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Sequence
The following sequences are available for this feature:
mRNA from alignment at sc0000096_pilon:476717..482134+ Legend: five_prime_UTRexonpolypeptideCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below. >MSTRG.12630.1.p1 ID=MSTRG.12630.1.p1|Name=MSTRG.12630.1.p1|organism=Clytia hemisphaerica_ch_hm2_pilon|type=mRNA|length=5418bp|location=Sequence derived from alignment at sc0000096_pilon:476717..482134+ (Clytia hemisphaerica_ch_hm2_pilon)
TTTGAATCTTGTGCTGGCGACAAGTACACAAACTGACTAACAGCTGATCG
AAAACGTTAATTTggattttgagatatttttttcaGCAGGACTGATCGAT
TGATAAATATAGATTTTGATATTCAGATCATTTGAGTTTTGATACACAAA
GATGAAAGGCTTAATGAGGAAATTATCGAAAGGTGAGCtttttttGGAAT
TCTTTTGTTATCAATTCATTTTGAAAAGAATGTCGTCCACCAACCCTTGG
AGCTTTGTATTCATTCCACTTGGTGAAATTCAAAACCGTTCATTACAGCT
TGTGGAGAAGTTAGATTGGTCCAACAGAGTACCATTAAAACATTCGTTTT
AGAGCTTTTACTAAAAATGTCAGCCATTCAAAACttttatgataaaatat
tgTAACCTTCCAATCTGCTGGGCTTTTGGTTCGGATCTTCAATGGGTCTT
TGCGTACAACATACAATATTCAAGTATTATAGAGGTGCCACGTTATAACC
ATGAATATAGGAAGTGTAAAGAAAAGTCCTATATAGCATCTTTTTTCAGG
AAAGGTTGATGACTGCTAAGGTTTTCCTGCGAGAGGAAGGGATTTTCAAA
CAAAGTGTGGTCGTTTGGTAGAACAGTGACAAACAAGCCTTTTTAAAAGA
AGCAGTAAATTTTGATTGAGGCATGGCTGTTCTTTTTTCGCGATTTTCAG
GCCTCATTTATGCCCACGTTATCAATAATTGGCTTTCAAAGGCGtaaaat
cagcatttttttcTAGCTATTCCTGAAATCTGAGGCttggattgttctta
atttgttctaaaGTTTTTGACGAAATcgagcctcgtgttcttataaaatt
gttcgtagaaaaaaagtgtttatacTTGGTTAGGAAGCCGTGTATGACAT
AACACTCCTCTTCCCTCTTTTAAAGTATACATGGAAAAATGCTAATTAAA
ACGCCCCCAATATTTTGTATGTAACGTTAACAATTtccaaaaaagaattt
gaaaaactgGAGCAGTCTATTGatggttgaataaaaaaacaatcaaaatg
ataGACTTGGcgattttaataaatttttgcatttttgggcTTCATTTGAT
GGTGCAAGGAGCTTGCTAACTATAGGCAATAGAAACTCTCGTGTCCGTGT
TCAATCGTTCGGTGAGCCTGCGTTGTTATTCTTTTAGAAATGACAAAtac
aactcaaaattatagtcatGAATAGGAACGAAACCACAATTTCCTATAAT
TTCTTTTATCTGTGACGATTGATTTGAAAGACCACTAAAGGTCACACTGT
TCACAAGGAAGAAAACAGAATCACACCAACCAACCACCAGGCAGGAGACG
GAAAAGCTAATAAAACAAACGATCAAAAGTACataattgaatttaatttt
ccCTTACGTATATCGTCATCATTCTATTGGATTCATTAATAATTTCTAAT
GAGATCCACACACATTATTGATGAGATAAATTAGATTAGGATACATGGCA
ATCCCGTCCGTTCTTGCAACCACCAAATGGTTTTGAATGTTTCCTCACAC
TATGACGATGAATAGGAACTCCGTATCCAGTTGTTCTTTCCATTGTTAAG
GAAGAATAAGAAATATTTCACATCTTCGTGTCACCTCGTCATCACTGGGT
GGAGTTTTCAACAAGGTCTCTATTTGATTGGATATCACAGCTATGATCAA
TTAGGGACTATTGTTTGTTGTATAAACTTCAGCATAGAAAAGATGTATCC
ATTTCGCTGTTGGAGTTTTTTACAACGATACATGTAGCTCCATTGCTCTT
TGTCTGGTACGCAATAAACAATTCATTAACCATAAATCTTCGAAAAAGTT
TCAAGCTGATAATCATCGATTCTAGAGCTTTGATAATTATTGTGGTATTT
CACAGCTTCTTTTTCGTTTGTCAATCACCTATAATCCCATCAAAACATGA
ATTAAGTCCATCATATCTAATTAAGAATGATTTGATTAGTCTCTGTTTAA
TCATCCATGTCCAGGTATATAAAGGAGGGCTGTGCACTACTTCATTAGTA
GTGAGTACTGATGCATTTGGTTCAGGACTCGAATTTGACTTTGTATACTT
GATTTACTCTACTGTATTTTTCATGTCATGCAAAGTATATGGAATTCCAC
TAGTAGAAAGTTACGAAGAGGATTCTATTGTAAGTGTTTGTATTGAAAGG
AGCACATAGTACTCATACTCTCGTATAGAAGTAATTACTTCACTTTGACG
GTGAAGGTTTTTTCATAATTAGGTAGTTAATGCTctgcaattaagagaag
gatcaaggataAATGAAACAATCCAGATAGAAAAAGGGGCGCCCAACCCT
TCCTTCTATCGAAtaaggagccttcgggtcgcctacGACTGCCGATAAAG
TCTTAATTACTTTAAATGGTACAAGACCGTTCAACCATTACTTAAATTGT
CAGGGTTTTCTTAAGTAATtccagtcaactctctctaattcgaacatcTA
TTATTCTAATcttttttgtaattcgaactaaaatattgtgGTCCTCAGCT
AGAAAGTGGTTGAAAttactctctttaattcgaatttttctctatttcga
aTGATATGTTTGGTCCCGTAACAAGTGATACTGATAAGTGAAGCCGTTGA
AggacatacactttttttataagaaccagtaaaattgtTCTGAGGCTCGG
TTGTTCTTATTTCTAtgacactttgagcctcaaattgttcttctcctgtt
cttatttaaagGGTGAAATTGGAGGTATTTTAAACgctatacccaatttt
tactactctaatccctaaattgcttgaaattgagctATTTTGGGCTCAGA
ATtgctcttaaattgttcttattttttgtcgatttcgaccttcattgttc
ttataaaattgtttttatataaaaaaaagtgtaactgAGTTGGAGAGGAA
CACTTTTTGCAACGTCATCCAATCATAGATTTTtagcaaaacaacaaaat
atccTTATTAAGGTGTAAACATAACAATGATCTTACAGGATGGTAGCGat
caaaaagtacaaaatgacGGATTTTGATATCTCGATCGTCAATTACCGGT
CTATTTGTCCACTGTACGCCTTTCTTCCTCTAAATTGAAAAGACCACTAA
ATGGCAGATCATTTAACGAAAGTAAGGGAGGCGGGTGAATAATATACTTA
GGATCGACTGGTTTTATGTAGTCggaaatcggaaaatttattTAAGAACT
CAGTGTGAAGAAAATTTAGTATTGTAATGTCCTGAATGTTGCGGTGTGAA
CCTTATAAATGATTTTGCATATTTGGTTCCACCTTCGAAACAATAAAGGA
ATTCTCTCAGGTTTATGTCCTGAATGTCTTGGCGTAAACCTTTTTGCATA
TTTATTTTAAACTTCGAGGCAATAAAGAATTTCTCTCGGGCTTTGCAAGC
CAAATGCCACCGTTTTGGGTAGAATTAAGATTCCATTGGCCCTGTTTTTG
CGGGATGGACGAGAGATGGTAAAGCGTTGTTTGTTGCTTGGCAGTGGAAG
TTCAGTCCGGGAAATGGGATCTTATCCGAAACGACATTAGGTGGACACAA
CAAACATAAATTAATCGAacagaataaaaacattttcgaaGATAAAGGAG
CGGATATTACCGGATCGGATGTTTTTTGTCTCGCTTCAAACGAAATCAtc
aatcaaattaaattgaagACAGTCCGAACAGAAGATTACATTTAAGCGGA
CCTGTCATatgaaaaatacattttcaacTTAAAAATCGTGATTTCAGTTT
TGTTGAACATTTATTAATTAAAGGGTTGGGTTGAAGCTGGTCATTGAAGG
TTCTATTTTTACATttaagtgttcctgtttcatatcagacacatttttca
tatcaggacagtgtctgcctattgttatattacgCTGATATAAGCataag
aatgtttttcttttcctctttctgaccaatcttgctccgcctccgtgtca
atccaatgtgaaaaagcttgtgaatagaaattgaaaagtaagcaaacgat
atcactctatatagcttgttcttataaaaaacgtgtaaccatGTTCTTGT
TTCTTATATCTTTCAGACATGAAAGCATCCAAGGAAATCATTGTTTGCGT
GGAAGAGAAAGACGGCAAAGAAACGTTAACCTTGAAACGAAGCATCTCTC
TCGAATCCCTCACCAAGATCCTCTCCAAAAGCCAAGAAAGTTTAAAAgca
ggaaaagaaaagaaaccacAAGTAGAACCGAAGCGTAAATTATCCGGACT
TTCTCTACGTATCCGTAAAATGAGCGCCCAGACCGAATTAACGAGACGTG
GCCGTATCTCGAGTAATAATGACGGATCTCAGACAGAACTACGACGTGGA
CGTAATTCAAGTTTTGTCGAAGGTCGGCAACGTAAAGTCAGCATCCAGCC
CGACTTTAACATCGGAAACGTCGTTATCCCAGCCGAGAAACGAGTTCGTA
AAGGAAGCCTTCAGCCCAACATGTTGACTATGGGACGACGTAACAGCACA
CTTTTGAAAAAGGACCCTAAAGCACGAAAAATGAGCGTGCCAGCTAACAT
GAAATTTTCAACAGAACGCGTGCGTGTACGGCGTGTCAGTTTCGTGAATC
AGAACACGGGTGAAACATTTCAGATGAACAAGAAATAATCACGTTGTTTA
GAGTAATAtcacgaaaatctttttttctcgtATACAACAGACGAATGAAT
AACAAGGAGAATGAGGCAAATGGATGCATGCAGCTAAGCCATAGAAGCAA
GTAATGTTGCTTTCATCCGCTATGAGTAGAGACCAATATAAGAGAGAACt
ggcaaaataaataaacgacACTTACTTTCACTTTATCCGTATATAGTTCT
TCAAAAACTCCTCAATTTCAATGGCATTTCTTCTTTGGTCAAATTAAATG
GACCTGAAACGTTAAAACAATATCTGATATTAAGCAGAATCAAGTTTGCT
GCTGGGAAAGCAAACAAgattgtttttcatgtttttagaGAAAGCGGTTT
TTGATGCACTATTGATGTTTTTAacgaatattattttttttacaaaaata
ttttttggatattGTACATAGAATACAATTTTTATGCATTAAATAAGTAA
CAAAATTCTTATGTATAATTCGATATATAGGATATAGAGCGGTTACTCAA
TAAGGGCGACCtataaaatatttcacttttttataaaaaatatgtatata
tcttgaaagataaaaaacattGCAGATAATTACACACCTATAGAATTctt
caggcccggcggaagcggggagactagggagacttcagcctccccacttt
tacggttgttccgccgggcctgttcTTCCCacagaaattttactttagtc
ATTGGTATACTAGAGAAA Coding sequence (CDS) from alignment at sc0000096_pilon:476717..482134+ >MSTRG.12630.1.p1 ID=MSTRG.12630.1.p1|Name=MSTRG.12630.1.p1|organism=Clytia hemisphaerica_ch_hm2_pilon|type=CDS|length=1206bp|location=Sequence derived from alignment at sc0000096_pilon:476717..482134+ (Clytia hemisphaerica_ch_hm2_pilon)
ATGAAAGGCTTAATGAGGAAATTATCGAAAGACATGAAAGCATCCAAGGA
AATCATTGTTTGCGTGGAAGAGAAAGACGGCAAAGAAACGTTAACCTTGA
AACGAAGCATCTCTCTCGAATCCCTCACCAAGATCCTCTCCAAAAGCCAA
GAAAGTTTAAAAgcaggaaaagaaaagaaaccacAAGTAGAACCGAAGCG
TAAATTATCCGGACTTTCTCTACGTATCCGTAAAATGAGCGCCCAGACCG
AATTAACGAGACGTGGCCGTATCTCGAGTAATAATGACGGATCTCAGACA
GAACTACGACGTGGACGTAATTCAAGTTTTGTCGAAGGTCGGCAACGTAA
AGTCAGCATCCAGCCCGACTTTAACATCGGAAACGTCGTTATCCCAGCCG
AGAAACGAGTTCGTAAAGGAAGCCTTCAGCCCAACATGTTGACTATGGGA
CGACGTAACAGCACACTTTTGAAAAAGGACCCTAAAGCACGAAAAATGAG
CGTGCCAGCTAACATGAAATTTTCAACAGAACGCGTGCGTGTACGGCGTG
TCAGTTTCGTGAATCAGAACACGGGTGAAACATTTCAGATGAACAAGAAA
TAAATGAAAGGCTTAATGAGGAAATTATCGAAAGACATGAAAGCATCCAA
GGAAATCATTGTTTGCGTGGAAGAGAAAGACGGCAAAGAAACGTTAACCT
TGAAACGAAGCATCTCTCTCGAATCCCTCACCAAGATCCTCTCCAAAAGC
CAAGAAAGTTTAAAAgcaggaaaagaaaagaaaccacAAGTAGAACCGAA
GCGTAAATTATCCGGACTTTCTCTACGTATCCGTAAAATGAGCGCCCAGA
CCGAATTAACGAGACGTGGCCGTATCTCGAGTAATAATGACGGATCTCAG
ACAGAACTACGACGTGGACGTAATTCAAGTTTTGTCGAAGGTCGGCAACG
TAAAGTCAGCATCCAGCCCGACTTTAACATCGGAAACGTCGTTATCCCAG
CCGAGAAACGAGTTCGTAAAGGAAGCCTTCAGCCCAACATGTTGACTATG
GGACGACGTAACAGCACACTTTTGAAAAAGGACCCTAAAGCACGAAAAAT
GAGCGTGCCAGCTAACATGAAATTTTCAACAGAACGCGTGCGTGTACGGC
GTGTCAGTTTCGTGAATCAGAACACGGGTGAAACATTTCAGATGAACAAG
AAATAA
Gene-mRNA-Prot
This mRNA is a part of the following gene feature(s):
The following exon feature(s) are a part of this mRNA:
The following polypeptide feature(s) derives from this mRNA:
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
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| sc0000096_pilon | genome | sc0000096_pilon:476717..482134 + |
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