MSTRG.12584.1.p1 (mRNA) -

Overview
NameMSTRG.12584.1.p1
Unique NameMSTRG.12584.1.p1
TypemRNA
OrganismClytia hemisphaerica_ch_hm2_pilon (Jellyfish)

Sequence
The following sequences are available for this feature:

mRNA from alignment at sc0000095_pilon:1001830..1004388+

Legend: five_prime_UTRexonpolypeptideCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>MSTRG.12584.1.p1 ID=MSTRG.12584.1.p1|Name=MSTRG.12584.1.p1|organism=Clytia hemisphaerica_ch_hm2_pilon|type=mRNA|length=2559bp|location=Sequence derived from alignment at sc0000095_pilon:1001830..1004388+ (Clytia hemisphaerica_ch_hm2_pilon)
AGCACGGCATGGAAGGTCATTTGTGACGGACAAAATATGAATATCAAAAA
GGGATTTATAAAAATTCACTACTCAAGAAAATTATTTACTCAGTTTACTT
CGAGCAGAAGAGACATAATTGGATTGAAATGAACTTCGTACACGTTTTTG
TTCTTTTGGTGGTTTTCGTCAACAAAATCGAATCAAAATGTGACGCACTC
ACTCGATCAGTTAACGGTCaatacaattcaaaattcattttaaatttgGG
AGATGGATTTCGTTCAACAGATTTAACGATCAAGTTCGTTGACGTTGTAC
AGAATGTTGATGCTTCGCATAGTAAAACACCGAACGCAAAGAGTATTATA
GATGGagggaaaactttcaaaataacaGGTGGCTTCTCACAAAGAAGAAT
TGAAGTTCACGTCAAGGGTTACAACACTAAACTTTCATCAATCGAAGCAA
CAGGGATCGACTGCAACTTTGAAGGAAAACAATGTAAATCAAGTGACTTT
GGTGCAGCAAAATGTGAAAGAATGCTTCGAGAAAGGACTATTGAGCAAGG
AAAGATTCAAAGTGGAATTTGGTTCACAAGCGGAAATGATTTTCGCTTTG
GTGCAAAATTGACGGTAAGTTAGTGTAAAAAATCAACTAAAACCTCGCCA
GCATTGATATAACATCAATAGTTTCAAACGAAACCAAAATccttattttc
acttttaatttttagtttggTTTTGAAACAGCTGTCCCAGACTTTCACGC
ATGGCAAGGGATCAACAGACTCTATGAAAAACCACaatgtcaaaatattt
tccactTTCAATCACAACAAGGAATGGTTGCTGGAGTATCTCGACTTTCT
GTCAAATTTCATTACTCGCCACCTGGCAAATTAGTTTACATCGCTTTTGG
GGATGTAGAATGTCTACAAGTGTGTGGAACAAAACCAGACTGTCTTCTTC
CAACAACGCCTACAACAACAACCACTACGACCACAACAACTACAGAAGAA
CCCAAAGTAACCACAGAACCCGAAGTAACCACGGAAGAACCCGAAGTAAC
AACGGGAGAACCTGAAGTAACCACAGAACAACCTGAGGCCACCACAGAAC
AACCCGAGGCCACCACAGAACAACCCGAAGTAGCCACAGAACAACCCGAA
GTGATCACGGAACAACCCGAAGTAACAACGGAACAACCCGAAGTAACAAC
GGAACAACCCGAAGTCACCACGGAAGAACCCGAAGTAACCACGGAACAAC
CCGAAGTAACAACGGAACAACCCGAAGTAACAACGGGAGAACCCGAAGTA
ACCACAGAACAACCTGAGGCCACCACAGAACAACCCGAGGCCACCACAGA
ACAACCCGAAGTAGCCACAGAACAACCCGAAGTAACCACGGAAAAACCCG
AAGTCACAACGGAAGAACCCGAGGTAACTACGGAAGAACCCGAGCAAGCC
ACGGAATCAACACCTACGACAACCACTCGAAGAAGACCTATCATTGCCGT
CTTAGAGGATTTCGAAGtgaattaaaagaaaaactgttttttattatCGC
TTATCTAGAAAACATGGAAGTAAAGGACGATTTTTGTCACATATTGTCTT
CTACCATTTCTCAAGCAGACTTCAACAATTAAAGTTTGTCTTAGAAGTAT
GTGGAAACTTTACTTTCTTAACAATTTCTCAGAATGCTTTAATAGTAAGC
TATGCATCGTTGCAAAGATATTTTAGAGGTGAAGAATCTAAAAGATTGTA
ACTTACTTTAGTACtaagtaaaaaaaagtaaagcgTCCACAAATACTTTT
GATACGCGGATTTGGGtttcatccgcgaaattaagtctcaatggaatgtt
ttcaaacaaatatcctgtcaaataaactactttttcaatgtttactggca
tcaaagaagtgctaataGCGCGTCTTtaaacaaccaacatgcatgatgtg
atgatttgacagtaaaagcaACGAactcgtgaaaatattgtctcccaata
gtgccacccgcgaaaatCTATCCTATTAAAGTATGTATGTCAACACATTG
CAAACAATTTGGTAATTTTAGATACCCCATTCTCACAAACCCTGCACAGA
CTCGGTaggatttttgttaaaaagaacGGACCAAAGCTCGATGGTTATTG
ATACTCCCATGTTTTATATGGCTGgagaattccattgtttttgagcaAGA
AAATTCAGAGGGGAAGGACGAAATAGCACAATATTATGCAGTGAGGATTT
TCTTATCTGGTTATTTTCagcagggacaaaaattggagaaaaactTTCAG
ATaggaacgatattttggccaatttttccagtagcAAGGGGGTCCCAGTG
GAGTGGgtatgtgagaagggggtgttttaagttttttttaaacctgCATT
TCAGCAAGAAGTAAGTGAAGATTATTCTCTTCTACCAAGAAAACATTAGC
TTATAATTTTTAATGAGAATTtactatggcgcgccaaagcggaaataaat
actatctttcatttcgcgacactatctttcatttcgcgacactatctttc
atttcgcga

Coding sequence (CDS) from alignment at sc0000095_pilon:1001830..1004388+

>MSTRG.12584.1.p1 ID=MSTRG.12584.1.p1|Name=MSTRG.12584.1.p1|organism=Clytia hemisphaerica_ch_hm2_pilon|type=CDS|length=2592bp|location=Sequence derived from alignment at sc0000095_pilon:1001830..1004388+ (Clytia hemisphaerica_ch_hm2_pilon)
ATGAACTTCGTACACGTTTTTGTTCTTTTGGTGGTTTTCGTCAACAAAAT
CGAATCAAAATGTGACGCACTCACTCGATCAGTTAACGGTCaatacaatt
caaaattcattttaaatttgGGAGATGGATTTCGTTCAACAGATTTAACG
ATCAAGTTCGTTGACGTTGTACAGAATGTTGATGCTTCGCATAGTAAAAC
ACCGAACGCAAAGAGTATTATAGATGGagggaaaactttcaaaataacaG
GTGGCTTCTCACAAAGAAGAATTGAAGTTCACGTCAAGGGTTACAACACT
AAACTTTCATCAATCGAAGCAACAGGGATCGACTGCAACTTTGAAGGAAA
ACAATGTAAATCAAGTGACTTTGGTGCAGCAAAATGTGAAAGAATGCTTC
GAGAAAGGACTATTGAGCAAGGAAAGATTCAAAGTGGAATTTGGTTCACA
AGCGGAAATGATTTTCGCTTTGGTGCAAAATTGACGtttggTTTTGAAAC
AGCTGTCCCAGACTTTCACGCATGGCAAGGGATCAACAGACTCTATGAAA
AACCACaatgtcaaaatattttccactTTCAATCACAACAAGGAATGGTT
GCTGGAGTATCTCGACTTTCTGTCAAATTTCATTACTCGCCACCTGGCAA
ATTAGTTTACATCGCTTTTGGGGATGTAGAATGTCTACAAGTGTGTGGAA
CAAAACCAGACTGTCTTCTTCCAACAACGCCTACAACAACAACCACTACG
ACCACAACAACTACAGAAGAACCCAAAGTAACCACAGAACCCGAAGTAAC
CACGGAAGAACCCGAAGTAACAACGGGAGAACCTGAAGTAACCACAGAAC
AACCTGAGGCCACCACAGAACAACCCGAGGCCACCACAGAACAACCCGAA
GTAGCCACAGAACAACCCGAAGTGATCACGGAACAACCCGAAGTAACAAC
GGAACAACCCGAAGTAACAACGGAACAACCCGAAGTCACCACGGAAGAAC
CCGAAGTAACCACGGAACAACCCGAAGTAACAACGGAACAACCCGAAGTA
ACAACGGGAGAACCCGAAGTAACCACAGAACAACCTGAGGCCACCACAGA
ACAACCCGAGGCCACCACAGAACAACCCGAAGTAGCCACAGAACAACCCG
AAGTAACCACGGAAAAACCCGAAGTCACAACGGAAGAACCCGAGGTAACT
ACGGAAGAACCCGAGCAAGCCACGGAATCAACACCTACGACAACCACTCG
AAGAAGACCTATCATTGCCGTCTTAGAGGATTTCGAAGtgaattaaATGA
ACTTCGTACACGTTTTTGTTCTTTTGGTGGTTTTCGTCAACAAAATCGAA
TCAAAATGTGACGCACTCACTCGATCAGTTAACGGTCaatacaattcaaa
attcattttaaatttgGGAGATGGATTTCGTTCAACAGATTTAACGATCA
AGTTCGTTGACGTTGTACAGAATGTTGATGCTTCGCATAGTAAAACACCG
AACGCAAAGAGTATTATAGATGGagggaaaactttcaaaataacaGGTGG
CTTCTCACAAAGAAGAATTGAAGTTCACGTCAAGGGTTACAACACTAAAC
TTTCATCAATCGAAGCAACAGGGATCGACTGCAACTTTGAAGGAAAACAA
TGTAAATCAAGTGACTTTGGTGCAGCAAAATGTGAAAGAATGCTTCGAGA
AAGGACTATTGAGCAAGGAAAGATTCAAAGTGGAATTTGGTTCACAAGCG
GAAATGATTTTCGCTTTGGTGCAAAATTGACGtttggTTTTGAAACAGCT
GTCCCAGACTTTCACGCATGGCAAGGGATCAACAGACTCTATGAAAAACC
ACaatgtcaaaatattttccactTTCAATCACAACAAGGAATGGTTGCTG
GAGTATCTCGACTTTCTGTCAAATTTCATTACTCGCCACCTGGCAAATTA
GTTTACATCGCTTTTGGGGATGTAGAATGTCTACAAGTGTGTGGAACAAA
ACCAGACTGTCTTCTTCCAACAACGCCTACAACAACAACCACTACGACCA
CAACAACTACAGAAGAACCCAAAGTAACCACAGAACCCGAAGTAACCACG
GAAGAACCCGAAGTAACAACGGGAGAACCTGAAGTAACCACAGAACAACC
TGAGGCCACCACAGAACAACCCGAGGCCACCACAGAACAACCCGAAGTAG
CCACAGAACAACCCGAAGTGATCACGGAACAACCCGAAGTAACAACGGAA
CAACCCGAAGTAACAACGGAACAACCCGAAGTCACCACGGAAGAACCCGA
AGTAACCACGGAACAACCCGAAGTAACAACGGAACAACCCGAAGTAACAA
CGGGAGAACCCGAAGTAACCACAGAACAACCTGAGGCCACCACAGAACAA
CCCGAGGCCACCACAGAACAACCCGAAGTAGCCACAGAACAACCCGAAGT
AACCACGGAAAAACCCGAAGTCACAACGGAAGAACCCGAGGTAACTACGG
AAGAACCCGAGCAAGCCACGGAATCAACACCTACGACAACCACTCGAAGA
AGACCTATCATTGCCGTCTTAGAGGATTTCGAAGtgaattaa
Gene-mRNA-Prot
This mRNA is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
MSTRG.12584MSTRG.12584Clytia hemisphaerica_ch_hm2_pilongene
The following exon feature(s) are a part of this mRNA:
Feature NameUnique NameSpeciesType
MSTRG.12584.1.p1.exon1MSTRG.12584.1.p1.exon1Clytia hemisphaerica_ch_hm2_pilonexon
MSTRG.12584.1.p1.exon2MSTRG.12584.1.p1.exon2Clytia hemisphaerica_ch_hm2_pilonexon
The following polypeptide feature(s) derives from this mRNA:
Feature NameUnique NameSpeciesType
MSTRG.12584.1.p1MSTRG.12584.1.p1-proteinClytia hemisphaerica_ch_hm2_pilonpolypeptide
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0000095_pilongenomesc0000095_pilon:1001830..1004388 +