGGACGCCTAACAAATTTACAGTGTGTAGTACACGTTCATGGCAA
GGAACAATGAGAATCTGGCGACGTAAATTACATTATTGGGATCCAACAGA
GATGAAAAATGATAAAGATACATTCTTTGATTCCACTTTAAAGTATGGAT
TTAAATTATATGATTACAAAATGTGTTCTCATTTATGATGCTATTATTCT
ATAAGTATTCATACTCCGAGTAATCCTTGCAATGTTATCCAGTAGACCTT
TGATTGGtctaaatttgttttattataaaTTAGGAATGCATTactagttt
tcaaaaaatttattcttaaaaaaaacctttagtCACACCCATTTGAATGT
TTACGAATTCTTtaaaatagatcttatcggagttttttatttttctaaaa
aagcgatgtattgtttcgggggtattacaatagaaatctctcgAGGGAAt
ttattgtaatacccccgaaacaatcccacaatgcatcgctgttttagaaa
aatcaaaaactccgataaggtctatttagtAATGcattagttttcaaaaa
tttaattctaaaaaaacaacctttaGGCACACCCATTTGAATGATTACGA
ATTCTTTGTGTCTAATTTACCTGAAACTCCTACtttttttCAGTACTATT
GAAACCCAAAAGAAATCAATCGACCACAGTATGGAACTTGACGATTGTCC
TTCATCAGAGAGTAGCCAAGCCAGTTCAAATGATGATTTATTTGATGGAC
CTCCAAAAAGTGATTCATGGTATCAATCCAATGAAGATATTTTCAAGATT
AAatatgaagatgaagaagaacaaTACCTTTATCAACAATGTTATTGAGA
TCTGCGTCTTCTGGTGGTTCTGGTTAGCTTTCAATATTAATTGTGTACAA
TATGCTTCTCTGAAAACTAAACTCATTTGAACTGAAGTTTCGACTAATAA
TGACTTgctctcaaaattttaaatttctttttatcattttatcgtgtttt
attttttgcttttgtatATAATAATTCTCACAGCGATTTTCTTCCGTAAC
CTTTACGATTTAATATTTTATCTTGAGTATGCTGTATGTTTGTTTGGATA
AACTAGCTTAAAACTGAGCCCAATTCGCTAAATTTTGTACGCTTCAAATA
TGGCCTCACTTTACGTAGGTTTCGATCGACTACTTACGCTTTTTACGGTC
AAGGTATGAGCTTTTTAAGTCggtctttgtttttctttgtattttagaAT
GTAAATAGCTGATAGTGTATATATTCATTTTTTCCAAAGAGACTTATTTG
ACTTTATCCGAAAATGTATATTGACAATAAACTGAA

Coding sequence (CDS) from alignment at sc0000110_pilon:24803..27538+

>MSTRG.13665.1.p1 ID=MSTRG.13665.1.p1|Name=MSTRG.13665.1.p1|organism=Clytia hemisphaerica_ch_hm2_pilon|type=CDS|length=1188bp|location=Sequence derived from alignment at sc0000110_pilon:24803..27538+ (Clytia hemisphaerica_ch_hm2_pilon)
gattgcactgtgattcctactccatcgtgggtaggacccattccgatgca
tcggagggcatatcaatctatctatctatctaaatGGAAAATTAATTGTA
ATCTGATTAAAACTatttcaatttcatattttagaTTCAATCCTAATGTG
ACATCTTCAGCAGAAAAATCTGAGACAAGAAGAAAGAATGAATCAACGAG
CAGAAGAAAATTACCTCTTTCAGAAATTAACGGAAACTCGAAATCGCAAA
GGAAAACCAAAGCTATTGCTCTTCCACTTGAAAAAGATGAGAGGAAGTTA
GCAACACGTCAACGTCAAATTGATATTGGCAAAAATACTGTTGGATACAA
ATTGTACACAGAAGATGTTAAAAGTGTAATGTCTTTGTTCTTTTAGgatt
gcactgtgattcctactccatcgtgggtaggacccattccgatgcatcgg
agggcatatcaatctatctatctatctaaatGGAAAATTAATTGTAATCT
GATTAAAACTatttcaatttcatattttagaTTCAATCCTAATGTGACAT
CTTCAGCAGAAAAATCTGAGACAAGAAGAAAGAATGAATCAACGAGCAGA
AGAAAATTACCTCTTTCAGAAATTAACGGAAACTCGAAATCGCAAAGGAA
AACCAAAGCTATTGCTCTTCCACTTGAAAAAGATGAGAGGAAGTTAGCAA
CACGTCAACGTCAAATTGATATTGGCAAAAATACTGTTGGATACAAATTG
TACACAGAAGATGTTAAAAGTGTAATGTCTTTGTTCTTTTAGgattgcac
tgtgattcctactccatcgtgggtaggacccattccgatgcatcggaggg
catatcaatctatctatctatctaaatGGAAAATTAATTGTAATCTGATT
AAAACTatttcaatttcatattttagaTTCAATCCTAATGTGACATCTTC
AGCAGAAAAATCTGAGACAAGAAGAAAGAATGAATCAACGAGCAGAAGAA
AATTACCTCTTTCAGAAATTAACGGAAACTCGAAATCGCAAAGGAAAACC
AAAGCTATTGCTCTTCCACTTGAAAAAGATGAGAGGAAGTTAGCAACACG
TCAACGTCAAATTGATATTGGCAAAAATACTGTTGGATACAAATTGTACA
CAGAAGATGTTAAAAGTGTAATGTCTTTGTTCTTTTAG
Gene-mRNA-Prot
This mRNA is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
MSTRG.13665MSTRG.13665Clytia hemisphaerica_ch_hm2_pilongene
The following polypeptide feature(s) derives from this mRNA:
Feature NameUnique NameSpeciesType
MSTRG.13665.1.p1MSTRG.13665.1.p1-proteinClytia hemisphaerica_ch_hm2_pilonpolypeptide
The following exon feature(s) are a part of this mRNA:
Feature NameUnique NameSpeciesType
MSTRG.13665.1.p1.exon1MSTRG.13665.1.p1.exon1Clytia hemisphaerica_ch_hm2_pilonexon
MSTRG.13665.1.p1.exon2MSTRG.13665.1.p1.exon2Clytia hemisphaerica_ch_hm2_pilonexon
MSTRG.13665.1.p1.exon3MSTRG.13665.1.p1.exon3Clytia hemisphaerica_ch_hm2_pilonexon
MSTRG.13665.1.p1.exon4MSTRG.13665.1.p1.exon4Clytia hemisphaerica_ch_hm2_pilonexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0000110_pilongenomesc0000110_pilon:24803..27538 +