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Sequence
The following sequences are available for this feature:
mRNA from alignment at sc0000104_pilon:447572..451422- Legend: exonfive_prime_UTRpolypeptideCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below. >MSTRG.13258.1.p1 ID=MSTRG.13258.1.p1|Name=MSTRG.13258.1.p1|organism=Clytia hemisphaerica_ch_hm2_pilon|type=mRNA|length=3851bp|location=Sequence derived from alignment at sc0000104_pilon:447572..451422- (Clytia hemisphaerica_ch_hm2_pilon)
GAATTTTTAACATTTTACAACTACAACAAAAGTAACCTCTTTAAACAACA
ATGACCAACATCTTGAACTCTACCACGTCACCAAACTTGATCGATTTCAA
ATTCGGTCAACCCAAACATTACCAGAACACATCCAACGCTGTATGTTTCA
CTCTCTTCACACCTGAAGCTGTTCAAAACACTCATGGAATCATTTTGATC
ATCGGTTACTCCATTATCACTCTCTTAGTCATCATCAGTAATACCACCTT
AATCGTTGGTTTATACAAAATCAACACATTGTTCACCGTAGCGCAACGTC
TATTCATCTTGATGTCTTCAATGGATCTTATTATCGGTCTTGTTTTTCTA
CCACTTCAAATATACATGATCTACACATCAGAACGTCAAGGATGTGGACT
CATTATGATTCAAGCGTTCGTATCAATGTTCTTCCCATACATGTCTGGCT
TAATCCTACTCTTAGTCGTGGTACATCGTTTTTTCCTAGTCGTTAATACG
CGACTCACAAAGAAGTTAGCGCACCGTAGAAACGTACGTATCTGTCTCTT
CATCTCCACACTCTTTGCGGCATCCATGGCAACGTGGTATGCGTTCCAGA
AGAGATCTGACAGCCTCACAGCTCATGGTACTTATTATTTAACAGCTGGA
TTGACCGTTTGTAATTATGTGGTCATCATCACCTTCATGAATTTCAAAAT
GGTCCGATTTCTCCATAAAGCTTCAGAAAAACGTAAGTAAAGTTCAGCTC
CTACCTTATAAGAAGAAATGGCGGAATTTATTTTGGCGATTTAATGAGAC
TTCTAAATTTGGCGAGAATTAATTTTGGCAAACGACCCATTTTTTGTTGA
ATATTTAAGGGCTCTGACCATAGTGAATTTTTAATATTTGCCACTTACAA
AATGTAAAGTTCTACTTGCAGTAGCCCACAAAACTGTGGCATGTTATACA
TATTCTGTTAGGCCAATTATCCGTGAGTCTGAAAATTTAAGAATCGCAAT
GAAAAACTTTGATGAAAAAGAATATGAAGACTTTTGCGAAGAAGAGTATT
TCAACTTTGAAGAGCTTATCTATCTTCGATGAAGAAAAAACATTTTGAAA
ATCTTTTTGCGGTAGATGGTATCTTTTATCGAACTAAAATTATTTTTTCG
GAAAATTTTTCTGAAAGCTTATTTGCTTCAAAATCTTAAAAATAGTGCTT
TTTGACCAATTTTCCATCCCAATTTTTCATAGAAAAACAGCCATAACTTT
TGATGCATTTATTTAGAAAATTTTTTTTATAAAAAAAGGTGATGCAACAT
ATTATTACCGTCTTTTTAAAGTTCATAACGTCATTTTTGCTATTAAATTC
TTAATTACTCTTAAGGGATTGATTAAAAACCAATTTATAAAGGCAATTCT
TTGTTGAAAGTGTAAAAGAACCTAAAACATAACTTTTATGCTCAAATACT
AAAATCAATTTTCCGACTATGGTCAGAGCCCTTAAGGGCTCTGACCATAG
TGAATTTTTCATAATTGCCGTGTTTAAAATGTGTTTTCTGACTGATGTAA
CCAACAAAACTATGGCATGTTATACATTTTCTGTTAGACAAACTATTCCT
GAAATTGAAAATTCAAAAATTGCATTGAAAAAAATCGATGAAGAAGAAAA
TGAAGACTTTTACGAGGAAGAGTATTTCAACTTTGAAGAGCTTAGTTTCG
GCGAAGAAAAAACATTTCGAAAAAATTTTCGCAGTAATGGGGTATTTTTA
CCGAACAATAAAATTCTGCGGAAATTTTTGTAAAGTTCTTGTCGAAATCT
TCAAATAGTGTTTTTTCATCAATTTTTTCATCTGCATTTGCTTAAAAAAA
CAGTCATAACTTTTGACACATCTTTTTAGAAAAATTTTCCGCAAAATTTA
AAATAGTTCAATTCTTTGCGGACAGTCTGAAAAAAGTTCGAAACAAAAAG
GGTTATTCCCATAAAACTTAGCACTTTTTATAAAAGAAGGTGGAACATAT
TATGTAACGTGTTTTTAAAGTTCATAACGTCATTATTGCAAATAAGTTCT
TAATTACTCTTAAGGGGTTTGATTAAAAAGCAATTTATAAAGGCAATTCT
TTGTTAAAAGTGTTAAAGAATTTAAAACATAACTTTTATGTTCAGATACT
AAAATCAATTTTCTGACTATGGTCAGAGCCCTTAAGCTTAAAAAGGATGA
AAAAGGGGATTTTCGCCGAGATTTCTTTCCGCCAAAATTTATTCTCTTAA
GGTATTTCCCGCCATTAACCCTCATGTATTTAAATTCAATCATTAGTAGT
AATTTGTATTAAAAATTAACTAAAATCTCACAGAGCTGTAATCCTATATT
GTGAAGAATAACTAAAAACTAATACAGTCAACTCGCTCTTATTCGAACTC
TTTTATTCGAACCTTTCTGTAATTTGATTGGTCCTCTCAGCTGAAAATTA
ATCAAATTCTCTCAGAAATTATCTACTCATTCTATAATTCGAAAAAAATT
CTTGAACTCTTGAAAATCGAATCAGAGCAATGAGTCAACTGTATCTACCG
TACATTAGGGCCAGCGCAAACCAGTCCAACATTTCATTCAACATGATTTT
TCAATGTTGGGTAAAAAATGTTTGATGGAAAAACTTGCGTTGGATGAAGC
GAAAATCAAGGCCGAGGCAAACTGATCCAACATTTCATCCGACATGACTT
GCGGAAAAAAAATGATGGCGATCAAACTTCATCCAACACCGTCCAACACG
ATTTTTTTCTTCTTTATTTGAATTTTCATTTTTTTCCAAAAATTTAAATT
GACGCAAATTGATCCAACATTTCATCCAACTGAAGTCTAATTTGTTCGAA
TTACAGAAAGGTTTGAATCATATAAAGCATCTGACGAGGGTTTCAATTTG
ACAGATACTGAGAATTAGTTCGAATTATAGCGACATTCGGATAATAGAAG
CTCGAATTAGTGAATGTCCACTGAGTAGATCGGAACAGAAATTTTACCCT
GGCTCCTGTACGATTTACATTTCACTAATTAGTAATATTTTATTTTCTAT
CATTTTAGGCATCAAGCGAATGAGTGTTTCTAATTCAACCAAAAGTCGTA
GCACGTATCATAAACGAGTTGCAAAAACATTGGCTCTTATGTCTATAGTT
GTGTCTGTTTGTTACACTCCTATGGCTGTGTCTTTTGTCGTGTCAGGTCT
TTTCTTATTATATCGCTACCCTCACATGGAAGTCATACAAATCATTATAC
CATGGTCACAAATGGTTATGACTTTAAACTCTGCATTGAACTCTTTCATT
TATATCGTCCGAACAAAGAAAATGTTGAATCTGTATAAAAGGGTGTTGAA
AAGATTTTGTTGTCGTGTTTTTGGCAGAGAGAATAAAGTCAATCGTACTG
TTGTCATGAGTTTCGAAATGTCAACAACAGCTAGGCGTAATCAGAGGACA
GAATCCACGAACCATGGCAGTGATCGATTTTGAATGACTCTACTCGAAAT
TATCCTTCCAACGATGAACGATATCATTCAATCACTGGAATCATATTTTG
AACTTAGATTGCTTTTGATTTTTGGTCAGCCGATTCCATGTGCCAGTCAC
CTCCAGTAGTAGTAAGTAAGTTTGCGACCGCAGTCGAGGGCGACCAGAAG
GCTCCCTTTTTGTATAGCTATCTACCCGAAGGTAGGGCCACTCCTTTCCC
TAGAAACGCATGGAGTCACCTCCAAGCCCATGGGAATGTTTTTCAGCCAG
TAGGGATAGAAAAGGAGGACATTGTCAGATGAGAGTATTGGATGGAGATC
TCGAACTGAGGAGAATCAGCTTTACTGATTCGAGACAAGAAATTTTAATA
A Coding sequence (CDS) from alignment at sc0000104_pilon:447572..451422- >MSTRG.13258.1.p1 ID=MSTRG.13258.1.p1|Name=MSTRG.13258.1.p1|organism=Clytia hemisphaerica_ch_hm2_pilon|type=CDS|length=2214bp|location=Sequence derived from alignment at sc0000104_pilon:447572..451422- (Clytia hemisphaerica_ch_hm2_pilon)
GCATCAAGCGAATGAGTGTTTCTAATTCAACCAAAAGTCGTAGCACGTAT
CATAAACGAGTTGCAAAAACATTGGCTCTTATGTCTATAGTTGTGTCTGT
TTGTTACACTCCTATGGCTGTGTCTTTTGTCGTGTCAGGTCTTTTCTTAT
TATATCGCTACCCTCACATGGAAGTCATACAAATCATTATACCATGGTCA
CAAATGGTTATGACTTTAAACTCTGCATTGAACTCTTTCATTTATATCGT
CCGAACAAAGAAAATGTTGAATCTGTATAAAAGGGTGTTGAAAAGATTTT
GTTGTCGTGTTTTTGGCAGAGAGAATAAAGTCAATCGTACTGTTGTCATG
AGTTTCGAAATGTCAACAACAGCTAGGCGTAATCAGAGGACAGAATCCAC
GAACCATGGCAGTGATCGATTTTGAATGACCAACATCTTGAACTCTACCA
CGTCACCAAACTTGATCGATTTCAAATTCGGTCAACCCAAACATTACCAG
AACACATCCAACGCTGTATGTTTCACTCTCTTCACACCTGAAGCTGTTCA
AAACACTCATGGAATCATTTTGATCATCGGTTACTCCATTATCACTCTCT
TAGTCATCATCAGTAATACCACCTTAATCGTTGGTTTATACAAAATCAAC
ACATTGTTCACCGTAGCGCAACGTCTATTCATCTTGATGTCTTCAATGGA
TCTTATTATCGGTCTTGTTTTTCTACCACTTCAAATATACATGATCTACA
CATCAGAACGTCAAGGATGTGGACTCATTATGATTCAAGCGTTCGTATCA
ATGTTCTTCCCATACATGTCTGGCTTAATCCTACTCTTAGTCGTGGTACA
TCGTTTTTTCCTAGTCGTTAATACGCGACTCACAAAGAAGTTAGCGCACC
GTAGAAACGTACGTATCTGTCTCTTCATCTCCACACTCTTTGCGGCATCC
ATGGCAACGTGGTATGCGTTCCAGAAGAGATCTGACAGCCTCACAGCTCA
TGGTACTTATTATTTAACAGCTGGATTGACCGTTTGTAATTATGTGGTCA
TCATCACCTTCATGAATTTCAAAATGGTCCGATTTCTCCATAAAGCTTCA
GAAAAACGCATCAAGCGAATGAGTGTTTCTAATTCAACCAAAAGTCGTAG
CACGTATCATAAACGAGTTGCAAAAACATTGGCTCTTATGTCTATAGTTG
TGTCTGTTTGTTACACTCCTATGGCTGTGTCTTTTGTCGTGTCAGGTCTT
TTCTTATTATATCGCTACCCTCACATGGAAGTCATACAAATCATTATACC
ATGGTCACAAATGGTTATGACTTTAAACTCTGCATTGAACTCTTTCATTT
ATATCGTCCGAACAAAGAAAATGTTGAATCTGTATAAAAGGGTGTTGAAA
AGATTTTGTTGTCGTGTTTTTGGCAGAGAGAATAAAGTCAATCGTACTGT
TGTCATGAGTTTCGAAATGTCAACAACAGCTAGGCGTAATCAGAGGACAG
AATCCACGAACCATGGCAGTGATCGATTTTGAATGACCAACATCTTGAAC
TCTACCACGTCACCAAACTTGATCGATTTCAAATTCGGTCAACCCAAACA
TTACCAGAACACATCCAACGCTGTATGTTTCACTCTCTTCACACCTGAAG
CTGTTCAAAACACTCATGGAATCATTTTGATCATCGGTTACTCCATTATC
ACTCTCTTAGTCATCATCAGTAATACCACCTTAATCGTTGGTTTATACAA
AATCAACACATTGTTCACCGTAGCGCAACGTCTATTCATCTTGATGTCTT
CAATGGATCTTATTATCGGTCTTGTTTTTCTACCACTTCAAATATACATG
ATCTACACATCAGAACGTCAAGGATGTGGACTCATTATGATTCAAGCGTT
CGTATCAATGTTCTTCCCATACATGTCTGGCTTAATCCTACTCTTAGTCG
TGGTACATCGTTTTTTCCTAGTCGTTAATACGCGACTCACAAAGAAGTTA
GCGCACCGTAGAAACGTACGTATCTGTCTCTTCATCTCCACACTCTTTGC
GGCATCCATGGCAACGTGGTATGCGTTCCAGAAGAGATCTGACAGCCTCA
CAGCTCATGGTACTTATTATTTAACAGCTGGATTGACCGTTTGTAATTAT
GTGGTCATCATCACCTTCATGAATTTCAAAATGGTCCGATTTCTCCATAA
AGCTTCAGAAAAAC
Gene-mRNA-Prot
This mRNA is a part of the following gene feature(s):
The following exon feature(s) are a part of this mRNA:
The following polypeptide feature(s) derives from this mRNA:
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| sc0000104_pilon | genome | sc0000104_pilon:447572..451422 - |
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