MSTRG.12659.1.p1 (mRNA) -

Overview
NameMSTRG.12659.1.p1
Unique NameMSTRG.12659.1.p1
TypemRNA
OrganismClytia hemisphaerica_ch_hm2_pilon (Jellyfish)

Sequence
The following sequences are available for this feature:

mRNA from alignment at sc0000096_pilon:858050..863641-

Legend: exonfive_prime_UTRpolypeptideCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>MSTRG.12659.1.p1 ID=MSTRG.12659.1.p1|Name=MSTRG.12659.1.p1|organism=Clytia hemisphaerica_ch_hm2_pilon|type=mRNA|length=5592bp|location=Sequence derived from alignment at sc0000096_pilon:858050..863641- (Clytia hemisphaerica_ch_hm2_pilon)
CAGTACTAAATAAAAGACAACACAATGTCCTCCTCAGCGTCAGGGCAGAA
TGGACTTCTTGAAGACTTGCTTTCCTACAGCAATTTGGTGCATGCCATTG
CTGGAGCCACAGGAAGTGTTGTCGGAATGTCCACATTCTATCCACTGGAT
ATCGTCAGAACTAGATTCCAAGGTATGTTCATCGATGAATGATTATCTAG
AATATGCACCACTGCAACGACTTGAATTGTGTAATACATATCATGCAACT
TTTTAGATTTAGGTGACCCTTTTCCAGTGTGATACTGACGAATTGATAAA
AAATTTTGATTCTGAAAACTGAAGACTTTTTACATGCTGATTCGTGATCA
TTTTCTAGAAGTATTGATTTCCTGATATGATAGTCTGTAAAGAATGTTTA
ATGTGCACGAGGACAGTTATGATGGAAAAAAAGAAAATGGTGCTCCGGAA
GGAATTCTTGGTTAGAATCGTTCGGCCCAACAACTTAAGCTATGATGGTA
ATGAATTTCTTTCTTTCCACTTATTCAGCGGATGAGAAATTGAAAGCAGT
GGGTCCACTTCAAGCTATGAAGAATTGGCTGATGAAGAAGGGGTGTAAGA
AAAAATCTTTTAACCTACCCCGGTGGGTGGAGGTCCTATAAATTCACCTC
TGTCGTCGTCCGTCCGCCCGTCCTCGTTACCAGCTTTTCTCGAGATTGAA
TCATAGGAATGCATTTGATTTTTGGTACAAATGTGCAAAACGGTGGTGGC
CAAAATGTGACGGAGCCCGATTTTCGAAACAAAAAATTTTGGGCAAATTT
GGGCTTTGTGAAAAATTGGATCATTAAATTTTTTTGATTTTTTGCATGAA
GGTAAAAATCATAGGTAAAAGATGGCTCTAGCAGATTTTTGCAAAAAAAT
TATTTGGCTTAAAAAACGCATGTTTATCTATAAGAATCACTATTAATAAG
CATACATCAATGTTCTTAGTCAAATTACTCAATTTCTTTATGTCTTTGCT
TTTTACAAGATTGGCTCTTTTATTCTTTATGATTTTTTGCACAAGATGCA
TAACTATAAACCCTCGAATGTGACGAGCCCGATTTTCAAAGAAAAAAAAA
TGTTTTTGGGCAAATTTGGGCCCAAAAACGGCTTAAAAAGCGGGTTTTTT
GGACTTTGTGTGAAAAATTGGAATGATTTTTGCATGAAAGTAGGGTAAAA
GATGGGTCAAGCAGATTTTTGTATAAAAACTTTTCAGCTCAAAAAAACGC
ATCTTTATCTATAAGAATCACTATTAATAAGCATACATCAATGTTCTTAG
CCAAATTACTCAATTTTTTGATGAGATCGATGTCTTTTTATGCTCACGAA
GTCTTGAATATGAAAGAATATTTCAAGAGCATGAAATTTTGGTTTCTAAA
AGTTTTTTTTGTAAGAAACAAACGACTAATTTTAATAAATCGTCACTATT
TGTGTTCTGAATGATTGTTTAACGTTCATGCTCACGTAGATATCAATTAT
ATATGTGTTAAACGCATAACCAAGTAGGTCCATAAAAGTATCACTTGTTA
TTTTTTTTTTTAATATTTCAAGAATACTTAAGTTAAAGGAGACAGGTCTA
TCAATCCCATAGTACTGGAGTTTGTAGCTTTTGGAGTCACCTTTAGAACC
TAGGTGTGATATCATATGTCCTAACTCTGAACTAAAAGATGACACATACT
CTCTTAGTTAGATCTTGTTGCAACTTTCAACCAAAAAATCATTTCCACCC
CTAATTATCTGCAAGTGAAAAAAAAAAAGGATTTCACCTGAACTAAATTC
TCCAATTTTTTTTCGAATGCGAAATTTTTATTCTGCTAGCTGAATTATTT
CCAAGCCTCTTTTTTAGAATAATTCATTCTTTTTCTCAGGGAAGCGTTGT
ATAGAGGACTGGGTCCCGTGTTGACCAGTTTGTATTGCTCCAACTTTGTT
TACTTCTATTCGTTCAATGGCATGAAAATGATTGCCAACTCGAACGGGCT
GAAAGCATCTGTTGGAAGGGATTTGGTGCTAGGCTACGTAGCAGGTTCGT
AGAAAATTCGGCTATAACGATTCCAAATTAAGTTTCGAGGGTCGTATAAT
AATTGCAAGCGGTTACTTTTACAGAAGAATCCGTTTTCAACAGAAATAAC
AGAAAACAGAAAGAATATTTAAATTTTAAATAGTCTATTACGAAATGGAA
TGTCAGACTCAAATGGTGTGGGCCTTTTTCTGTATGTAAAATGTGATTCC
CTTACGCTATAACTCATGTTTGCTTGGATCCTTAACTTTGAGATAACTCT
GACCCTTTCTTGGCTAGGTTGTATCAATGCTATGATGACCACTCCATTGT
GGGTGACAAACACTCGATTGAAGTTGCAAGGCGTATTGAAAGACGAAGCA
GGAGAACAACCTGAGAAAAAATTCAACGGATTGATCGGTAATTCTAGATA
TTACCTTCTTATCTTTGTTGGGCGTCTTATCAGATTACCTTATTACACAA
ATATTACTAGGCAAGTATTCGACGGCCTTGAAATTTGCGCGATCTGAAAT
TAACACGAATTTTTCTGCTTTTTCAAAGAAACAGCGACTGGTTTTGATTA
AGGGGGTTTTTATTGACATGAAATATTTCAATTCGTGTTGATAAAATGAC
TATAGAGTGTAATTATATGTAAGATGGATTTTAGTTTCTTTTTGCACATC
ATATTTACCAGTGTGGTCTAATTATTAACGTATTTTTTATTTTTCTACAG
ATGGTATGAGAAAGATAGCAAAAGAGGAGGGCGTACACGCCTTGTGGAAT
GGCGTTGAGGCGTCATTTATTTTGTCAGGAAACCCGGCCATTCATTTTAT
GGTTTACGAAGCTTTGAAAAGAGTTGTGTTGAAAGCTAGAGGAGCACGAG
GCAAAACAGCTGTAAGTTCTTCTCTGTAAATTTCTATCTCCTTAGCAACT
GTTTGCGAAAGTTTCTTCAAAGATGTCCCACATTAGATATAATTGCGGTG
GTCGGTTTTACATCTCACATTATCTTGTACAGGGATTCTTGCCAACTTTC
ATTCCATTTCAATCTTCCTTATTTTTTCTTTATTTGAAAAAATGACAAGT
GCATTACCGAACATATATTACATAACACTACTAACATAGATATGATAGTC
CCTCCCCCGCTGGGAACTACCTTATTACCCGAATATTACTAGTCATTTTA
TTAACACGAATTGAAAAACTTAGTGTTAATAAAAATCCTCTTAATTAAAA
CCAGCCTGGCGGTGTCCCTTGAAAAAGCATAAAATTCGTGTATTAATTTT
TGCGTGTTAATTTCAAGGTCGTTAATACTTTTGCCTTGTAATATTCGTGT
AAGATAAAGTGGTATCTCCAGAGGTACTAGACTATGTTAAAAGAAACAAA
AATAATACTGGAAAAAATAATGTAGGGAGCTATGATTGTTGAGTCAAGAC
TAGAACAAAGCTTTCCTTTCTTTCACAGACGTTATCATCGTTCGAATCAT
TCGTTATTGGTGGGTTTGCGAAAGCAGTGGCTACCGTCATCACTTACCCC
TTACAATTGATTCAATGTCGTTTGAGGGTAAGTTTCTCTTCGTCTATCAT
TTTGGAAAACTCGACCTGTCTGCTAATTAGTCAAGGGAAAATGGCCTGAA
AACCCACCTTGGACGGAACTTTGTACATTAGGGAATGAAGCCCAAAATTC
GGTAAAATATGAAAGGTGAAAATGGGATGGTTCGAGATGATTTAATTAAT
TATTCAGTAAAACCCAGACGTTGAATCGGCAGAAAATTCTGTACATACAA
CTCTTCATTTATTTTTCTTACTTTGATTTTTGTAGGCTAAAAGGAGAAGT
AACGACGGGTCTGGATCAATGTCAAGTGTATTGGAAGAGGTTTTAAGGTA
AGTCTTTTTTATATTCTGCATTTTTAATAAAGAAATGTGTGCAATCTGTA
TCATTGTCAATATTTTCCGAGAATCTGACAAACTCGAGCTCCCATCGTGA
CACGTCGAATTCTGGGATGTTATTCATTATTTTGAATTTTTGGACCTACC
CCGGTGGAAGTCCTATAAATTAACCTGTGTTTGTTCGTTCGTCCGTTCGT
CCGTTCGTCCGTTCGTCCGTCCGTCCGTTCGTTCGTTCGTTCGTTCGTCT
GTTAGCAACTTTTCTCAGGGTTGAATCATAGGAATCTTTCGATTTTTGGT
ACAAAGGTGCAAAATGGTGGTGGCCAAAATGTGACGGAGCCCGATTTTCG
AAAAATAATTTTTTTGGCCAAATTTGTGCCAAAAAACGGCAAAAAAACGG
GTTTTTTGGACTTCGTGATATATTGGATCATTGTTTTTTTCTGATTTTTT
GCATGAAAGTATGTAAAAGGTGGCTCAAGCAGATTTTGGTAAAAAGAAGA
TTTTTTCGGCTCAAAAAACGCATCTTTATCTATAAGAATCACTATTAATA
AGCATACATCAATGTTCTTAGCCGAATTACTCAAGATGTTTTTTTTTGCT
CACGAAGTCTTGAATATGAAAGAATATTTCAAGAGCATGAAATTTTGGTT
TCTAAACGTTTTTTTATAAGAAACAAACGACTAATTTAAATAGATCGTCA
CTATTTGTGTTCTGAATGATTGTTTAATGGTCACGTCACGTAGATATCAA
TTATAAATGTGTTAAATGCATAACCAGGTAGGTCCATAAAAGTATCACTT
GTTTTCTCTTCTTTTTTTGCTGCAGGACATCTGGGTTCAACGGCTTATAC
AAAGGTATGGAATCGAAATTATACCAAACTGTCCTCACTGCATCTCTCAT
GTTTTTGTCATACGAAAAAATTATGGCTTTGATTTATACTGTCTTCAAAG
TTCACCAAAAATCAAAGAAGCCTTGATACCTTTTGGACCACCATAGAGAC
GGATTGGGAATATGGATTTAGAACACGTGCGGGAAAATGATTTCAGGCCC
GCACAACATTTACATACATTGAACATTAGTAGGTATCAAATTTTTGGATT
TCTACCCATGCATTACATTAGATAACATGATTCAAATTATACCATGATTC
AAATTAATTTACTCTGATTTATTGCCGATTGAGGTATTTGACTGGACTAT
TAGACAATATACCTGTATAAATCTCAAAAGAAACTATTCAAATCAAACTC
AGACTGCATATGGGACTGCTTGAAAAATGGATCTTCCAAATAGACTCGAT
AATTTAGAAATTTTTATATAAAAAATTACAATTTACCAAACGAGATTATA
TTTTTTGTTTTGTTTTAGAATTTTATTTATCGATTAAAATGAGGAATTCT
TGGGAAATAATACTTTTTGAACAAAATAACAAATTAAAGTGTGTTTTTAT
TCTCATTTAGCTTACGATCAACTTTCGTTCACAACATTTTTTAAAAGTAC
AACTAAAACCTGAAAGAAATCATATTATCTGCCTAGCTCTAGCACTATTC
AAGTCCAATTTGAATTTAGAACGAGAAATATCATTCTCTGGTGGTGACAC
TTTCCCAATTTTCCAACACAGTGAGTGTGTTGGCAAACATTTGAAACATT
GTTCTATTCACTTCTAACGGTCTTCATTAGCAGCATCATTTT

Coding sequence (CDS) from alignment at sc0000096_pilon:858050..863641-

>MSTRG.12659.1.p1 ID=MSTRG.12659.1.p1|Name=MSTRG.12659.1.p1|organism=Clytia hemisphaerica_ch_hm2_pilon|type=CDS|length=3996bp|location=Sequence derived from alignment at sc0000096_pilon:858050..863641- (Clytia hemisphaerica_ch_hm2_pilon)
GACATCTGGGTTCAACGGCTTATACAAAGGTATGGAATCGAAATTATACC
AAACTGTCCTCACTGCATCTCTCATGTTTTTGTCATACGAAAAAATTATG
GCTTTGATTTATACTGTCTTCAAAGTTCACCAAAAATCAAAGAAGCCTTG
AGCTAAAAGGAGAAGTAACGACGGGTCTGGATCAATGTCAAGTGTATTGG
AAGAGGTTTTAAGACGTTATCATCGTTCGAATCATTCGTTATTGGTGGGT
TTGCGAAAGCAGTGGCTACCGTCATCACTTACCCCTTACAATTGATTCAA
TGTCGTTTGAGGATGGTATGAGAAAGATAGCAAAAGAGGAGGGCGTACAC
GCCTTGTGGAATGGCGTTGAGGCGTCATTTATTTTGTCAGGAAACCCGGC
CATTCATTTTATGGTTTACGAAGCTTTGAAAAGAGTTGTGTTGAAAGCTA
GAGGAGCACGAGGCAAAACAGCTGTTGTATCAATGCTATGATGACCACTC
CATTGTGGGTGACAAACACTCGATTGAAGTTGCAAGGCGTATTGAAAGAC
GAAGCAGGAGAACAACCTGAGAAAAAATTCAACGGATTGATCGATGAAAA
TGATTGCCAACTCGAACGGGCTGAAAGCATCTGTTGGAAGGGATTTGGTG
CTAGGCTACGTAGCAGGACATCTGGGTTCAACGGCTTATACAAAGGTATG
GAATCGAAATTATACCAAACTGTCCTCACTGCATCTCTCATGTTTTTGTC
ATACGAAAAAATTATGGCTTTGATTTATACTGTCTTCAAAGTTCACCAAA
AATCAAAGAAGCCTTGAGCTAAAAGGAGAAGTAACGACGGGTCTGGATCA
ATGTCAAGTGTATTGGAAGAGGTTTTAAGACGTTATCATCGTTCGAATCA
TTCGTTATTGGTGGGTTTGCGAAAGCAGTGGCTACCGTCATCACTTACCC
CTTACAATTGATTCAATGTCGTTTGAGGATGGTATGAGAAAGATAGCAAA
AGAGGAGGGCGTACACGCCTTGTGGAATGGCGTTGAGGCGTCATTTATTT
TGTCAGGAAACCCGGCCATTCATTTTATGGTTTACGAAGCTTTGAAAAGA
GTTGTGTTGAAAGCTAGAGGAGCACGAGGCAAAACAGCTGTTGTATCAAT
GCTATGATGACCACTCCATTGTGGGTGACAAACACTCGATTGAAGTTGCA
AGGCGTATTGAAAGACGAAGCAGGAGAACAACCTGAGAAAAAATTCAACG
GATTGATCGATGAAAATGATTGCCAACTCGAACGGGCTGAAAGCATCTGT
TGGAAGGGATTTGGTGCTAGGCTACGTAGCAGGACATCTGGGTTCAACGG
CTTATACAAAGGTATGGAATCGAAATTATACCAAACTGTCCTCACTGCAT
CTCTCATGTTTTTGTCATACGAAAAAATTATGGCTTTGATTTATACTGTC
TTCAAAGTTCACCAAAAATCAAAGAAGCCTTGAGCTAAAAGGAGAAGTAA
CGACGGGTCTGGATCAATGTCAAGTGTATTGGAAGAGGTTTTAAGACGTT
ATCATCGTTCGAATCATTCGTTATTGGTGGGTTTGCGAAAGCAGTGGCTA
CCGTCATCACTTACCCCTTACAATTGATTCAATGTCGTTTGAGGATGGTA
TGAGAAAGATAGCAAAAGAGGAGGGCGTACACGCCTTGTGGAATGGCGTT
GAGGCGTCATTTATTTTGTCAGGAAACCCGGCCATTCATTTTATGGTTTA
CGAAGCTTTGAAAAGAGTTGTGTTGAAAGCTAGAGGAGCACGAGGCAAAA
CAGCTGTTGTATCAATGCTATGATGACCACTCCATTGTGGGTGACAAACA
CTCGATTGAAGTTGCAAGGCGTATTGAAAGACGAAGCAGGAGAACAACCT
GAGAAAAAATTCAACGGATTGATCGATGAAAATGATTGCCAACTCGAACG
GGCTGAAAGCATCTGTTGGAAGGGATTTGGTGCTAGGCTACGTAGCAGGA
CATCTGGGTTCAACGGCTTATACAAAGGTATGGAATCGAAATTATACCAA
ACTGTCCTCACTGCATCTCTCATGTTTTTGTCATACGAAAAAATTATGGC
TTTGATTTATACTGTCTTCAAAGTTCACCAAAAATCAAAGAAGCCTTGAG
CTAAAAGGAGAAGTAACGACGGGTCTGGATCAATGTCAAGTGTATTGGAA
GAGGTTTTAAGACGTTATCATCGTTCGAATCATTCGTTATTGGTGGGTTT
GCGAAAGCAGTGGCTACCGTCATCACTTACCCCTTACAATTGATTCAATG
TCGTTTGAGGATGGTATGAGAAAGATAGCAAAAGAGGAGGGCGTACACGC
CTTGTGGAATGGCGTTGAGGCGTCATTTATTTTGTCAGGAAACCCGGCCA
TTCATTTTATGGTTTACGAAGCTTTGAAAAGAGTTGTGTTGAAAGCTAGA
GGAGCACGAGGCAAAACAGCTGTTGTATCAATGCTATGATGACCACTCCA
TTGTGGGTGACAAACACTCGATTGAAGTTGCAAGGCGTATTGAAAGACGA
AGCAGGAGAACAACCTGAGAAAAAATTCAACGGATTGATCGATGAAAATG
ATTGCCAACTCGAACGGGCTGAAAGCATCTGTTGGAAGGGATTTGGTGCT
AGGCTACGTAGCAGGACATCTGGGTTCAACGGCTTATACAAAGGTATGGA
ATCGAAATTATACCAAACTGTCCTCACTGCATCTCTCATGTTTTTGTCAT
ACGAAAAAATTATGGCTTTGATTTATACTGTCTTCAAAGTTCACCAAAAA
TCAAAGAAGCCTTGAGCTAAAAGGAGAAGTAACGACGGGTCTGGATCAAT
GTCAAGTGTATTGGAAGAGGTTTTAAGACGTTATCATCGTTCGAATCATT
CGTTATTGGTGGGTTTGCGAAAGCAGTGGCTACCGTCATCACTTACCCCT
TACAATTGATTCAATGTCGTTTGAGGATGGTATGAGAAAGATAGCAAAAG
AGGAGGGCGTACACGCCTTGTGGAATGGCGTTGAGGCGTCATTTATTTTG
TCAGGAAACCCGGCCATTCATTTTATGGTTTACGAAGCTTTGAAAAGAGT
TGTGTTGAAAGCTAGAGGAGCACGAGGCAAAACAGCTGTTGTATCAATGC
TATGATGACCACTCCATTGTGGGTGACAAACACTCGATTGAAGTTGCAAG
GCGTATTGAAAGACGAAGCAGGAGAACAACCTGAGAAAAAATTCAACGGA
TTGATCGATGAAAATGATTGCCAACTCGAACGGGCTGAAAGCATCTGTTG
GAAGGGATTTGGTGCTAGGCTACGTAGCAGGACATCTGGGTTCAACGGCT
TATACAAAGGTATGGAATCGAAATTATACCAAACTGTCCTCACTGCATCT
CTCATGTTTTTGTCATACGAAAAAATTATGGCTTTGATTTATACTGTCTT
CAAAGTTCACCAAAAATCAAAGAAGCCTTGAGCTAAAAGGAGAAGTAACG
ACGGGTCTGGATCAATGTCAAGTGTATTGGAAGAGGTTTTAAGACGTTAT
CATCGTTCGAATCATTCGTTATTGGTGGGTTTGCGAAAGCAGTGGCTACC
GTCATCACTTACCCCTTACAATTGATTCAATGTCGTTTGAGGATGGTATG
AGAAAGATAGCAAAAGAGGAGGGCGTACACGCCTTGTGGAATGGCGTTGA
GGCGTCATTTATTTTGTCAGGAAACCCGGCCATTCATTTTATGGTTTACG
AAGCTTTGAAAAGAGTTGTGTTGAAAGCTAGAGGAGCACGAGGCAAAACA
GCTGTTGTATCAATGCTATGATGACCACTCCATTGTGGGTGACAAACACT
CGATTGAAGTTGCAAGGCGTATTGAAAGACGAAGCAGGAGAACAACCTGA
GAAAAAATTCAACGGATTGATCGATGAAAATGATTGCCAACTCGAACGGG
CTGAAAGCATCTGTTGGAAGGGATTTGGTGCTAGGCTACGTAGCAG
Gene-mRNA-Prot
This mRNA is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
MSTRG.12659MSTRG.12659Clytia hemisphaerica_ch_hm2_pilongene
The following polypeptide feature(s) derives from this mRNA:
Feature NameUnique NameSpeciesType
MSTRG.12659.1.p1MSTRG.12659.1.p1-proteinClytia hemisphaerica_ch_hm2_pilonpolypeptide
The following exon feature(s) are a part of this mRNA:
Feature NameUnique NameSpeciesType
MSTRG.12659.1.p1.exon8MSTRG.12659.1.p1.exon8Clytia hemisphaerica_ch_hm2_pilonexon
MSTRG.12659.1.p1.exon7MSTRG.12659.1.p1.exon7Clytia hemisphaerica_ch_hm2_pilonexon
MSTRG.12659.1.p1.exon6MSTRG.12659.1.p1.exon6Clytia hemisphaerica_ch_hm2_pilonexon
MSTRG.12659.1.p1.exon5MSTRG.12659.1.p1.exon5Clytia hemisphaerica_ch_hm2_pilonexon
MSTRG.12659.1.p1.exon4MSTRG.12659.1.p1.exon4Clytia hemisphaerica_ch_hm2_pilonexon
MSTRG.12659.1.p1.exon3MSTRG.12659.1.p1.exon3Clytia hemisphaerica_ch_hm2_pilonexon
MSTRG.12659.1.p1.exon2MSTRG.12659.1.p1.exon2Clytia hemisphaerica_ch_hm2_pilonexon
MSTRG.12659.1.p1.exon1MSTRG.12659.1.p1.exon1Clytia hemisphaerica_ch_hm2_pilonexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0000096_pilongenomesc0000096_pilon:858050..863641 -