MSTRG.12271.1.p1 (mRNA) -

Overview
NameMSTRG.12271.1.p1
Unique NameMSTRG.12271.1.p1
TypemRNA
OrganismClytia hemisphaerica_ch_hm2_pilon (Jellyfish)

Sequence
The following sequences are available for this feature:

mRNA from alignment at sc0000092_pilon:121857..124155-

Legend: exonfive_prime_UTRpolypeptideCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>MSTRG.12271.1.p1 ID=MSTRG.12271.1.p1|Name=MSTRG.12271.1.p1|organism=Clytia hemisphaerica_ch_hm2_pilon|type=mRNA|length=2299bp|location=Sequence derived from alignment at sc0000092_pilon:121857..124155- (Clytia hemisphaerica_ch_hm2_pilon)
TTAAGGTATCTAGAGGGTTTCTTGACCTGATCAATTTTGTAAAATAATCT
TTTTGTTTATTTGGATTTCCATTCAATTAATTTCGAAGACAGATGCAGCT
AAATACATAAATGCAGTATTTATTACAACAAAGATGTTAAAATACAGAGT
ATAGTTTTACAATATTGAGAGGTCCGAGTAGTAAATGAGTACAAAGTCTT
TCATTTCAGTCTATTAGTTTCAGAACACTTGCAGGAAACCTATAAAGGGT
TGAAGATTGTCACTGAAAATCATTCCAGCTTTGAACTCAAACACCTGTTG
ACAAACTTGAAGAGACAAAAATGTTCTGCGGGCAGAACCATCTCAAAATA
TTATCTGGAACTAAAGCCAAAATGAACCTTAAAGGCTTCATATTGGTCTT
ATGTGTTGTGACTATCACCGTGGCTGCAAGAAATCGTCGCTTTGAGCTCA
GCAACAAATACACAGCAACTGCTTTCAACCATCGCCAGATGTTCTTGGTA
ATGCATTACACTGTTGCCAACTTCACCAAATCTGTTGACCTTCTCACCAA
CCATCTCAGCGCACACTACCTAGTCCCTAAAGGTTACCACAATAGAAAAC
GCGTCGTTTACCAACTGGTTCCAGAAGACAAACGCGCCTGGACTCAAGGA
GTCAGCGAATGGCAGAAACGTCAAAATCTTAACGATCAAGGTATTTCTAT
TGAAATCGTCAACAAAGGGTTCACCGACCTTCCCAACGGAAATCGAATCT
GGTATCCGTTTGATGCAGCGCAAATCAAATCAGTCATCGAGCTTTCACAA
GATATCATCAAGCGGTACAAAATCAAACCTTACAATGTCATTGGTCACTC
AGATTGTTCACCTTTACGTAAAGAAGATCCAGGGCCATTGTTCCCCTGGA
AGAAGTTGTTCGATGCTGGCATTGGAGCATGGCCAGATCAAATGGATGTT
GATTATTTTATCAAACAAATGCCATCAAATATGGAAATCAACGTCAAAGA
ATACCAATTGGCCCTGAAGAAGTATGGTTATAATATCGAACCTACAGGTG
CTTTTGACCTTGCAACCAAAGCTGTCGTTAAGAGATTCCAAATGCATTTC
CGAAACAGCAAATTTGATGGAGTGATGGACGTTGAGACGTTTGCTATCTT
GAAAGCTCTCTTACGTAAGTATTTTGGTGAGTACAAGAAACTCATTATTG
ACTTTAACTAAGTATGAACTGAAGTTTTCTTAGTCCCTAACTTTAAACTG
GTCTGGATAAAAGCTCAATTTTTAACTAAATTTTCATTTACCCTCTTGAA
AACTGAATTTGAACCGGTAATATAATATTCATTCCTTAATTTTTTCTTAG
TTTTTCTTTTGCTTAAATTCTAACATATTAGTCCCTATTACAACTTTGTC
ATTCTAAACTAATTGAAATTTCAAAACTGTTGTCATCATCCCACCAGTCT
TTCTTCTACATTTTCTGGAAATTACTTGGAGATCCAGGCTAATCATCTTT
TCTCAGAAATTCTTGAAAATAATTTAATTAATATACAGTTTCATTTCTAA
ATGTTTCTTCCTGTTTCTCTAGAATATTTTCTTTAAATTTTCTTCTAACG
AAATATACTGCTGGTCAGTATCTCATATTATCTAACATATATTTATTGTA
AAAAAGATTATATATTATGAATCTAGATGAAAAGTTATATTCTTAGCTAC
AACCCCAGGGATGCACTGAGGAAAAATGGGGGCCGGGCTGTTCGAGCCAC
AAAGGATCCCTTTTCACACCCTTGAAAATCTCTCAAAGGGCTATAACGAC
CATAAAAAAATCACTTAGTCTCTAAGGGTTTCAAAACTGGGAAAATCGAA
CATTGACTCCCTCAAACTTAAAGGGTGGTAGATTCTTGAAATTTTGACCA
AAGTCTGAGATTTTGGGAAAATAACCTCTCTAAGGGTCGTAAAAACGTCA
AAATAGAGAACATTTTCAAAATTATGTGGCTACAAAACCTCTTAATGTGA
TATATTGATTAAAATAATTCATATTCATTGTATTGAGTACCGTATTTCCT
TAATAAATTTTTAACTCCGAATTATTCTTTTTCTTGAATTAAACCTTAAA
TTTATATCAAAGCTAAGGATAGAATCTCCATCAAGCTTTGGATTTTTTTA
GTAGAGTTGTTGTTCCCACACAAGCGCTATACTATTCGTACTATGCGAAA
ACAGAACAGGTATACTAAATTCAATCCCTCGTTCAAAACGCGACGCAAAG
TTTTTTTTTGATTATATTCTAATCTTATGCTTTTGTTCTACAAGTTTTG

Coding sequence (CDS) from alignment at sc0000092_pilon:121857..124155-

>MSTRG.12271.1.p1 ID=MSTRG.12271.1.p1|Name=MSTRG.12271.1.p1|organism=Clytia hemisphaerica_ch_hm2_pilon|type=CDS|length=891bp|location=Sequence derived from alignment at sc0000092_pilon:121857..124155- (Clytia hemisphaerica_ch_hm2_pilon)
ATGTTCTGCGGGCAGAACCATCTCAAAATATTATCTGGAACTAAAGCCAA
AATGAACCTTAAAGGCTTCATATTGGTCTTATGTGTTGTGACTATCACCG
TGGCTGCAAGAAATCGTCGCTTTGAGCTCAGCAACAAATACACAGCAACT
GCTTTCAACCATCGCCAGATGTTCTTGGTAATGCATTACACTGTTGCCAA
CTTCACCAAATCTGTTGACCTTCTCACCAACCATCTCAGCGCACACTACC
TAGTCCCTAAAGGTTACCACAATAGAAAACGCGTCGTTTACCAACTGGTT
CCAGAAGACAAACGCGCCTGGACTCAAGGAGTCAGCGAATGGCAGAAACG
TCAAAATCTTAACGATCAAGGTATTTCTATTGAAATCGTCAACAAAGGGT
TCACCGACCTTCCCAACGGAAATCGAATCTGGTATCCGTTTGATGCAGCG
CAAATCAAATCAGTCATCGAGCTTTCACAAGATATCATCAAGCGGTACAA
AATCAAACCTTACAATGTCATTGGTCACTCAGATTGTTCACCTTTACGTA
AAGAAGATCCAGGGCCATTGTTCCCCTGGAAGAAGTTGTTCGATGCTGGC
ATTGGAGCATGGCCAGATCAAATGGATGTTGATTATTTTATCAAACAAAT
GCCATCAAATATGGAAATCAACGTCAAAGAATACCAATTGGCCCTGAAGA
AGTATGGTTATAATATCGAACCTACAGGTGCTTTTGACCTTGCAACCAAA
GCTGTCGTTAAGAGATTCCAAATGCATTTCCGAAACAGCAAATTTGATGG
AGTGATGGACGTTGAGACGTTTGCTATCTTGAAAGCTCTCTTACGTAAGT
ATTTTGGTGAGTACAAGAAACTCATTATTGACTTTAACTAA
Gene-mRNA-Prot
This mRNA is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
MSTRG.12271MSTRG.12271Clytia hemisphaerica_ch_hm2_pilongene
The following exon feature(s) are a part of this mRNA:
Feature NameUnique NameSpeciesType
MSTRG.12271.1.p1.exon1MSTRG.12271.1.p1.exon1Clytia hemisphaerica_ch_hm2_pilonexon
The following polypeptide feature(s) derives from this mRNA:
Feature NameUnique NameSpeciesType
MSTRG.12271.1.p1MSTRG.12271.1.p1-proteinClytia hemisphaerica_ch_hm2_pilonpolypeptide
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0000092_pilongenomesc0000092_pilon:121857..124155 -