MSTRG.13059.1.p1 (mRNA) -

Overview
NameMSTRG.13059.1.p1
Unique NameMSTRG.13059.1.p1
TypemRNA
OrganismClytia hemisphaerica_ch_hm2_pilon (Jellyfish)

Sequence
The following sequences are available for this feature:

mRNA from alignment at sc0000101_pilon:1086521..1088294+

Legend: polypeptideexonCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>MSTRG.13059.1.p1 ID=MSTRG.13059.1.p1|Name=MSTRG.13059.1.p1|organism=Clytia hemisphaerica_ch_hm2_pilon|type=mRNA|length=1774bp|location=Sequence derived from alignment at sc0000101_pilon:1086521..1088294+ (Clytia hemisphaerica_ch_hm2_pilon)
AACGGTGTTGAAGCACAGCCAGGTGCTTGGCCATGGATCATTTCCTTACA AACAGTTCGAGGATCACATTTTTGTGGCGGGACTATATTGACACCGACAT GGGTAAGAATTTCTTAGtgcttttattcaatttatCTCCAAGCCCGTCAG ATCTGTAATCATACCGATCCAGACATTCGACATTCTGGCACAAGATTACA TTTTGGCAAGAAACAAAGTGAAAGATTTCTTTAAGAAGACATTGTCCAGG TTCCGTTGGAacgttgaaaaatatttacagatttcttttttgataactGA TCTTGATCTATATTAAGGCAAATTATGTGTGAAAAAAGATGGCACCATTT TCCCTTTGGGTATGAATATGTTTGAAGATTTCGTGTCCAGGAAAGTTTTT GACATTAAACACTCTACAATTCGAAACTTAGGAAAGAGCCTCAAATTTAT TTCACAtgactttctgatttttataTATTAAAGATTTTGACAGCCAGTCA TTGTGTGaagaaatacaaagaaatacCTGGTTTCTTTATGATCGTGGCAG GTGCTCACGATAAAGAATTGAGTGAACAGTCTCAACAAAGAATCGAAGGT ATCTGAAAGCAGATAGTTTAAGGATTGTGTTCACAGCTCTGTAAAGAGCA GTTTCTAAGCAGAAATTTTTACACACTTTGACAACATCACCACGTTTAAT CTAAACTTGTGAGAACAAAATAATCTGATGAATCAGCATATCTGATAAAT GCCTTTCCTATGCTAATACAGTCAACATTTCTTTAAttcttctattattc gaatctttccatGATAGAgtttaaacaaaaatatattgGTAGTTGGCAAC CTCCGTAATTCAAATGTTCCTATAATTACCGAATCAGAGAATCGAGTAAA AGTTATCAATTAGCCCACTACAATTCATCCGAAAATGTCCCAAAACGCTT TCTTTTTAGCCAAGAGAATCATTGTTCACCCAGAATATGGGCGTTACGAT GAATTCAGTGCTGATATCGCTTTAATACAACTGGAAACTCCTCTCAGATT GAACGACCGTGTTGTTAAAGCTTGTATGCCACAACAAGGCGTTTACCCAA AAGTTGGAAAGAATTGTTACATTGCAGGTAAGATTATATTCATCGAACCA CCCGTGATTCAGTGTTTAAAACAGTTGGAACCGGTGATTAAAGGAAAGAA TGAGATTCGagcgtttcacttttttgaatcaTCATTACGGTGAACATGTC GTATCGTTCGTTGAAATGTTTATACTTATTTTAAACCAAAACTATGTCGA TTTCTATGGGTAGACTGACTTCTACATCTTATTTCAATCTCTTCTCTCAT TTTGTTTTGCATATAATAACTTACTGAGCAATGCTAAAAACTAATCCTTT CAATATCTCTTCCAGGATGGGGCGCAATCGACTACCCTGGGGATTCCGTT GACACGTTACAACAGACACGTCTCCCAGTGGTCGGTACCCCGCACAGAGG TTGCCATAACATTACTGAAGTCGTTTGCGTTGGTCTTGGATTCGGAAGCC AATCTAACGGTAAACAACATCCAAACGCATGTCGTGGTGATTCTGGTGGC CCATTGATGTGTCAACAATCAAACGGATCATGGACTGTGGAAGGTGTTGC TAGTTATGTTTACACTTATTGTAAATACTACACAGCTTACGCTCCAGTCA ACAAATACTTGCCATGGATCAAACAATATGTTAATGAattataaaacttt aaattaaatCATCAAAGAAAAGTT

Coding sequence (CDS) from alignment at sc0000101_pilon:1086521..1088294+

>MSTRG.13059.1.p1 ID=MSTRG.13059.1.p1|Name=MSTRG.13059.1.p1|organism=Clytia hemisphaerica_ch_hm2_pilon|type=CDS|length=2856bp|location=Sequence derived from alignment at sc0000101_pilon:1086521..1088294+ (Clytia hemisphaerica_ch_hm2_pilon)
AACGGTGTTGAAGCACAGCCAGGTGCTTGGCCATGGATCATTTCCTTACA
AACAGTTCGAGGATCACATTTTTGTGGCGGGACTATATTGACACCGACAT
GGATTTTGACAGCCAGTCATTGTGTGaagaaatacaaagaaatacCTGGT
TTCTTTATGATCGTGGCAGGTGCTCACGATAAAGAATTGAGTGAACAGTC
TCAACAAAGAATCGAAGCCAAGAGAATCATTGTTCACCCAGAATATGGGC
GTTACGATGAATTCAGTGCTGATATCGCTTTAATACAACTGGAAACTCCT
CTCAGATTGAACGACCGTGTTGTTAAAGCTTGTATGCCACAACAAGGCGT
TTACCCAAAAGTTGGAAAGAATTGTTACATTGCAGGATGGGGCGCAATCG
ACTACCCTGGGGATTCCGTTGACACGTTACAACAGACACGTCTCCCAGTG
GTCGGTACCCCGCACAGAGGTTGCCATAACATTACTGAAGTCGTTTGCGT
TGGTCTTGGATTCGGAAGCCAATCTAACGGTAAACAACATCCAAACGCAT
GTCGTGGTGATTCTGGTGGCCCATTGATGTGTCAACAATCAAACGGATCA
TGGACTGTGGAAGGTGTTGCTAGTTATGTTTACACTTATTGTAAATACTA
CACAGCTTACGCTCCAGTCAACAAATACTTGCCATGGATCAAACAATATG
TTAATGAattataaAACGGTGTTGAAGCACAGCCAGGTGCTTGGCCATGG
ATCATTTCCTTACAAACAGTTCGAGGATCACATTTTTGTGGCGGGACTAT
ATTGACACCGACATGGATTTTGACAGCCAGTCATTGTGTGaagaaataca
aagaaatacCTGGTTTCTTTATGATCGTGGCAGGTGCTCACGATAAAGAA
TTGAGTGAACAGTCTCAACAAAGAATCGAAGCCAAGAGAATCATTGTTCA
CCCAGAATATGGGCGTTACGATGAATTCAGTGCTGATATCGCTTTAATAC
AACTGGAAACTCCTCTCAGATTGAACGACCGTGTTGTTAAAGCTTGTATG
CCACAACAAGGCGTTTACCCAAAAGTTGGAAAGAATTGTTACATTGCAGG
ATGGGGCGCAATCGACTACCCTGGGGATTCCGTTGACACGTTACAACAGA
CACGTCTCCCAGTGGTCGGTACCCCGCACAGAGGTTGCCATAACATTACT
GAAGTCGTTTGCGTTGGTCTTGGATTCGGAAGCCAATCTAACGGTAAACA
ACATCCAAACGCATGTCGTGGTGATTCTGGTGGCCCATTGATGTGTCAAC
AATCAAACGGATCATGGACTGTGGAAGGTGTTGCTAGTTATGTTTACACT
TATTGTAAATACTACACAGCTTACGCTCCAGTCAACAAATACTTGCCATG
GATCAAACAATATGTTAATGAattataaAACGGTGTTGAAGCACAGCCAG
GTGCTTGGCCATGGATCATTTCCTTACAAACAGTTCGAGGATCACATTTT
TGTGGCGGGACTATATTGACACCGACATGGATTTTGACAGCCAGTCATTG
TGTGaagaaatacaaagaaatacCTGGTTTCTTTATGATCGTGGCAGGTG
CTCACGATAAAGAATTGAGTGAACAGTCTCAACAAAGAATCGAAGCCAAG
AGAATCATTGTTCACCCAGAATATGGGCGTTACGATGAATTCAGTGCTGA
TATCGCTTTAATACAACTGGAAACTCCTCTCAGATTGAACGACCGTGTTG
TTAAAGCTTGTATGCCACAACAAGGCGTTTACCCAAAAGTTGGAAAGAAT
TGTTACATTGCAGGATGGGGCGCAATCGACTACCCTGGGGATTCCGTTGA
CACGTTACAACAGACACGTCTCCCAGTGGTCGGTACCCCGCACAGAGGTT
GCCATAACATTACTGAAGTCGTTTGCGTTGGTCTTGGATTCGGAAGCCAA
TCTAACGGTAAACAACATCCAAACGCATGTCGTGGTGATTCTGGTGGCCC
ATTGATGTGTCAACAATCAAACGGATCATGGACTGTGGAAGGTGTTGCTA
GTTATGTTTACACTTATTGTAAATACTACACAGCTTACGCTCCAGTCAAC
AAATACTTGCCATGGATCAAACAATATGTTAATGAattataaAACGGTGT
TGAAGCACAGCCAGGTGCTTGGCCATGGATCATTTCCTTACAAACAGTTC
GAGGATCACATTTTTGTGGCGGGACTATATTGACACCGACATGGATTTTG
ACAGCCAGTCATTGTGTGaagaaatacaaagaaatacCTGGTTTCTTTAT
GATCGTGGCAGGTGCTCACGATAAAGAATTGAGTGAACAGTCTCAACAAA
GAATCGAAGCCAAGAGAATCATTGTTCACCCAGAATATGGGCGTTACGAT
GAATTCAGTGCTGATATCGCTTTAATACAACTGGAAACTCCTCTCAGATT
GAACGACCGTGTTGTTAAAGCTTGTATGCCACAACAAGGCGTTTACCCAA
AAGTTGGAAAGAATTGTTACATTGCAGGATGGGGCGCAATCGACTACCCT
GGGGATTCCGTTGACACGTTACAACAGACACGTCTCCCAGTGGTCGGTAC
CCCGCACAGAGGTTGCCATAACATTACTGAAGTCGTTTGCGTTGGTCTTG
GATTCGGAAGCCAATCTAACGGTAAACAACATCCAAACGCATGTCGTGGT
GATTCTGGTGGCCCATTGATGTGTCAACAATCAAACGGATCATGGACTGT
GGAAGGTGTTGCTAGTTATGTTTACACTTATTGTAAATACTACACAGCTT
ACGCTCCAGTCAACAAATACTTGCCATGGATCAAACAATATGTTAATGAa
ttataa
Gene-mRNA-Prot
This mRNA is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
MSTRG.13059MSTRG.13059Clytia hemisphaerica_ch_hm2_pilongene
The following polypeptide feature(s) derives from this mRNA:
Feature NameUnique NameSpeciesType
MSTRG.13059.1.p1MSTRG.13059.1.p1-proteinClytia hemisphaerica_ch_hm2_pilonpolypeptide
The following exon feature(s) are a part of this mRNA:
Feature NameUnique NameSpeciesType
MSTRG.13059.1.p1.exon1MSTRG.13059.1.p1.exon1Clytia hemisphaerica_ch_hm2_pilonexon
MSTRG.13059.1.p1.exon2MSTRG.13059.1.p1.exon2Clytia hemisphaerica_ch_hm2_pilonexon
MSTRG.13059.1.p1.exon3MSTRG.13059.1.p1.exon3Clytia hemisphaerica_ch_hm2_pilonexon
MSTRG.13059.1.p1.exon4MSTRG.13059.1.p1.exon4Clytia hemisphaerica_ch_hm2_pilonexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0000101_pilongenomesc0000101_pilon:1086521..1088294 +