MSTRG.12878.3.p1 (mRNA) -

Overview
NameMSTRG.12878.3.p1
Unique NameMSTRG.12878.3.p1
TypemRNA
OrganismClytia hemisphaerica_ch_hm2_pilon (Jellyfish)

Sequence
The following sequences are available for this feature:

mRNA from alignment at sc0000099_pilon:1001232..1006809+

Legend: five_prime_UTRexonpolypeptideCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>MSTRG.12878.3.p1 ID=MSTRG.12878.3.p1|Name=MSTRG.12878.3.p1|organism=Clytia hemisphaerica_ch_hm2_pilon|type=mRNA|length=5578bp|location=Sequence derived from alignment at sc0000099_pilon:1001232..1006809+ (Clytia hemisphaerica_ch_hm2_pilon)
CAGCCAATAGGTATCAAGGTTTTAGATCACGTGTTCAACTTCAACCAATA
GAATTCGTCAAAATAAAGATAACACAAACCACTCTGGCATTCCCATTTAA
GTCATTTTCTCTAACAGATTCGCTAtttcaaatcagcaaaaattcGAAGA
AAGGTAAAGTTCAACAGTACAAAATCTCCAAACGCTAAGCTCATCatgga
aattttcaggaaaacaTTCTTTCTTGCATTAATTGTCACAACTCTCGTTC
ATTGTAAAAGTAAGTAAAACAGTTTGTTGTacattttatctttttaatct
ttaaatAGTCTTGTTGAAAATACCAAAGCTACACTTTCTTAAATCACGCA
ATATTAGCAGTAAGCTTttaaaaaagtcagaaaattatACCGTCTTTTCC
CTAGAAACATATTTGAGCAAAGAAGGTGAACGTTAAGTGAGCCCAAGTGG
ATACCTCGGCTCTGTCACTACTCTATTTATAATTGCTAGATGTGATTTTG
AAATGATTTATCAACACGTTTTTTGCATGTAAGCTAACATTTGCTTGTGA
TCATGATACAAGAAGTATTGAAACGTcaagaatgaacaaaattttgtttt
tcgtctttttttttttttgagaataatcTGACccagaagaattttttttc
aagtaccACTCTACTTGTCTGAAGATTGTCAGCGCAATAGGTTTTGCAGA
GATTAATTttcaatacagggtgtccctaataaaagtatcgagtttgaaca
tgcgattgagtaaaaaagtttgtgtgtgttatcgctaaaatataagaacg
ttctccatcacataggctcattacaaaaggtagttacaacgtataaatta
atcaatagcccttttactattcccctgttgcataaatgtacgtctttaaa
aatcaaaattaataaaaattcaaattccctcgttttacttttttattgtt
ccatacattccatttttattattttcatagttttacatacgattctttac
aaacatgttttaattgttgcgtttttctcatgatcgtaatttcgttgcat
ttgtaaacaggcggagtatgtttttattgttacgtaatgacaaagaaaaa
agagggagagcttaaaatacaattttgtgaatacacacttaaaactttct
actcaggtcgtgttcagacctgaaagtttaagtttaagattcaagtagta
ctttgttgatatgggaatttaattataatcacttttcttttgtcatcatc
gattggcgatctcgaggaatctcctttcctaacttgaaatcatgtcatct
tctctcttgagatactttgaaacaaaaaagatttcagggaatccctctgc
aaaacactaattcgtgGTCGTTGAAGCCAtttactgctagagatgctccg
agcgtctctaagtcataaatttcacgttcttttttcttcatttacaaaag
gagcatgcttttcacttgtgaattctgatttcgtctattcagaaaactgt
aacgaaatcgtaaaaactttttttttaaactagagggtgattccttttta
aactttggtttaactaatgaggagcgtgccgttagatacaaaaggaatat
aaaagaaacatgtagacctaattgctttaaaccttggtctgaacacgacc
tcaatcgcatgttcaaactcgatacttttattagggacaccctgtattac
tGACCGAGTAAAACGTCATAAAGCGTCATAATGTGAATGTTTTATGGAGC
AAGTGTCATTTAAATGGTCCCCAATCATTGACGTATAAAATGTAATGTAT
AAAAATCAATCATTCTTTGCAGAAACCAAAGAAGATAACGAGCTGAAGAA
GGAAATCGAACGCGAGGTTCGAAAACAGTTGCAAGATGTggaaaaagaac
aagaaaagctatcagcaaaagacgtgagcgagaagaaacacaagcaaaaa
gatgatgatgatgcggaagaagttcttgaagatgatgatgatgaaattga
tgaattcgaagatgGTATGCATATTCTGTTGctcttattattttattttc
atgactttaatacatttcttcattttcgcatagcgaaagtattacgatag
cctttcgcggcggcggtgtcctcggaaaaaaaattagaaaacgaaagtgc
ttgatacggtggacgaactcactaaatttaatttacaaattacacgctcg
tataaccacgcaccctcgcgagccagggcctataaacgattctgcgactt
aaagaggccagtaccgtataattggaggaatcgtttaatcttatatcccc
cgtcaacgcgtccatcagaatcatcaatagcgtaagggggttagataagc
catgggGTCGAGGGAgttaaccacggacgattttcgcgggttttctttgg
attacgtcatatatctttgtatCTTTAGCTccacaattttgattttttct
ttattttcttataagcatatactttataagaatcaaatcaataactctta
atagacggtaatatacctttcggtaattagttcttacaaagtaaacaagg
gatggcgcacaatatgagcttacttatttttcttataagcatatacttta
taagaatcaaatcaataactcttgatagacggtaatatacctttcggtaa
ttagttcttacaaagtaaacaagggatggcgcacaatatgagcttactta
tttttctcataagcatttactttataagaatcaaatcaataactcttgat
agacggtgatatacctttcggtatttagttcttacaaagtaaacaaggga
tggcgcacaatatgagcatattcatttttcttataagcatttactttata
agaattaaattaataactctcgatagacggtgatatacctttcgttAATT
AGTTATtacgaagtaaacaagggatggcgcacaatatgagcatattcatt
tttcttataagcatttactttataagaaacaaatcgaaattttcgacttc
aagtcgtcttgtttaatttttcaaaagaaaagtcgAGAGAATTTTGGGTT
CTTTTACCCTTTTAACCAATTAAACCCTAGATTTTCTTGGAATTAGGCTC
cattgttcttatttctttGACCTTTGTTACCATACTccagggataatcag
atggtttgagatatatAGATTACAGAAACCTTCTACTATGGTCCttagta
aaacctcaaagtattttagtgtaacaattttccaaaattgagatatcaaa
atttgaaatttttgaaaataggctcttacacggttcttacgttgaaattc
tattgtttttattcaaaagccAAAAATTTGTAAGTTAAATAACTTGACTC
TGGAAAATagttagacaaaaatattttgagattttgctcaggacaatagt
AGTATCCCACAGGtcaaatattacaaaccatctgattatccctttaagta
gCCTTGaaaaaaaGCATTAATAGCTTTCCTGGCTGATTATACTTAAAATT
CTCAATATTACATTATCAGAAGATGAAGATTTAGTCATTCAACATGCACA
ACGAATAGCTTCTTTAGAGATGAAAAAAGATCCATTATTCCTTGGCAATG
TCATTAGGCGCCGTCGTGATGGCTGCAAAAACCTTTTCAATGTACCATTA
AGCTCATATCGAAGACGAACTTTCGCTGCTTTACCCTCTAATTGTTTTCG
TTGCTGCAGCAGCGGAACCAAGTAAGTATATACTTTATAAGCCgaaatta
aattttgctgaCAGGCCAGTGGAAGCAAGGAGGCTGGAGAAACTTCAGTC
cgaatttcatctcattttgagcatTCCCACTTTTACGGTCGTTCCGCCAG
GATAATTAtggcaatcaaaaaaatatccTCATAGAAACTTAAAGTATGAT
GTGCTCGAAATAAATAACTTTAAATTCTTCCCTCTAGCAACCCACCCacc
tggcacacaacgttcttttaacGTATATTTAACGCtcaaaacgtccatat
aacgttagatggatgttaaaacaacgttgtgtgccagctgggaaaacAAA
CTTATGTGTAACGTATACTATACTTATGAGGGAGGTTTGATAATTTGCGT
GAATAGTTTTCTATAAATGGTGTGCGGATAGAACCTCTGATAGCCAACCC
TTTAGAAAGAGATTTAATTTCTGAGCGAATGTGGGACTATTGTGAGTTTT
CGTTGTTTTGTAACCTTTAGAAATAGACCCTTCCCTATAGGCATTCAACG
TCTTATGGACATTAAATGGACGGTTTAAAGACATTTGGACGTCGTCgaaa
cgtacattagacgtccaaaagatGTTTGTGCCCATTGGGTTACTGTCTAC
ACATAAACACTTATGCACTTATTTTTGGCTTAAGTTCCTCCTTGGACTGG
ACTCCCTAAAACTTTATTGCATCGGTGTTAAATGTACATTATGATGGCAT
AATTAAGAATggtggatttaagacaatagagcaagtacgttgGAAATACG
CAAAGGAGTGCAACTCTCATTAAAAGACAGTAAaaatacaattacaaatc
tCTTCTTCTGATAATTTTGTGGTCTAAAACCACCTATTTGATAGGATAAG
ATCATAGGTGTTTGTCTATTGATGTTGTTGTTGTTGATGATTAAGCTTTA
TAACATTTTTGTTTACTTATTTTTCAGATTGTGCCGTCGCCGAGATGACA
GCAGTCGTCGACGAAGAAGCTGCACAAATGGAATCAGTGACAGCAAAAAA
TAATTTATCCCACAGAATCTACTACTATGGGTGCCTTCAATTATTTAGCT
TTATGTTTTGATTTTTGTAACAATATATAACTTGCTTTAGCAAcaaaaaa
aattacgataatatttacttttgatttgttttcatgCCATCTCTATTCCT
AGTACCCATTTCCATTCACCCCTACAAAGAGATAAACCTTTAGAAGCTGT
TCGTTATAAAAAATACCCAACAATTTCTCAAAATGTGGATTTTAAAATGG
GTTTCAAACTAAAATTTTGTACCGTTGGAAAATCCATGCCCTCAGCTGTT
TAAAACAACAAAtggaattttgacttaaaaaggaCTTGTTCTGACCTTCT
ACGGCCAGTAGATATACTCCTTCATATCACTCAGGTACCAACTTTTTAAA
CGATaactttttgataacttttgaaatatttgtatGTCAAACATGAATTG
ACATCTTTGATGAGAATTTCAGCATCATTAATGATGTATTCACTTTTTGA
GAGTACTGAAAATAGGACcccttctaactttttttcactttaattttttt
gctcaaattttgcgaGGGAGTTCCCCGTTAACTGTATTTTTGGGGGAGAG
GATCTTGCCACCTGTTggtatcttgtattttacagataGATGGTACAGGC
TTGCATTGCAGGCAGAATTTCAGCGAAATCCGATGAGTAGTTATGCTGAA
AGTAGTCATGTTAGGTAAAAAATGGACCGGtcaaatttcggattttttga
tttatttgaccaatctattattttttctacattttatattaGGAAATGTT
ATCAAAGAAATGAGACAAAGATCTCGTA

Coding sequence (CDS) from alignment at sc0000099_pilon:1001232..1006809+

>MSTRG.12878.3.p1 ID=MSTRG.12878.3.p1|Name=MSTRG.12878.3.p1|organism=Clytia hemisphaerica_ch_hm2_pilon|type=CDS|length=2136bp|location=Sequence derived from alignment at sc0000099_pilon:1001232..1006809+ (Clytia hemisphaerica_ch_hm2_pilon)
atggaaattttcaggaaaacaTTCTTTCTTGCATTAATTGTCACAACTCT
CGTTCATTGTAAAAAAACCAAAGAAGATAACGAGCTGAAGAAGGAAATCG
AACGCGAGGTTCGAAAACAGTTGCAAGATGTggaaaaagaacaagaaaag
ctatcagcaaaagacgtgagcgagaagaaacacaagcaaaaagatgatga
tgatgcggaagaagttcttgaagatgatgatgatgaaattgatgaattcg
aagatgAAGATGAAGATTTAGTCATTCAACATGCACAACGAATAGCTTCT
TTAGAGATGAAAAAAGATCCATTATTCCTTGGCAATGTCATTAGGCGCCG
TCGTGATGGCTGCAAAAACCTTTTCAATGTACCATTAAGCTCATATCGAA
GACGAACTTTCGCTGCTTTACCCTCTAATTGTTTTCGTTGCTGCAGCAGC
GGAACCAAATTGTGCCGTCGCCGAGATGACAGCAGTCGTCGACGAAGAAG
CTGCACAAATGGAATCAGTGACAGCAAAAAATAAatggaaattttcagga
aaacaTTCTTTCTTGCATTAATTGTCACAACTCTCGTTCATTGTAAAAAA
ACCAAAGAAGATAACGAGCTGAAGAAGGAAATCGAACGCGAGGTTCGAAA
ACAGTTGCAAGATGTggaaaaagaacaagaaaagctatcagcaaaagacg
tgagcgagaagaaacacaagcaaaaagatgatgatgatgcggaagaagtt
cttgaagatgatgatgatgaaattgatgaattcgaagatgAAGATGAAGA
TTTAGTCATTCAACATGCACAACGAATAGCTTCTTTAGAGATGAAAAAAG
ATCCATTATTCCTTGGCAATGTCATTAGGCGCCGTCGTGATGGCTGCAAA
AACCTTTTCAATGTACCATTAAGCTCATATCGAAGACGAACTTTCGCTGC
TTTACCCTCTAATTGTTTTCGTTGCTGCAGCAGCGGAACCAAATTGTGCC
GTCGCCGAGATGACAGCAGTCGTCGACGAAGAAGCTGCACAAATGGAATC
AGTGACAGCAAAAAATAAatggaaattttcaggaaaacaTTCTTTCTTGC
ATTAATTGTCACAACTCTCGTTCATTGTAAAAAAACCAAAGAAGATAACG
AGCTGAAGAAGGAAATCGAACGCGAGGTTCGAAAACAGTTGCAAGATGTg
gaaaaagaacaagaaaagctatcagcaaaagacgtgagcgagaagaaaca
caagcaaaaagatgatgatgatgcggaagaagttcttgaagatgatgatg
atgaaattgatgaattcgaagatgAAGATGAAGATTTAGTCATTCAACAT
GCACAACGAATAGCTTCTTTAGAGATGAAAAAAGATCCATTATTCCTTGG
CAATGTCATTAGGCGCCGTCGTGATGGCTGCAAAAACCTTTTCAATGTAC
CATTAAGCTCATATCGAAGACGAACTTTCGCTGCTTTACCCTCTAATTGT
TTTCGTTGCTGCAGCAGCGGAACCAAATTGTGCCGTCGCCGAGATGACAG
CAGTCGTCGACGAAGAAGCTGCACAAATGGAATCAGTGACAGCAAAAAAT
AAatggaaattttcaggaaaacaTTCTTTCTTGCATTAATTGTCACAACT
CTCGTTCATTGTAAAAAAACCAAAGAAGATAACGAGCTGAAGAAGGAAAT
CGAACGCGAGGTTCGAAAACAGTTGCAAGATGTggaaaaagaacaagaaa
agctatcagcaaaagacgtgagcgagaagaaacacaagcaaaaagatgat
gatgatgcggaagaagttcttgaagatgatgatgatgaaattgatgaatt
cgaagatgAAGATGAAGATTTAGTCATTCAACATGCACAACGAATAGCTT
CTTTAGAGATGAAAAAAGATCCATTATTCCTTGGCAATGTCATTAGGCGC
CGTCGTGATGGCTGCAAAAACCTTTTCAATGTACCATTAAGCTCATATCG
AAGACGAACTTTCGCTGCTTTACCCTCTAATTGTTTTCGTTGCTGCAGCA
GCGGAACCAAATTGTGCCGTCGCCGAGATGACAGCAGTCGTCGACGAAGA
AGCTGCACAAATGGAATCAGTGACAGCAAAAAATAA
Gene-mRNA-Prot
This mRNA is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
MSTRG.12878MSTRG.12878Clytia hemisphaerica_ch_hm2_pilongene
The following polypeptide feature(s) derives from this mRNA:
Feature NameUnique NameSpeciesType
MSTRG.12878.3.p1MSTRG.12878.3.p1-proteinClytia hemisphaerica_ch_hm2_pilonpolypeptide
The following exon feature(s) are a part of this mRNA:
Feature NameUnique NameSpeciesType
MSTRG.12878.3.p1.exon1MSTRG.12878.3.p1.exon1Clytia hemisphaerica_ch_hm2_pilonexon
MSTRG.12878.3.p1.exon2MSTRG.12878.3.p1.exon2Clytia hemisphaerica_ch_hm2_pilonexon
MSTRG.12878.3.p1.exon3MSTRG.12878.3.p1.exon3Clytia hemisphaerica_ch_hm2_pilonexon
MSTRG.12878.3.p1.exon4MSTRG.12878.3.p1.exon4Clytia hemisphaerica_ch_hm2_pilonexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0000099_pilongenomesc0000099_pilon:1001232..1006809 +