MSTRG.13326.5.p2 (mRNA) -

Overview
NameMSTRG.13326.5.p2
Unique NameMSTRG.13326.5.p2
TypemRNA
OrganismClytia hemisphaerica_ch_hm2_pilon (Jellyfish)

Sequence
The following sequences are available for this feature:

mRNA from alignment at sc0000105_pilon:372551..375581+

Legend: polypeptideexonCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>MSTRG.13326.5.p2 ID=MSTRG.13326.5.p2|Name=MSTRG.13326.5.p2|organism=Clytia hemisphaerica_ch_hm2_pilon|type=mRNA|length=3031bp|location=Sequence derived from alignment at sc0000105_pilon:372551..375581+ (Clytia hemisphaerica_ch_hm2_pilon)
GAGGACATCAACCAAAGTACTCCGGAAATTCAAGGTAAAATCATTATTCA
TTACAGTGGAGTCTGACAGGGTACACAaattatggagtaaggtttataag
gcatttttaCCTGAAAGGACAACAAACTTATTTCATTTAAGGGGACATTT
GATTTATAGAGGCTCGAGATAAAGAGACTTTAACTGTATTGAAAATCAAC
TTGCCCAGAGTTTGGTTAAGAAGGCTTTTGCTAAAACGTATCCGATCATT
TGTCTTTTTCATAGATAGCTACAAGAGGTATGCCAAACTGAAGAATAAAA
GTTCGGACAAGACACCTGTCAAACCAGTTGAACCTGAAGCTGTAAGACAC
GTTACCTCATTTATCTTCATTATCAAATACTATCTCTAAGAAATCCATAA
TGTatgaatttataaatttttacacTCTGATTATGACCTCTTGCAGTGAA
GGTCGAATATATAGTTTTTAGATAAAAACATGACGCTTCTGGTTATTCTT
TTCGTCAtatatgaataacttttacgtTTTTCCAATCATTTCGAATTGAA
CTATGGGATTGAGACTCGTACAAACTTATAATTAAGATGAATTTCGACGT
ATGCAACTCGGACTTTCTTTCAGGATGATGGGGTGTTTGGGGCTTCGTTA
AACAAGAAACATTCCACGCCCAAAAATGaaccaaaacaaaactttattAA
ACACGATAATACTGTTTCATGGAGGCCAAAACTAAAAGTATTGAAAAGAC
CGACGCCTAACAGAGACAAAGATAAATCTGCAGACGAACAGGTAAGAAAA
CAAGTCTGTATTATAGGATGCTTGACGCCACATATGTATGGCCACGCTCT
CCTGAAAACTAGTTATTAGAGCCATTATACTCACAGCTCTCTGTACTTTT
TATTTAGGTCATCGAACCTTCACAAGTCGAGTTATCAAAACAGGATGACA
TCGTAGAGGTTCCAGCAATACTTGACCATGTTGCACAAGACAATGTTAAG
TCAACCACACCCCTTCCTTCTATGTCAAGGTATCTAACATTCATGATAAC
ATTCTATACTAGACGTACTTGCCATCTCATTATTGGTCAAGAATAAGACG
AACAATGACTTTGGATGTTTTATAAACCAAACAAAGagctttattttcat
cttttttaatCCTCGTAATCtttttttCGTTCAGAGCTTAAAATTGCTTC
TCTTAGACTATGTACAGGCTTTACGGTATGGTTTCGTATCGCTCCGGAAT
GGtttcgtcttcttttttgacgtttcgaattttgacgtccacacttgttt
cggaacagtttcgtttcggaacgatagggaaccgtaacgtctgaacatgg
tcttaaactGGAACTTAGACTTTCTTTAGCGTATGTAGACTAACTTTTAT
CCTGCTCAGTTTTAACTTAATTTTTGTCTACTTCTTTAGAAAGTCATTGG
GAAGTGTCAAACGTAACCGATGTTCACTTCTACCAACCAACAACAACGAC
GACTCAATGGAGTGGCTCGAAAGTTGTAAACAATCTCTagaaaaaaagac
taaaaaagaGGTCACAAGTAAAAGTGATGATAAAACAAATACAGTGACGT
CTCTTGAGCAGAAAAGTCATAAACCTGACCACCAGGATGCAGTCGATAAA
GTTTCACATGACCCAATAGAGAAAGAGAATTCTAAACCTTTCAATCAAAG
GACAATCTCAATGGATGAGCTGGTCAATGGAAAACATTTGGATGAAGCTA
AAGAACAAGGTGGCGATAGTACTGCTGACAACAAGAAGCGAACTTCTGCA
AAGTCTGAGCGAACGAACAATATTTCTAAAGATGATaaagatgtttttga
ttttgaaaaagaagatgagaATAAAAGAACTGTGAAGCAAAATGATACTG
CAGAAAAGATCAAACCCAAAGATACAAGAAAACGAACGAAGAAGGTGAAG
GAGAATGCTGACAATGAAAACGCAACCTTAGCAGTAGAGGGTGAGACAAA
GGAGAACTCAAGCAAGAAGAAAGTTGGTGGTAAACGGAAGAGAGCAGCTG
AGGAGGAGAACGGTGACGAAACGGTGGAGAAAGAGACGAAGAAAGTCAAA
GTTTCCAAAAAAGCAGCTCCTGCTAAAGgcaaaaagtaagtttttttctC
TAATTGAAATTTAAATCGACTATTTCTGTGTTATCTTTGTAAGTGGATGT
CGGATTCATGTATTCATTCACTGCAATCGAAATCTATCCCTGGTCagata
tattcatgatatgcaccactgcaatgtcttctaacattacatcatggaac
CAATAGCtaattggttgcaagtgacgtaaaatcagtcaatacgtgacttt
caaccaatcagctgttaggtcagtggaagacattgcaatggtgcatatca
tgaattgcaccTTTCATCACAGGTTGGTCAGTGAGAATTTCGTCAAGATC
GATTTGCGTAAGAAAACGTACGTCCGAGGGATCAAGAAAATATCTGCCTC
CACACAAAAAAGACGTGCGTGGAAAGCGAAAACAAGTTTTGAACAACCTT
CGAAGTTTGGCAAGAAAATCTGCTTCAAGTGTGGTGGCGAAGGTCATTGG
GCCAAATTCTGCCGTGGAAGGCCCAAACAAGTCGATCTATTCAAGTAAGC
aggaaattttaaactttgtaTCAACGAAAAATTCTAATTGAACGAAACGT
TCTGTAGAAGCAagaaattttatacacaactTCATGGGGTCAAATATTTG
CTCGGATCGATTGGGACCGTCAGATCGGATAATCTTTTGAATCACACCTA
TTAATTAAATTAATTCTGGAATGTTCAAGCGAAGAACGCAGTGTAGTATG
TAAATTTAGCATATAAGTTTGTTCAATTCCTTCTTCAATAGGCGTTTAGA
CGAAGAGAAGTTATCTTTGGAGTACAAAAGTCTTGCAGAACAAAATGGGA
GTTGTTTTGATCAACTGTATGGAAACGCTGATGAGAATGCACCTTCCTTA
CTCGAAAATGCTAAGAAGTTCACTATTGATG

Coding sequence (CDS) from alignment at sc0000105_pilon:372551..375581+

>MSTRG.13326.5.p2 ID=MSTRG.13326.5.p2|Name=MSTRG.13326.5.p2|organism=Clytia hemisphaerica_ch_hm2_pilon|type=CDS|length=2490bp|location=Sequence derived from alignment at sc0000105_pilon:372551..375581+ (Clytia hemisphaerica_ch_hm2_pilon)
GAGGACATCAACCAAAGTACTCCGGAAATTCAAGATAGCTACAAGAGGTA
TGCCAAACTGAAGAATAAAAGTTCGGACAAGACACCTGTCAAACCAGTTG
AACCTGAAGCTGATGATGGGGTGTTTGGGGCTTCGTTAAACAAGAAACAT
TCCACGCCCAAAAATGaaccaaaacaaaactttattAAACACGATAATAC
TGTTTCATGGAGGCCAAAACTAAAAGTATTGAAAAGACCGACGCCTAACA
GAGACAAAGATAAATCTGCAGACGAACAGGTCATCGAACCTTCACAAGTC
GAGTTATCAAAACAGGATGACATCGTAGAGGTTCCAGCAATACTTGACCA
TGTTGCACAAGACAATGTTAAGTCAACCACACCCCTTCCTTCTATGTCAA
GTCATTGGGAAGTGTCAAACGTAACCGATGTTCACTTCTACCAACCAACA
ACAACGACGACTCAATGGAGTGGCTCGAAAGTTGTAAACAATCTCTagGA
GGACATCAACCAAAGTACTCCGGAAATTCAAGATAGCTACAAGAGGTATG
CCAAACTGAAGAATAAAAGTTCGGACAAGACACCTGTCAAACCAGTTGAA
CCTGAAGCTGATGATGGGGTGTTTGGGGCTTCGTTAAACAAGAAACATTC
CACGCCCAAAAATGaaccaaaacaaaactttattAAACACGATAATACTG
TTTCATGGAGGCCAAAACTAAAAGTATTGAAAAGACCGACGCCTAACAGA
GACAAAGATAAATCTGCAGACGAACAGGTCATCGAACCTTCACAAGTCGA
GTTATCAAAACAGGATGACATCGTAGAGGTTCCAGCAATACTTGACCATG
TTGCACAAGACAATGTTAAGTCAACCACACCCCTTCCTTCTATGTCAAGT
CATTGGGAAGTGTCAAACGTAACCGATGTTCACTTCTACCAACCAACAAC
AACGACGACTCAATGGAGTGGCTCGAAAGTTGTAAACAATCTCTagGAGG
ACATCAACCAAAGTACTCCGGAAATTCAAGATAGCTACAAGAGGTATGCC
AAACTGAAGAATAAAAGTTCGGACAAGACACCTGTCAAACCAGTTGAACC
TGAAGCTGATGATGGGGTGTTTGGGGCTTCGTTAAACAAGAAACATTCCA
CGCCCAAAAATGaaccaaaacaaaactttattAAACACGATAATACTGTT
TCATGGAGGCCAAAACTAAAAGTATTGAAAAGACCGACGCCTAACAGAGA
CAAAGATAAATCTGCAGACGAACAGGTCATCGAACCTTCACAAGTCGAGT
TATCAAAACAGGATGACATCGTAGAGGTTCCAGCAATACTTGACCATGTT
GCACAAGACAATGTTAAGTCAACCACACCCCTTCCTTCTATGTCAAGTCA
TTGGGAAGTGTCAAACGTAACCGATGTTCACTTCTACCAACCAACAACAA
CGACGACTCAATGGAGTGGCTCGAAAGTTGTAAACAATCTCTagGAGGAC
ATCAACCAAAGTACTCCGGAAATTCAAGATAGCTACAAGAGGTATGCCAA
ACTGAAGAATAAAAGTTCGGACAAGACACCTGTCAAACCAGTTGAACCTG
AAGCTGATGATGGGGTGTTTGGGGCTTCGTTAAACAAGAAACATTCCACG
CCCAAAAATGaaccaaaacaaaactttattAAACACGATAATACTGTTTC
ATGGAGGCCAAAACTAAAAGTATTGAAAAGACCGACGCCTAACAGAGACA
AAGATAAATCTGCAGACGAACAGGTCATCGAACCTTCACAAGTCGAGTTA
TCAAAACAGGATGACATCGTAGAGGTTCCAGCAATACTTGACCATGTTGC
ACAAGACAATGTTAAGTCAACCACACCCCTTCCTTCTATGTCAAGTCATT
GGGAAGTGTCAAACGTAACCGATGTTCACTTCTACCAACCAACAACAACG
ACGACTCAATGGAGTGGCTCGAAAGTTGTAAACAATCTCTagGAGGACAT
CAACCAAAGTACTCCGGAAATTCAAGATAGCTACAAGAGGTATGCCAAAC
TGAAGAATAAAAGTTCGGACAAGACACCTGTCAAACCAGTTGAACCTGAA
GCTGATGATGGGGTGTTTGGGGCTTCGTTAAACAAGAAACATTCCACGCC
CAAAAATGaaccaaaacaaaactttattAAACACGATAATACTGTTTCAT
GGAGGCCAAAACTAAAAGTATTGAAAAGACCGACGCCTAACAGAGACAAA
GATAAATCTGCAGACGAACAGGTCATCGAACCTTCACAAGTCGAGTTATC
AAAACAGGATGACATCGTAGAGGTTCCAGCAATACTTGACCATGTTGCAC
AAGACAATGTTAAGTCAACCACACCCCTTCCTTCTATGTCAAGTCATTGG
GAAGTGTCAAACGTAACCGATGTTCACTTCTACCAACCAACAACAACGAC
GACTCAATGGAGTGGCTCGAAAGTTGTAAACAATCTCTag
Gene-mRNA-Prot
This mRNA is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
MSTRG.13326MSTRG.13326Clytia hemisphaerica_ch_hm2_pilongene
The following polypeptide feature(s) derives from this mRNA:
Feature NameUnique NameSpeciesType
MSTRG.13326.5.p2MSTRG.13326.5.p2-proteinClytia hemisphaerica_ch_hm2_pilonpolypeptide
The following exon feature(s) are a part of this mRNA:
Feature NameUnique NameSpeciesType
MSTRG.13326.5.p2.exon1MSTRG.13326.5.p2.exon1Clytia hemisphaerica_ch_hm2_pilonexon
MSTRG.13326.5.p2.exon2MSTRG.13326.5.p2.exon2Clytia hemisphaerica_ch_hm2_pilonexon
MSTRG.13326.5.p2.exon3MSTRG.13326.5.p2.exon3Clytia hemisphaerica_ch_hm2_pilonexon
MSTRG.13326.5.p2.exon4MSTRG.13326.5.p2.exon4Clytia hemisphaerica_ch_hm2_pilonexon
MSTRG.13326.5.p2.exon5MSTRG.13326.5.p2.exon5Clytia hemisphaerica_ch_hm2_pilonexon
MSTRG.13326.5.p2.exon6MSTRG.13326.5.p2.exon6Clytia hemisphaerica_ch_hm2_pilonexon
MSTRG.13326.5.p2.exon7MSTRG.13326.5.p2.exon7Clytia hemisphaerica_ch_hm2_pilonexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0000105_pilongenomesc0000105_pilon:372551..375581 +