MSTRG.13628.1.p1 (mRNA) -

Overview
NameMSTRG.13628.1.p1
Unique NameMSTRG.13628.1.p1
TypemRNA
OrganismClytia hemisphaerica_ch_hm2_pilon (Jellyfish)

Sequence
The following sequences are available for this feature:

mRNA from alignment at sc0000109_pilon:705895..709385+

Legend: five_prime_UTRexonpolypeptideCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>MSTRG.13628.1.p1 ID=MSTRG.13628.1.p1|Name=MSTRG.13628.1.p1|organism=Clytia hemisphaerica_ch_hm2_pilon|type=mRNA|length=3491bp|location=Sequence derived from alignment at sc0000109_pilon:705895..709385+ (Clytia hemisphaerica_ch_hm2_pilon)
TAACAACAACACTGATGTCAAATATATCAGGTCATCTATTCTGGTATAAC
GCCACGCTCTTCTCTAAAGCAAGAACTTTCTAAAAGGATACAGCGAATGC
TTTGAGTTCTTGTTGAACCTAGTGCAGTAATCAGGTTTTGCTTGAAAATA
CGCAAATGGCGGATGAATATGCTGCTGATTCAGCTCAAATATCAATAGAA
GAAAAGGTTGAGGATAATGATAATGTCAACTCCAACACACAGATAGCGGA
TAAAGAATCTTCCGATAATGTTCAAGCATCGGTTATAACAGGGAAAGAGG
ACGAGGACAGCGTTGGTGATCTTCCTTATATCGTCTTTGACACGGAAACA
ACAGGCTTAGATAGCAATAAAGATCGAATCGTACAATTATCAATGACCAA
AGTTTTCTCTACAGAGCGGAAAGAGCAACTTGACATTTTCATCAATCCTG
AGCTCGATCGTGAATATCAGCTTCAATCAAAAGCATACGAGATTCACAAT
CTTCACcctgatttcttggcaaaacAGAAACTGTTTCACGAACATGCTGA
AGaaatattgaagtttttcaaaggTGCCAAGTTAGTCTTTGGACATAACG
TCCGTTTTGATTGGAAGTTTCTAGTTGCAGCTTTTACCAGGCTCGGAAAC
AATGAAGACGAAGGAAAGCCCTGGATTGATTTACTTAAGGAGATTGACTT
CAAACTTCTTGATACTCTTAAAATGAGTAGGGCTGCTTATCCTAAACCTG
AACTATTACGTCACAGGCTTAAGGATGTAGCAGAGCATTTGAATATCAAT
ACTAAAGGATTGCATAACTCTATGGTTGATGTGGAAGTGACAAACAAAAT
CCTCATTAATTTAATGGAAAAATTAtcaatcaattttgatgatCTCTCGA
CGGATACAAAGTACTTTATTCCAATGTAGGTTTTGGTCACTAGAACTCTT
TTtatgaccatagtgaatttttcataatactGTATACAGTAATAATACAA
AACGTAAAATGTAAAAGCAGCAGCAAATtgataaaacagaaaaatgaagc
gactgcttaggcgaatgataaaaaatgttttgtttccggaatgcgggtga
aggaaaaaagttatcatgcggccggccggaaaatattttttttttgctat
ttttgataatttatggctcattgaaatagagtttaagaataacttttatg
tataaaCACAGCATAAATTATGCCCTAAATTACAACAAGTACGGACTACT
AACGAACGAAACTTGATTTATAAGCGGATAAATATCTAAGCAAATGATGG
CATAAAGCGTTTAGCTTGATTTATGGATGAAACGTATCTAGTTTATatgt
atttcaaaagaaaatgcggtaaaaagataacaaaaacttttaaaaggtaG
TTGCAAACGCGTCCAAcaagtttattaaattttagaTTGTCTTGCACGGG
CTTTGTTTCCTTTTGCGGTTTTGATCGGTCCTCGCGTAATGGTTTTCTTG
CCTTCAGCTTTACACGTCTCGCAAATCGGTAAGACGGTTTTGTAAGCCTT
TTTGGTTTCTTTGTCAACTGTCCTCGGTTTCGACCGAccaaaaatcgaaa
tcaaaataaaattcatttttgtagtacttttttattttcattgctttaca
gaatgccaaattttctaaaaatttggtagtttttccaaggttttgagaat
ttaatgttcaatttttcattttatcaataaattcgaaAACTTCGGTATag
cctggagacttaaaaaatagTCGCATTTGGCTGAAATCTCCGCACAATTG
TTCCTTGGATGAATGAACatcggggtttttttttttcaaaaactttttgg
gcCTAGGGCActagtttttttgtttcgaCCTAAGAATAATTTGAAACTGC
TGAATTTGAGTTCAGTGCGTTGCTCTTGCTCCCCATAGTGtatctttatt
aaaaaaatggaaagatGAGACTTTAAATCTAATTTCGTGATCCCGTGATC
GaattcttaaaactttttttatataatctATACAACAACGTTTTGATAAA
GAGGAGTTTGtatgattattgattgattgcaGGAGTATTTTGTGAATAAT
AGCAAACATGGCGAATCAATCTACTTCCATGAATTTTATCCAACATCAAG
CTGGGCAAAAACGACCACTAAACGATTGCCAAGAGGTTGAAACTGAAGAT
GGTTTTCCATACATTGTTTTTGATACAGAGACAACTGGATTGGATTCTCA
AAATGACAGGATTGTGCAACTTTCAATGATCAAAGTTTTCTCTACAGAGC
GGAAAGAACAACTTGACATTCTCATCAATCCTGAGCTCGATCGTGAATAT
CAGCTTCAATCAAAAGCATATGAGATTCACAATCTTCACcctgatttctt
ggcaaaacAGAAACCGTTTCACGAACATGCTGAAGAAATATTGAAGTTTT
TCGAAGGTGCCAAGTTAGTCTTTGGACATAATGTACGTTTTGATTGGAAG
TTTCTAGCTGCAGCTTTTACCAGGCTCGGAAAAAATGAAGACGAAAGAAA
GCCCTGGATTGATTTACTGAAGGAGATGGACTTCAAACTTCTTGATACTC
TTAAAATGAGTAGGGCTGCTTATCCTAAACCTGAACTAGCACGTCACAGG
CTTAAAGACGTAGCAGAGCATTTGAATATTGAGGCTACAGGATTGCACAA
CTCTATGGTTGATGTGGAAGTGACAAACAAAATCCTCATTAATTTAATGG
AAAAATTAtcaatcaattttgatgatCTCTCGACGGATACAAAATTCTTT
ATTCCAATGTAGATttcagtgaatttttcataacatacactaataataca
ataatgaccgtttttttcggaaatatTGTCCTCGATCAACGCAACGACCT
CACAAACTCGGGCgctacttgacctcgggcaatatttctcagaaTAGCCC
TCACCAATtcagaaaaatagcaaaaaaacgaaagataattgaaaactgaa
caatttttttgcttACAGTTACACCAACTTCCGAAAATGTGCTAAAtatg
agtacacgttttttttttaataaggaaccttaactttgctctgagcctgg
agttccttatttttacagagaatttcagcctcaaagttccttatcgagtt
ccttatttacatagctgctaagtttggataaccatctcttactgttcctt
aaaacttgttttcttattcacagcctgagcagttcctaaacaattcccta
ttttttggaccattttcagcctcgagttccttataaacgtgttccttata
taaaaaaaacgtgtaaaaccAAAAAGAAGTTATTAACCGAACGTTTGTTT
TAGGATCTATTGGCTGCAATAAAGTTTCACTCGTATATTTTGTTCGATTT
TGAATTGAAACTCTAGaataaatttgatgaagaatagTGAAAGAAAAAGC
AAACTTGTATTGTTAACGTTTGATTACTTAAACTGGAGGTG

Coding sequence (CDS) from alignment at sc0000109_pilon:705895..709385+

>MSTRG.13628.1.p1 ID=MSTRG.13628.1.p1|Name=MSTRG.13628.1.p1|organism=Clytia hemisphaerica_ch_hm2_pilon|type=CDS|length=1548bp|location=Sequence derived from alignment at sc0000109_pilon:705895..709385+ (Clytia hemisphaerica_ch_hm2_pilon)
ATGGCGGATGAATATGCTGCTGATTCAGCTCAAATATCAATAGAAGAAAA
GGTTGAGGATAATGATAATGTCAACTCCAACACACAGATAGCGGATAAAG
AATCTTCCGATAATGTTCAAGCATCGGTTATAACAGGGAAAGAGGACGAG
GACAGCGTTGGTGATCTTCCTTATATCGTCTTTGACACGGAAACAACAGG
CTTAGATAGCAATAAAGATCGAATCGTACAATTATCAATGACCAAAGTTT
TCTCTACAGAGCGGAAAGAGCAACTTGACATTTTCATCAATCCTGAGCTC
GATCGTGAATATCAGCTTCAATCAAAAGCATACGAGATTCACAATCTTCA
CcctgatttcttggcaaaacAGAAACTGTTTCACGAACATGCTGAAGaaa
tattgaagtttttcaaagGTGCCAAGTTAGTCTTTGGACATAATGTACGT
TTTGATTGGAAGTTTCTAGCTGCAGCTTTTACCAGGCTCGGAAAAAATGA
AGACGAAAGAAAGCCCTGGATTGATTTACTGAAGGAGATGGACTTCAAAC
TTCTTGATACTCTTAAAATGAGTAGGGCTGCTTATCCTAAACCTGAACTA
GCACGTCACAGGCTTAAAGACGTAGCAGAGCATTTGAATATTGAGGCTAC
AGGATTGCACAACTCTATGGTTGATGTGGAAGTGACAAACAAAATCCTCA
TTAATTTAATGGAAAAATTAtcaatcaattttgatgatCTCTCGACGGAT
ACAAAATTCTTTATTCCAATGTAGATGGCGGATGAATATGCTGCTGATTC
AGCTCAAATATCAATAGAAGAAAAGGTTGAGGATAATGATAATGTCAACT
CCAACACACAGATAGCGGATAAAGAATCTTCCGATAATGTTCAAGCATCG
GTTATAACAGGGAAAGAGGACGAGGACAGCGTTGGTGATCTTCCTTATAT
CGTCTTTGACACGGAAACAACAGGCTTAGATAGCAATAAAGATCGAATCG
TACAATTATCAATGACCAAAGTTTTCTCTACAGAGCGGAAAGAGCAACTT
GACATTTTCATCAATCCTGAGCTCGATCGTGAATATCAGCTTCAATCAAA
AGCATACGAGATTCACAATCTTCACcctgatttcttggcaaaacAGAAAC
TGTTTCACGAACATGCTGAAGaaatattgaagtttttcaaagGTGCCAAG
TTAGTCTTTGGACATAATGTACGTTTTGATTGGAAGTTTCTAGCTGCAGC
TTTTACCAGGCTCGGAAAAAATGAAGACGAAAGAAAGCCCTGGATTGATT
TACTGAAGGAGATGGACTTCAAACTTCTTGATACTCTTAAAATGAGTAGG
GCTGCTTATCCTAAACCTGAACTAGCACGTCACAGGCTTAAAGACGTAGC
AGAGCATTTGAATATTGAGGCTACAGGATTGCACAACTCTATGGTTGATG
TGGAAGTGACAAACAAAATCCTCATTAATTTAATGGAAAAATTAtcaatc
aattttgatgatCTCTCGACGGATACAAAATTCTTTATTCCAATGTAG
Gene-mRNA-Prot
This mRNA is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
MSTRG.13628MSTRG.13628Clytia hemisphaerica_ch_hm2_pilongene
The following exon feature(s) are a part of this mRNA:
Feature NameUnique NameSpeciesType
MSTRG.13628.1.p1.exon1MSTRG.13628.1.p1.exon1Clytia hemisphaerica_ch_hm2_pilonexon
MSTRG.13628.1.p1.exon2MSTRG.13628.1.p1.exon2Clytia hemisphaerica_ch_hm2_pilonexon
The following polypeptide feature(s) derives from this mRNA:
Feature NameUnique NameSpeciesType
MSTRG.13628.1.p1MSTRG.13628.1.p1-proteinClytia hemisphaerica_ch_hm2_pilonpolypeptide
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0000109_pilongenomesc0000109_pilon:705895..709385 +