MSTRG.13578.44.p1 (mRNA) -

Overview
NameMSTRG.13578.44.p1
Unique NameMSTRG.13578.44.p1
TypemRNA
OrganismClytia hemisphaerica_ch_hm2_pilon (Jellyfish)

Sequence
The following sequences are available for this feature:

mRNA from alignment at sc0000108_pilon:1067184..1071840+

Legend: polypeptideexonCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>MSTRG.13578.44.p1 ID=MSTRG.13578.44.p1|Name=MSTRG.13578.44.p1|organism=Clytia hemisphaerica_ch_hm2_pilon|type=mRNA|length=4657bp|location=Sequence derived from alignment at sc0000108_pilon:1067184..1071840+ (Clytia hemisphaerica_ch_hm2_pilon)
ATCGAACAACATAATCAATGGATCAAAACTTATTTGAAACAATTATCTTC
CGTAAAAGCTGACAAAACTGACGTCGAAGGTGAGTTGCATTGGTTTTAAT
GTCGTCGAAAGCACATTTACTTTTTTACCTCTGTTGAATTTATGACATCC
TAAGAGCTGAATCTTGTTAACTTTTAACCTCTTGACACTGAATTCTGGTG
TCATTGAATATcagtttttgttttactttagaTCTAGCCAAGTCAATGAA
TATGAAAGCTGATAAAGATGAAATGGATggtatgttttgtttctttacTT
GTTTTATATTTTGGAGGAAATTGTAACCTCAAAAGCATATCTGATAATTA
ATATCTAATAAAAAGTTGGAGGCTACCCGGGTATCTACCTTAAAAAGCCT
CTCTGAAGATTGTCTAATAAAAAGTAGGAGGCATCGCCAAGTTGACGTTC
TAAATAAAACTGATCCTTTTGAAAAATATTCATTTCTTCTTGTTATATAT
GTTACAGTTTTTAGACATCCTCTGTATTATAAGAAGCTTTTTGTAATATA
TTTTCACTATCTTTCTGTCTGAATAGGCATTTACCGATAAAAATCACTAT
TTGTTTTACTGCAGGTTTAGCCAAGTCAATGGATAGTAGACTGAATACGA
AGGCTGATAAAGATGAAATGGATggtatgttttatttatttacttatttt
atAGTTTGGAGTAAATAGTATCCACTTTAAAAGCCTATCCGATGATTGTC
TaaaaaaaTTAGGAGACATCGCCAAGTTGACGTTCTAAATGAAATCGctc
cttataaaaaatattgaatttttctgtttgaataGACATTTCCCGATAAA
TATCACTATCTTATATTTACTATTTACTTTAGGTTTAGCCAAGTCAATGA
ATACGAAAGCTGATAAAGATGAAATTCatggtattttttgtttgtttaat
tctttttggacctacctccgggtgccccggtggaggttctataaattaac
ccatgtccgttcgtccgttcgtccgttcgttcgtccgtctgttcgtccgt
ctgttaccagcttttctcaggattggctcattagttttttctggttGTTT
GCagaatgatgcaaaatggcaatgcccagaacgtgacggagcccgatttt
tgagaaaaaatttatttgggcaaatttgggccaaaaactacctaaaaata
gggttttttgaactttgtgcaaaatcctgttattacttttttctgatttt
ttgtacaaagatggagggcaagattctctaaagaatggctgaagtggttt
ttcccggaaaattcttattcgcctgaaaaaacggattttcgtattttggg
ggaaattccctttaaccaaataagaaaatatagcttttaagaatgttgac
tcattatttttttctgattttttgcacaatgatgcaaaatggcaatgcct
aaaatgagTTGGAGCCCGgttttcgaataaaaatatatttgggcaaattt
gggccaaaaactgcctaaaaatagggtttttggactttgtgcaaaatcct
gtttttacttttttctgattttttgtacaaagatggagggcaagattctc
taaagaatggctgaagtggtttttcccgggaaattcttattcgccttaaa
agacggattttcgtattttggggaaattccctttaaccaaataagaaaat
acagcttttctcaatgttgactcataatctttttctgatttttttgcaca
atgatgcaaaatggcaatgcccaaaatgtgacggagccagatttaaaaaa
aaaataaattattttgggcaaatttgggccaaaaacagctgaaaaggttt
ttttgggcctaagtgattttcgtatttggggaaattcctttttaccattt
tacaagCGAAATTGACGTTGAAGGCTGACATGTGCCAAATTGATGGTAAA
GTTATACCAGATAAATTTGTTGTGTTTGTCGAATGTTTTTTCCTCCTCTT
TTGAGGTGGTCTGCTAGcaacttttttcatcaaaataaaactttagCGTT
ATTCAGATTTCAAATGCTTCTAGTCGATGAAAAATGTGTGTTCCGAGACC
TTTACAAATTTCCTCTGTTGTCTACACgaagtttatttttattcttttaa
cgGAATATTGCTGAATAAGAAGGCCTTTTctgataaatataatttttgga
cctaccccggtggggtgtaggtcctataaattaacctgttttcgttcgtt
cgttcgtccgtccgttcgtccgttcgtctgttaccaacttttctcaggat
tgagtcataggaattttttgatttttggtaaaaaaggTGCGAAAtggtga
tggccaaaatgtgacggagcccgattttcaaaaaaaagttttggggcaaa
tttggaccATAAAACGGCTAAAgaacggtttttttggactttgtgaaaaa
ttggatcattaattttttcggattttttgcatgaaagtagggtaccatca
taggtaaaagatggctcaagcagatttttgcaaacaaattttgttggctc
aaaaaacgcatgtgtatctataagaatcactattaataagcatacatcaa
tgttcgtagtcaaattactcaattttttatgagatagatgtttttttgct
catgagggcttacttttgaagaatgaaattttggctgcttgacgtgtttt
tatagaaaaactggccaaattcgatatctttttataagcacattatcaat
aattacttaggtattagcttttcaagagattggctctttcattcttaatg
attttttgcacaaagatgcataactataaaccctcgaatgtgacggagcc
cgattttcgaaaaaagtgtttttgggcaaatttgagccaaaaaaaggcta
aaaaaacgggtttgattttttgcatgaaagtaggtaaaagatggttcatt
tttgtgaaaaagtgaattttcagctcaaaaaacgcatctttatctataag
aatcactattaataagcatacatcaatgttcgtagtcaaattactcaatt
ttttatgagatagatgtttttttgctcatgagggcttacttttgaagaat
gaaattttggctgcttgacgtgtttttatagaaaaactggccaaattcga
tatctttttataagcacattatcaataattacttaggtattagcttttca
agaaattggctctttcattcttaatgattttttgcacaaagatgcataac
tataaaccctcgaatgtgacggagcccgattttcgaaaaaagtgtttttg
ggcaaatttgagccaaaaaaaggctaaaaaaacgggtttgattttttgca
tgaaagtaggtaaaagatggttcatttttgtgaaaaagtgaattttcagc
tcaaaaaacgcatctttatctataagaatctttattaataagcatacatc
aatgttattagccaaataactttttttgctcacgaagtcttgaacatgaa
agaatatttcaagagcatataagaaacaaacgattAATTTTAATAGATAG
TCACTATTTCTTCTGAATAATTgcttaatggtcacgctcacgtagatatc
aattatatatgtgttaaatgcataaccaggtaggtccataaaagtatcac
ttgttttttacAGAATTAAGCAACAAAGTTGATCAGCTATCAATGGAATC
AAAATCTCTAAAGGGTAAAGCTTTAGCTATGATTGCTATTTTCTCTATCC
ATGCTTAACCCTAATCGTACTAAggggggggTTGCTTCTGTTTGGAGGTC
AGATTAATGGTAATAGCTATATATAATAGATTTTAGACTCAgccaacttt
tttctaaagcctttgttagattGCATTAgctatttataaaaacaaaggaa
attttcagcagaaagattttttgtcaaaagttgccttaTATGACAAGGTT
CTTGTATGCCAAATTTCATTCCAAAAGAACCACTAAATCAAAAGTTAATG
GGTGGTACAAGAAAacccccctagttttgaactgCCCCTAAATTTATTCA
AAGAAACTTTATTTGTTATTTGTCACCTTTTTTGTATTCATTCTAGACAC
AACAAAGACACATTGGAATTTGCCAGACCCTGTTTCCATCTTCTTTGGAC
gagaaaatttgattaaatcCATTCACTTGAAACTTCAACAAAATCAAGCA
ATTGCTTTGAGTGAAATGGGAGGTGTGGGGAAAACACAAACTGCTGCAAA
GTTCGTTCAAATACACAAGGATGAATATCAGAAGATATTTTGGATTTCTG
CTGTCAGCCTCAAGAAATCTTTGAACGAGATTTTGTGTGCATTTGGCTGT
AAACAACTAATACCTGATGAACCTTCGATGGAAACTCTGACTTTCATTTT
CCTCTCTAAGATTTGTGAAGGCTCCAAAAAATCGCTGGTTTTATTGGATG
ACGTCACTGAGGTCACAAAAGACGTCACTTCTTTCATTCGaaatgtgaaa
gaaaaaatcaacttaTTGTTGACATCCCAATTGAAAGATTGGGAAGATTA
TGGTTTGTTTCAAATTGCTGTTCCATGTTTCCATGAACAAGAATCCATTG
GCTTCTTACAGAATGAACTTTCTTCAGCCAACCAACATGAAATCTCCATT
TTAGCGA

Coding sequence (CDS) from alignment at sc0000108_pilon:1067184..1071840+

>MSTRG.13578.44.p1 ID=MSTRG.13578.44.p1|Name=MSTRG.13578.44.p1|organism=Clytia hemisphaerica_ch_hm2_pilon|type=CDS|length=3930bp|location=Sequence derived from alignment at sc0000108_pilon:1067184..1071840+ (Clytia hemisphaerica_ch_hm2_pilon)
ATCGAACAACATAATCAATGGATCAAAACTTATTTGAAACAATTATCTTC
CGTAAAAGCTGACAAAACTGACGTCGAAGaTCTAGCCAAGTCAATGAATA
TGAAAGCTGATAAAGATGAAATGGATgGTTTAGCCAAGTCAATGAATACG
AAAGCTGATAAAGATGAAATTCatgAATTAAGCAACAAAGTTGATCAGCT
ATCAATGGAATCAAAATCTCTAAAGGACACAACAAAGACACATTGGAATT
TGCCAGACCCTGTTTCCATCTTCTTTGGACgagaaaatttgattaaatcC
ATTCACTTGAAACTTCAACAAAATCAAGCAATTGCTTTGAGTGAAATGGG
AGGTGTGGGGAAAACACAAACTGCTGCAAAGTTCGTTCAAATACACAAGG
ATGAATATCAGAAGATATTTTGGATTTCTGCTGTCAGCCTCAAGAAATCT
TTGAACGAGATTTTGTGTGCATTTGGCTGTAAACAACTAATACCTGATGA
ACCTTCGATGGAAACTCTGACTTTCATTTTCCTCTCTAAGATTTGTGAAG
GCTCCAAAAAATCGCTGGTTTTATTGGATGACGTCACTGAGGTCACAAAA
GACGTCACTTCTTTCATTCGaaatgtgaaagaaaaaatcaacttaTTGTT
GACATCCCAATTGAAAGATTGGGAAGATTATGGTTTGTTTCAAATTGCTG
TTCCATGTTTCCATGAACAAGAATCCATTGGCTTCTTACAGAATGAACTT
TCTTCAGCCAACCAACATGAAATCTCCATTTTAGCGATCGAACAACATAA
TCAATGGATCAAAACTTATTTGAAACAATTATCTTCCGTAAAAGCTGACA
AAACTGACGTCGAAGaTCTAGCCAAGTCAATGAATATGAAAGCTGATAAA
GATGAAATGGATgGTTTAGCCAAGTCAATGAATACGAAAGCTGATAAAGA
TGAAATTCatgAATTAAGCAACAAAGTTGATCAGCTATCAATGGAATCAA
AATCTCTAAAGGACACAACAAAGACACATTGGAATTTGCCAGACCCTGTT
TCCATCTTCTTTGGACgagaaaatttgattaaatcCATTCACTTGAAACT
TCAACAAAATCAAGCAATTGCTTTGAGTGAAATGGGAGGTGTGGGGAAAA
CACAAACTGCTGCAAAGTTCGTTCAAATACACAAGGATGAATATCAGAAG
ATATTTTGGATTTCTGCTGTCAGCCTCAAGAAATCTTTGAACGAGATTTT
GTGTGCATTTGGCTGTAAACAACTAATACCTGATGAACCTTCGATGGAAA
CTCTGACTTTCATTTTCCTCTCTAAGATTTGTGAAGGCTCCAAAAAATCG
CTGGTTTTATTGGATGACGTCACTGAGGTCACAAAAGACGTCACTTCTTT
CATTCGaaatgtgaaagaaaaaatcaacttaTTGTTGACATCCCAATTGA
AAGATTGGGAAGATTATGGTTTGTTTCAAATTGCTGTTCCATGTTTCCAT
GAACAAGAATCCATTGGCTTCTTACAGAATGAACTTTCTTCAGCCAACCA
ACATGAAATCTCCATTTTAGCGATCGAACAACATAATCAATGGATCAAAA
CTTATTTGAAACAATTATCTTCCGTAAAAGCTGACAAAACTGACGTCGAA
GaTCTAGCCAAGTCAATGAATATGAAAGCTGATAAAGATGAAATGGATgG
TTTAGCCAAGTCAATGAATACGAAAGCTGATAAAGATGAAATTCatgAAT
TAAGCAACAAAGTTGATCAGCTATCAATGGAATCAAAATCTCTAAAGGAC
ACAACAAAGACACATTGGAATTTGCCAGACCCTGTTTCCATCTTCTTTGG
ACgagaaaatttgattaaatcCATTCACTTGAAACTTCAACAAAATCAAG
CAATTGCTTTGAGTGAAATGGGAGGTGTGGGGAAAACACAAACTGCTGCA
AAGTTCGTTCAAATACACAAGGATGAATATCAGAAGATATTTTGGATTTC
TGCTGTCAGCCTCAAGAAATCTTTGAACGAGATTTTGTGTGCATTTGGCT
GTAAACAACTAATACCTGATGAACCTTCGATGGAAACTCTGACTTTCATT
TTCCTCTCTAAGATTTGTGAAGGCTCCAAAAAATCGCTGGTTTTATTGGA
TGACGTCACTGAGGTCACAAAAGACGTCACTTCTTTCATTCGaaatgtga
aagaaaaaatcaacttaTTGTTGACATCCCAATTGAAAGATTGGGAAGAT
TATGGTTTGTTTCAAATTGCTGTTCCATGTTTCCATGAACAAGAATCCAT
TGGCTTCTTACAGAATGAACTTTCTTCAGCCAACCAACATGAAATCTCCA
TTTTAGCGATCGAACAACATAATCAATGGATCAAAACTTATTTGAAACAA
TTATCTTCCGTAAAAGCTGACAAAACTGACGTCGAAGaTCTAGCCAAGTC
AATGAATATGAAAGCTGATAAAGATGAAATGGATgGTTTAGCCAAGTCAA
TGAATACGAAAGCTGATAAAGATGAAATTCatgAATTAAGCAACAAAGTT
GATCAGCTATCAATGGAATCAAAATCTCTAAAGGACACAACAAAGACACA
TTGGAATTTGCCAGACCCTGTTTCCATCTTCTTTGGACgagaaaatttga
ttaaatcCATTCACTTGAAACTTCAACAAAATCAAGCAATTGCTTTGAGT
GAAATGGGAGGTGTGGGGAAAACACAAACTGCTGCAAAGTTCGTTCAAAT
ACACAAGGATGAATATCAGAAGATATTTTGGATTTCTGCTGTCAGCCTCA
AGAAATCTTTGAACGAGATTTTGTGTGCATTTGGCTGTAAACAACTAATA
CCTGATGAACCTTCGATGGAAACTCTGACTTTCATTTTCCTCTCTAAGAT
TTGTGAAGGCTCCAAAAAATCGCTGGTTTTATTGGATGACGTCACTGAGG
TCACAAAAGACGTCACTTCTTTCATTCGaaatgtgaaagaaaaaatcaac
ttaTTGTTGACATCCCAATTGAAAGATTGGGAAGATTATGGTTTGTTTCA
AATTGCTGTTCCATGTTTCCATGAACAAGAATCCATTGGCTTCTTACAGA
ATGAACTTTCTTCAGCCAACCAACATGAAATCTCCATTTTAGCGATCGAA
CAACATAATCAATGGATCAAAACTTATTTGAAACAATTATCTTCCGTAAA
AGCTGACAAAACTGACGTCGAAGaTCTAGCCAAGTCAATGAATATGAAAG
CTGATAAAGATGAAATGGATgGTTTAGCCAAGTCAATGAATACGAAAGCT
GATAAAGATGAAATTCatgAATTAAGCAACAAAGTTGATCAGCTATCAAT
GGAATCAAAATCTCTAAAGGACACAACAAAGACACATTGGAATTTGCCAG
ACCCTGTTTCCATCTTCTTTGGACgagaaaatttgattaaatcCATTCAC
TTGAAACTTCAACAAAATCAAGCAATTGCTTTGAGTGAAATGGGAGGTGT
GGGGAAAACACAAACTGCTGCAAAGTTCGTTCAAATACACAAGGATGAAT
ATCAGAAGATATTTTGGATTTCTGCTGTCAGCCTCAAGAAATCTTTGAAC
GAGATTTTGTGTGCATTTGGCTGTAAACAACTAATACCTGATGAACCTTC
GATGGAAACTCTGACTTTCATTTTCCTCTCTAAGATTTGTGAAGGCTCCA
AAAAATCGCTGGTTTTATTGGATGACGTCACTGAGGTCACAAAAGACGTC
ACTTCTTTCATTCGaaatgtgaaagaaaaaatcaacttaTTGTTGACATC
CCAATTGAAAGATTGGGAAGATTATGGTTTGTTTCAAATTGCTGTTCCAT
GTTTCCATGAACAAGAATCCATTGGCTTCTTACAGAATGAACTTTCTTCA
GCCAACCAACATGAAATCTCCATTTTAGCG
Gene-mRNA-Prot
This mRNA is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
MSTRG.13578MSTRG.13578Clytia hemisphaerica_ch_hm2_pilongene
The following polypeptide feature(s) derives from this mRNA:
Feature NameUnique NameSpeciesType
MSTRG.13578.44.p1MSTRG.13578.44.p1-proteinClytia hemisphaerica_ch_hm2_pilonpolypeptide
The following exon feature(s) are a part of this mRNA:
Feature NameUnique NameSpeciesType
MSTRG.13578.44.p1.exon1MSTRG.13578.44.p1.exon1Clytia hemisphaerica_ch_hm2_pilonexon
MSTRG.13578.44.p1.exon2MSTRG.13578.44.p1.exon2Clytia hemisphaerica_ch_hm2_pilonexon
MSTRG.13578.44.p1.exon3MSTRG.13578.44.p1.exon3Clytia hemisphaerica_ch_hm2_pilonexon
MSTRG.13578.44.p1.exon4MSTRG.13578.44.p1.exon4Clytia hemisphaerica_ch_hm2_pilonexon
MSTRG.13578.44.p1.exon5MSTRG.13578.44.p1.exon5Clytia hemisphaerica_ch_hm2_pilonexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0000108_pilongenomesc0000108_pilon:1067184..1071840 +