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Sequence
The following sequences are available for this feature:
mRNA from alignment at sc0000098_pilon:115234..120882+ Legend: five_prime_UTRexonpolypeptideCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below. >MSTRG.12753.1.p1 ID=MSTRG.12753.1.p1|Name=MSTRG.12753.1.p1|organism=Clytia hemisphaerica_ch_hm2_pilon|type=mRNA|length=5649bp|location=Sequence derived from alignment at sc0000098_pilon:115234..120882+ (Clytia hemisphaerica_ch_hm2_pilon)
aaaaaacgaAGTTTCCAGCGAttgaaaaaagctggaaaaacAGGTTCTCG
ACAGTTTTGCACGGAAATGCATTTAATTATGCATGCACGTCATTAAGTAA
TAATGAGATGCATGCGCTATTCAGCCTTTATATTCTgttcaaaaaattga
gaaaatcctCGCTCTTGCATTCACTCAAAGAAGTTAACtcatgtgtgtgt
gtgtgtgtgtcttgTAAAGCATCGTGTATCTTGTGAGAAGAGGAAAACCA
ACATGGCTGAGCAACAACAGAATGTCGTAGACTACAATCAACTGCAAGTT
ATAATACAACAATTAGTTCGCAACGAAATGCAACCAGCTATGCAACAAGC
TGAGAATCGCGCCAAACAGGCACTCGATCAAACAACAGCTAGCACTtcga
caaatttttcaaaattaaaagctAAATTGGATAAGCAGAGATTAAATGAC
AACATCACATTTACGAAAGCTGGCCACACCGATCAATTCAAACACAATCA
ACAAGTGTTGGAGGTTATTGATGACACCTTAGAAGCCATGGAATCCGCCG
ACGTACAAGCAATGAAAGATCATCTAGAAAAAGGTAGGAATTTGATTCTA
ACCAGGGTGAAGCATTTGAGAATCGCTGATACATACGGCTGGTTCACTGT
GAAAGAATTTAAGGCTAACGAACTGACTTCAGGAGAGGCAGAagaaaaaa
gactgaagagagctataaaaaacgcggaatcagtaaaaactaaacttttc
aaaaaggcCAGGTTCGATGACGACAAAGAAAAGCCCAAATCAAAACAAGA
CTCAAAATATAGAATGGACGATATAGTTTGTCACGGATGTAGGAGAGTCG
GCCATTATTTATCACATTGCCCCTTTACCTCAGCTTCTACAACCACATCG
CAAATACCCTCGATTGCCTACTCGACAACAAGGTCTTCGTCTACTAATAA
AAATCCTTCTTCAACAAATACTAAGAGTAAATCCGGTTAAAAAACTATAT
AATTGAGTTATGCTTTATCGACATTacaaaaagacaatttattcgtgtta
ttaattttaaaaaacaaacactcGCAATCTGCTGAATTTATAGACtataa
taatatatttttatcataTGACTAACGTTGTGTTCTTAAATTGCCATCAT
AAGCCCATTATTCGtgtttatgatttttaagaatGTCACTGATTTATAAT
TTATGCCTTTGTATTGGCAAATGAACGCATGACAATTCGTCGAATGAGAT
attttaccttgatcaaatttgtttttaattactttctttccttttcgact
ttttgcatttttagaaaagttttttcttactttGCCACTCCAGAGAGATT
TTGGGAATTTGATCAATCTACCGAAAGTCTATCTGTCGCCGGAAGAATTC
AGGAATTTTCAAACTTCTGGGAAAATGAATTGAAAGCGTCGAATTTCGCC
CTCGGTATCGTGCGGGAAGGCTACAAAATACCATTCGAATCGGAACCTCC
TCCATTTTTCGCCAAAAACAACGCATCTAGCTTAAAGAATCGAGAGTTTG
TCAAAGATAGTATTGAAAAGCTTTTAGAAAACGGTTGTATTGAAAAAGTG
ACAGAGCCACCTTATTGCATCAATCCGCTGACCGTTGCAGAAAGGAATTC
CAAACTTAGGCTAGTACTAGATCTCAGGCACGTAAACAAACACATTCAGC
CAAACAAATTCTCATacgaaaatataaaacaggTTTCTGAGATGATTAAT
AAAGACGATTTTCTAATTACCTTTGACCTCAAAAGTGGGTATCATCACGT
ACCAATTAACTTAAGATTTCAGACTTTTCTAGGATTCGCTTGGGAATTTA
AcagcgaaatgcaattttttgtatttaaagTTTTACCTTTTGGTTTGAAT
ATCGCATGCTTAGTCTTTACAAAGCTTATGCGTCAATTAGTCAAGAGATG
GCGTTCAAAAGGAATAAAATGTGCTATGTATTTAGACGACGGTATCGTAG
GGGACAATTCATACTTCTCGTTAATACAAACAAGGGACCTGATGCTCAAC
GATATGCGATCCGCTGGTCTAACagttaatttcgaaaaatctaGCCTTGA
AccagagaaaaacaaaacatggTTAGGATTCATTATAGACACAgaaaaca
tgaattttgaagttccaacaccaaaaatccaaaaagtgctCAAGCTAATT
TCAGAGGCGTTAAATAGTGAATTCTTATCGgcaagaaaaatttccagaat
AGCAGGCAATCTTATTGCTATGGCACCAGCTATCGGTCCGATCGTTTATT
TATTCacaaaacaaatttacaaattcgTCGAATCAAGTTTTTCCTGGGAC
AAAAAGCGTCTTTTGAGTCTTAACGTTTTACAAGAACTCGAATTTGGTAC
AACAAtctagaaaaagtaaaaactttcAGAATAAAAACGAAACCTGAGAT
CACCAGAATTATTTTTTCGGACGCAAGCGGTACCGGTTACGGAGGTTACG
TCGtacaaaagtttggaaatattATAGCAAAAGGAGATTTCGACCAGACC
GAAAGGGAAACAAGTTCGACATTTCGTGAGCTAACAGCAGTTAAATACAT
TTTGCTATCTTTTCCTCAATTACTCGAAAACGAGACAGTGGAGTGGTTTA
CCGACAGCGACAATATCTGTAAAATTATTAATCGAGGTAGTACAAAACAA
CACTTACAAAACATTGCAATcgatattttcaacatttgtttACTACACAA
TATCGAAATTTATCCTACTTGGATCCCTCGAGCGTTAAACCAAACAGCcg
atataatttcaaaatcgaTCGACACAGATAATTGGTCCATTGACAACGAG
ACTTTCGATTACATTATTAAAAACTATGGACAAATTACAATCGACAGATT
TGCAGATAACCTAAACAAAAAATCCCCTAGATTCAACTCTCGTGAATACT
GCCCAGGGACATCAGCAATCAACGCATTTTCATGTCATTGGGGAAAAAAT
GAGGTTAATTGGCTTTGCCCTCCCATATCACTAGTAGGTAAAACTATTCA
GCACTTGAGAAACTGTAAAGGTAAAGGAATATTGCTTGTTCCCTTGTGGC
CTTCGTCATACTATTGGCCATTACTGACGTCAAACGGTCTTCAATTTGAA
CCTTTTGTAAGAATGTTTTTAGTACTAGATCCTTTCTTTGTAAATTATTC
CAACACTAAATGCGTTTTTGATGGCTTTGCCAAATTTTATTCCTTAGCCT
TGTTCATCGATATGTTAGAATAAGAAATAACCTATTGAAATAAATACAAC
TTCTTTGTCATCTAATCCCCTTAACAATTGTATTTTTTCCTGTTTTATGT
TGACGACATTTCTCGCTTCATTGGAAGCCTGTTTACCATGATTACAACCA
AGTGAAAGATATGCTTCCGTGACAATGCCTTCGTGCATCACTGTTTCGGC
GTCAATGTCTCCGTACAAACGTATTTAAAGGAGCTCCGCTTTCTCCAACG
ATTATCAATTTGCATTATCATTTCATGATATGATCACCACAAAGGTAACA
AAAAactattcattttctttttttcccaaCAGATCACGGCGACGCGCCAG
GGTTGAGAGAGAAACTACTGAACATTAAGGACAGAAACTTGAAACGAAAA
GCTGAAAGCCTTCCCGTACTATTAGAAGCAGCCTATGCAAAATCTACCCT
AAGGAAGTACAAGCCAGCCTGGGAGAAATGGTTAATCTGGTCCGACCCCT
TTGACGAAGTGATTAGCTGCCCCGCCGATCCGATCTACGTCGCAATTTAC
ATAAACGATCTTACCAATTCTTTCGCGACCGAAGGTGCACTAACTGCAGC
AATTTTGGGTATCCGTTGGGGCCACTTGAATTCCGGATTTGATTCTCCGA
CCAATCATCCGCTCGTCAGACTAGCAATCGAAGGCGGTAAACGTATAATA
GCAGAAAGGAGATCCCCCTTAAAAAATTGCCACAGAAAGGAGCCCTTGTC
CACAGATCTTATCAAAAATCTCGTACGGAAATATTCAACCTCTACTAACT
TGGTCGATATTCGCTTCCTTATCATGGTCCTTTTAGGATTCGCAGGGTTT
TTTAGAATCAGCGAGATACTGAAAATCCAGTTGAAAGAAATAACATTCGA
TAAGTCTGGCGCAACAGTTTATttacctttttcaaaaacagATCAAGTAC
GCGAAGGTAACATCGTTTTTATTAGTAAAACAGATACAGAGTGTTGTCCA
ATCTACTGGCTTCGTAAGTATCTAGCATTGTCCGGGCTAAGACACAAGCC
TGAAGCATACTTGATTTGCCATCTATACAAGACGAAAACAGGACACAACG
TGCATAGCCACCGCCCAATATCCTACACGACAGCCCTGAGCACATTCAAA
GACCATATCTCAAAAATAACCGACCCTACCATATACGGTTTACATTCCTT
GAGGTCAGGAGGAGCATCAGAAGCTGCGAACAACGGTATTTCTGATCGTC
TTATCTCAAAACATGGTCGATGGTCTTCAAACACCAGCAGGAACACTTAC
ATAAAAGACAAAGCCGAAACTAGATTTAGAGTTTCACGTTCATTGGGAAT
TTAAATGCCCATTTATTATATTTAAAGAACATGGtcgttttttcctcttt
ctttttctctctcgtttttAATGCAAGCAaataccaatgaaaaagtaact
ttattgttttctatttttctgttcatttcgaaaaggaaaaatagtCGAGA
AACGAAGTTTCCGGCGAttgaaaaaagctggaaaaacAGGTTCTCGACAG
TTTTGCACGGAAATGCATTTAATTATGCATGCACGTCATTATGTAATAAT
GAGATGCATGCGCTATTCAGCCTTTATATTCTgttcaaaaaattgagaaa
atcctCGCTCTTGCATTCACTCAAAGAAGTTAACTCATGCAAATTCAAAC
AATTTCGTTTTCTATTTCATGCACTTATCTGGACCAACGTACCAACCGAT
GCACTTATCCGGACGAACGTACCAATCCATACACTTATCCGGACGAACGT
ACCAATCGAAAAGACACCGATTCAACATACAAAGAGAACTAAAGATCAGA
ATGGAAACCCTAGCCACGGAAAGGACAACCAAGGATCAATAACATTGGAA
CAATCGGACGAGCGCTTCTTCCTGGACTTCAAAAACCACCGACAACTTAT
TATCAAACATGGAATCGTGGATGTGTTTTATCAAGTTGATGAATTTGGTA
TTCCTTAAACGAAAATTACAAATAGATTGATAACAATTTGAAGCTATGAA
GCTCATACCTCGTAAAAACCCATTATAACaattataatttaaatttatga
TCTCTTACATTTGACGGTCAAACACTTGCAGATGAAATAATttcgttaga
aaaatatttgtacATAAAGGGGAGAAGACCTTTAACCTCCGAAGGTCGGG
GTGACGGATGCCATTGGTTCGGAGATAATGTTTCCTCCAGAATAAACAGC
CACTGGGGGTTTTACGCTACACGCTTCGTCACCAAAAATTCAGTTGTATT
TTATTTGAGCTTATCCAACTTGTAATTTACTACTAattttgttaaacatt
ttttttttaccacgAGTGTTAATGCAAGCAaataccaatgaaaaagtaa Coding sequence (CDS) from alignment at sc0000098_pilon:115234..120882+ >MSTRG.12753.1.p1 ID=MSTRG.12753.1.p1|Name=MSTRG.12753.1.p1|organism=Clytia hemisphaerica_ch_hm2_pilon|type=CDS|length=2796bp|location=Sequence derived from alignment at sc0000098_pilon:115234..120882+ (Clytia hemisphaerica_ch_hm2_pilon)
ATGGCTGAGCAACAACAGAATGTCGTAGACTACAATCAACTGCAAGTTAT
AATACAACAATTAGTTCGCAACGAAATGCAACCAGCTATGCAACAAGCTG
AGAATCGCGCCAAACAGGCACTCGATCAAACAACAGCTAGCACTtcgaca
aatttttcaaaattaaaagctAAATTGGATAAGCAGAGATTAAATGACAA
CATCACATTTACGAAAGCTGGCCACACCGATCAATTCAAACACAATCAAC
AAGTGTTGGAGGTTATTGATGACACCTTAGAAGCCATGGAATCCGCCGAC
GTACAAGCAATGAAAGATCATCTAGAAAAAGAGAGATTTTGGGAATTTGA
TCAATCTACCGAAAGTCTATCTGTCGCCGGAAGAATTCAGGAATTTTCAA
ACTTCTGGGAAAATGAATTGAAAGCGTCGAATTTCGCCCTCGGTATCGTG
CGGGAAGGCTACAAAATACCATTCGAATCGGAACCTCCTCCATTTTTCGC
CAAAAACAACGCATCTAGCTTAAAGAATCGAGAGTTTGTCAAAGATAGTA
TTGAAAAGCTTTTAGAAAACGGTTGTATTGAAAAAGTGACAGAGCCACCT
TATTGCATCAATCCGCTGACCGTTGCAGAAAGGAATTCCAAACTTAGGCT
AGTACTAGATCTCAGGCACGTAAACAAACACATTCAGCCAAACAAATTCT
CATacgaaaatataaaacaggTTTCTGAGATGATTAATAAAGACGATTTT
CTAATTACCTTTGACCTCAAAAGTGGGTATCATCACGTACCAATTAACTT
AAGATTTCAGACTTTTCTAGGATTCGCTTGGGAATTTAAcagcgaaatgc
aattttttgtatttaaagTTTTACCTTTTGGTTTGAATATCGCATGCTTA
GTCTTTACAAAGCTTATGCGTCAATTAGTCAAGAGATGGCGTTCAAAAGG
AATAAAATGTGCTATGTATTTAGACGACGGTATCGTAGGGGACAATTCAT
ACTTCTCGTTAATACAAACAAGGGACCTGATGCTCAACGATATGCGATCC
GCTGGTCTAACagttaatttcgaaaaatctaGCCTTGAAccagagaaaaa
caaaacatggTTAGGATTCATTATAGACACAgaaaacatgaattttgaag
ttccaacaccaaaaatccaaaaagtgctCAAGCTAATTTCAGAGGCGTTA
AATAGTGAATTCTTATCGgcaagaaaaatttccagaatAGCAGGCAATCT
TATTGCTATGGCACCAGCTATCGGTCCGATCGTTTATTTATTCacaaaac
aaatttacaaattcgTCGAATCAAGTTTTTCCTGGGACAAAAAGCGTCTT
TTGAGTCTTAACGTTTTACAAGAACTCGAATTTGGTACAACAAtctagAT
GGCTGAGCAACAACAGAATGTCGTAGACTACAATCAACTGCAAGTTATAA
TACAACAATTAGTTCGCAACGAAATGCAACCAGCTATGCAACAAGCTGAG
AATCGCGCCAAACAGGCACTCGATCAAACAACAGCTAGCACTtcgacaaa
tttttcaaaattaaaagctAAATTGGATAAGCAGAGATTAAATGACAACA
TCACATTTACGAAAGCTGGCCACACCGATCAATTCAAACACAATCAACAA
GTGTTGGAGGTTATTGATGACACCTTAGAAGCCATGGAATCCGCCGACGT
ACAAGCAATGAAAGATCATCTAGAAAAAGAGAGATTTTGGGAATTTGATC
AATCTACCGAAAGTCTATCTGTCGCCGGAAGAATTCAGGAATTTTCAAAC
TTCTGGGAAAATGAATTGAAAGCGTCGAATTTCGCCCTCGGTATCGTGCG
GGAAGGCTACAAAATACCATTCGAATCGGAACCTCCTCCATTTTTCGCCA
AAAACAACGCATCTAGCTTAAAGAATCGAGAGTTTGTCAAAGATAGTATT
GAAAAGCTTTTAGAAAACGGTTGTATTGAAAAAGTGACAGAGCCACCTTA
TTGCATCAATCCGCTGACCGTTGCAGAAAGGAATTCCAAACTTAGGCTAG
TACTAGATCTCAGGCACGTAAACAAACACATTCAGCCAAACAAATTCTCA
TacgaaaatataaaacaggTTTCTGAGATGATTAATAAAGACGATTTTCT
AATTACCTTTGACCTCAAAAGTGGGTATCATCACGTACCAATTAACTTAA
GATTTCAGACTTTTCTAGGATTCGCTTGGGAATTTAAcagcgaaatgcaa
ttttttgtatttaaagTTTTACCTTTTGGTTTGAATATCGCATGCTTAGT
CTTTACAAAGCTTATGCGTCAATTAGTCAAGAGATGGCGTTCAAAAGGAA
TAAAATGTGCTATGTATTTAGACGACGGTATCGTAGGGGACAATTCATAC
TTCTCGTTAATACAAACAAGGGACCTGATGCTCAACGATATGCGATCCGC
TGGTCTAACagttaatttcgaaaaatctaGCCTTGAAccagagaaaaaca
aaacatggTTAGGATTCATTATAGACACAgaaaacatgaattttgaagtt
ccaacaccaaaaatccaaaaagtgctCAAGCTAATTTCAGAGGCGTTAAA
TAGTGAATTCTTATCGgcaagaaaaatttccagaatAGCAGGCAATCTTA
TTGCTATGGCACCAGCTATCGGTCCGATCGTTTATTTATTCacaaaacaa
atttacaaattcgTCGAATCAAGTTTTTCCTGGGACAAAAAGCGTCTTTT
GAGTCTTAACGTTTTACAAGAACTCGAATTTGGTACAACAAtctag
Gene-mRNA-Prot
This mRNA is a part of the following gene feature(s):
The following exon feature(s) are a part of this mRNA:
The following polypeptide feature(s) derives from this mRNA:
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| sc0000098_pilon | genome | sc0000098_pilon:115234..120882 + |
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