MSTRG.13392.6.p1 (mRNA) -

Overview
NameMSTRG.13392.6.p1
Unique NameMSTRG.13392.6.p1
TypemRNA
OrganismClytia hemisphaerica_ch_hm2_pilon (Jellyfish)

Sequence
The following sequences are available for this feature:

mRNA from alignment at sc0000106_pilon:180607..182158-

Legend: exonfive_prime_UTRpolypeptideCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>MSTRG.13392.6.p1 ID=MSTRG.13392.6.p1|Name=MSTRG.13392.6.p1|organism=Clytia hemisphaerica_ch_hm2_pilon|type=mRNA|length=1552bp|location=Sequence derived from alignment at sc0000106_pilon:180607..182158- (Clytia hemisphaerica_ch_hm2_pilon)
CTTGTGACTATCAGCCTCTTTCCAATCCTTTATATAAAGCCATAATGTGT
ACGAATCTTCAAAACTACTTTACTTGTAAACCGCGAGGGAGACAATTTAA
AACGTGCATCATTCAACGAAAACGGCAAATAAGTTTTCAAGAGAAACTGT
TGTTAGAAGCTGAGCTGTTTAAACCAAGGTGAGCTATGCCTCGAAGAAGG
ACTGCTGTCTTTCCCGTAAACGGTCAAGGGACTCTAGTCTATACCGTTCG
TAAGAAGAGTCAATTCACCATCTACATAACACCTGACAAACAAAAGGTAC
CAAAAAGCTTAGATTTCGATAGTGAATTTTCAGAGTATGAAGAGGAGCAA
AGTTTTGATACGGAGAACTACATCTCGTTGACTGTTGGTGAGAATTTTGC
ACGTTTCAAACTGAAGATGCATAAAGATGGTGAAGAGAGAGTGTTGAAAG
AAGAATATGGGAAGAATATTGGAATTGAACCCAAAGAACTGGTAAGCTGT
ACTAATCACATCGTCTTATCTTTCGTCTAGACTTTCTCAGTCTGGTTACG
TTACGTAGTTGTACTTCTATTGTTTTTACAGCTATATATCCTGTCCTATA
CGTAGCGTTCTTAAAGCTCGTGATTTTTCTTTAACGTTGGAATTTGTTTT
TGGTTTTAGGTCAGTTATTGGTTCAGTTATGACCGCGATGCACTGACCTT
GAAATACGGCAAAGGGCACGTTATGACTCAAACAACACTATTAGAGTTCC
CTTTCTTGGAAGGCAAATCGAAAGGCGAAGAAGAGCACATTCGAAAGAAG
TACAATATTTTCTTCAATGCAGGTTAGACTTTGAAGTCGCTAATATTCTC
AATCGACTTTTGTTTTTTTTCCCTTGGTTATCAACTTCAACTAAGTTTGG
GTATAAATCTGTCTGTCTGTCTGTCTGTCTGTCTGTCTGTCTGTCTGTCT
GTCTGTCTGTCTGTCTGTCTGTCTTACAATATTGTCACCGGATTTGTCGT
TTTATTGGATTTCTCTCATATAATGTGTATGTCGGATGGAAATGGTTATT
TAGGTGTGTGACATTGGGTTGATGGATGTTTACTAATTGGCAGTTTTTAC
ACTAGGCTTGGATAGTGTTAGTTTTTTCTTTTGGAAAGGTGGGTTTTGGC
TTTTATCAACAGTTCTGTATTGTTTTCTTCGTGTCTCTCTGTCTGTCTGT
CCGTCCGAAGATTTATGGGTTGACCAATTTTCTTACCATTTGAGGCTAGG
TTCGAATTATTAATTTTATATTTATTTTTCTAGAAGAGAAAAAATACGTG
GTTGCCGAATCGGAGAAAATGGTGGAGGACGTGACAGGAGGACTGGTCAA
AATCGAACAGACGTTACAATTCTATCCCAACCCTCTCGTGACTAATTTCT
CACCTATCGTTAAAGATAGCTCGAAAGTCACTTTGTTCGATCTTGATCGA
GATCAATTCATGTTTTCAAGTAGCCTACCACCTGCCTGTAAAGAACTCTA
CGATAATATCAAAGGTACGTCTAGTTAATTTCATAACAGATCATCTATTC
TG

Coding sequence (CDS) from alignment at sc0000106_pilon:180607..182158-

>MSTRG.13392.6.p1 ID=MSTRG.13392.6.p1|Name=MSTRG.13392.6.p1|organism=Clytia hemisphaerica_ch_hm2_pilon|type=CDS|length=2133bp|location=Sequence derived from alignment at sc0000106_pilon:180607..182158- (Clytia hemisphaerica_ch_hm2_pilon)
AGAAAAAATACGTGGTTGCCGAATCGGAGAAAATGGTGGAGGACGTGACA
GGAGGACTGGTCAAAATCGAACAGACGTTACAATTCTATCCCAACCCTCT
CGTGACTAATTTCTCACCTATCGTTAAAGATAGCTCGAAAGTCACTTTGT
TCGATCTTGATCGAGATCAATTCATGTTTTCAAGTAGCCTACCACCTGCC
TGTAAAGAACTCTACGATAATATCAAAGGTACGTCTAGTTAAGTCAGTTA
TTGGTTCAGTTATGACCGCGATGCACTGACCTTGAAATACGGCAAAGGGC
ACGTTATGACTCAAACAACACTATTAGAGTTCCCTTTCTTGGAAGGCAAA
TCGAAAGGCGAAGAAGAGCACATTCGAAAGAAGTACAATATTTTCTTCAA
TGCAGATGCCTCGAAGAAGGACTGCTGTCTTTCCCGTAAACGGTCAAGGG
ACTCTAGTCTATACCGTTCGTAAGAAGAGTCAATTCACCATCTACATAAC
ACCTGACAAACAAAAGGTACCAAAAAGCTTAGATTTCGATAGTGAATTTT
CAGAGTATGAAGAGGAGCAAAGTTTTGATACGGAGAACTACATCTCGTTG
ACTGTTGGTGAGAATTTTGCACGTTTCAAACTGAAGATGCATAAAGATGG
TGAAGAGAGAGTGTTGAAAGAAGAATATGGGAAGAATATTGGAATTGAAC
CCAAAGAACTGAGAAAAAATACGTGGTTGCCGAATCGGAGAAAATGGTGG
AGGACGTGACAGGAGGACTGGTCAAAATCGAACAGACGTTACAATTCTAT
CCCAACCCTCTCGTGACTAATTTCTCACCTATCGTTAAAGATAGCTCGAA
AGTCACTTTGTTCGATCTTGATCGAGATCAATTCATGTTTTCAAGTAGCC
TACCACCTGCCTGTAAAGAACTCTACGATAATATCAAAGGTACGTCTAGT
TAAGTCAGTTATTGGTTCAGTTATGACCGCGATGCACTGACCTTGAAATA
CGGCAAAGGGCACGTTATGACTCAAACAACACTATTAGAGTTCCCTTTCT
TGGAAGGCAAATCGAAAGGCGAAGAAGAGCACATTCGAAAGAAGTACAAT
ATTTTCTTCAATGCAGATGCCTCGAAGAAGGACTGCTGTCTTTCCCGTAA
ACGGTCAAGGGACTCTAGTCTATACCGTTCGTAAGAAGAGTCAATTCACC
ATCTACATAACACCTGACAAACAAAAGGTACCAAAAAGCTTAGATTTCGA
TAGTGAATTTTCAGAGTATGAAGAGGAGCAAAGTTTTGATACGGAGAACT
ACATCTCGTTGACTGTTGGTGAGAATTTTGCACGTTTCAAACTGAAGATG
CATAAAGATGGTGAAGAGAGAGTGTTGAAAGAAGAATATGGGAAGAATAT
TGGAATTGAACCCAAAGAACTGAGAAAAAATACGTGGTTGCCGAATCGGA
GAAAATGGTGGAGGACGTGACAGGAGGACTGGTCAAAATCGAACAGACGT
TACAATTCTATCCCAACCCTCTCGTGACTAATTTCTCACCTATCGTTAAA
GATAGCTCGAAAGTCACTTTGTTCGATCTTGATCGAGATCAATTCATGTT
TTCAAGTAGCCTACCACCTGCCTGTAAAGAACTCTACGATAATATCAAAG
GTACGTCTAGTTAAGTCAGTTATTGGTTCAGTTATGACCGCGATGCACTG
ACCTTGAAATACGGCAAAGGGCACGTTATGACTCAAACAACACTATTAGA
GTTCCCTTTCTTGGAAGGCAAATCGAAAGGCGAAGAAGAGCACATTCGAA
AGAAGTACAATATTTTCTTCAATGCAGATGCCTCGAAGAAGGACTGCTGT
CTTTCCCGTAAACGGTCAAGGGACTCTAGTCTATACCGTTCGTAAGAAGA
GTCAATTCACCATCTACATAACACCTGACAAACAAAAGGTACCAAAAAGC
TTAGATTTCGATAGTGAATTTTCAGAGTATGAAGAGGAGCAAAGTTTTGA
TACGGAGAACTACATCTCGTTGACTGTTGGTGAGAATTTTGCACGTTTCA
AACTGAAGATGCATAAAGATGGTGAAGAGAGAGTGTTGAAAGAAGAATAT
GGGAAGAATATTGGAATTGAACCCAAAGAACTG
Gene-mRNA-Prot
This mRNA is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
MSTRG.13392MSTRG.13392Clytia hemisphaerica_ch_hm2_pilongene
The following polypeptide feature(s) derives from this mRNA:
Feature NameUnique NameSpeciesType
MSTRG.13392.6.p1MSTRG.13392.6.p1-proteinClytia hemisphaerica_ch_hm2_pilonpolypeptide
The following exon feature(s) are a part of this mRNA:
Feature NameUnique NameSpeciesType
MSTRG.13392.6.p1.exon3MSTRG.13392.6.p1.exon3Clytia hemisphaerica_ch_hm2_pilonexon
MSTRG.13392.6.p1.exon2MSTRG.13392.6.p1.exon2Clytia hemisphaerica_ch_hm2_pilonexon
MSTRG.13392.6.p1.exon1MSTRG.13392.6.p1.exon1Clytia hemisphaerica_ch_hm2_pilonexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0000106_pilongenomesc0000106_pilon:180607..182158 -