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Sequence
The following sequences are available for this feature:
mRNA from alignment at sc0000090_pilon:1250288..1258506+ Legend: five_prime_UTRexonpolypeptideCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below. >MSTRG.12167.1.p1 ID=MSTRG.12167.1.p1|Name=MSTRG.12167.1.p1|organism=Clytia hemisphaerica_ch_hm2_pilon|type=mRNA|length=8219bp|location=Sequence derived from alignment at sc0000090_pilon:1250288..1258506+ (Clytia hemisphaerica_ch_hm2_pilon)
TGGATGGAATGATCGAGTCGTACACTCGAACGGGAATAAAACAATCGAGG
CATACACTACTTGACTTCAATGAGATGCATTGCTTATTCATGaatggtaa
aaatattttctttctatgATTTGAGGTTCCATCCTCTTGATTTATTTTGA
CTTGAAGCTTTGTATAGAGTTTTCATTGATAAGGAACATTGAATATAGTA
AAATCGtcaagataatttttttattgttttcagcAAAAGGGTTTTAACTG
AAAACAAACAGTTTGTTGAAATGTTTTAATATGAAAATTTTGGCATGTAT
ATTACATATAACATAGAACATTGAAAACTTTCTTAGTTTTTAAGCACTTC
GATTATTTTCCTTATCCGGCTGCAGTGCAATTATTCGATTTTGTAGTGAA
GCGGCCTTTTAAAAAGTATGTGCAGAGTAAAAAATTAATTGACATTGACA
TGCTTCATTCTGCAATTTCTCATGCGCTTACAAATCAATATAAATTGTAT
TGCAGCTGCCTGTAAAATCTTATTAGTGCAACCATAGGTCTGGTTTAGAC
GGCCCTGCCTATTCTATTTGTGAATTAAAGCGGGCAACAAGTTAGCTGTC
TAAAGTCGATGCATTGCCCTTTTTTGACGttaatacaatacaatacaatg
acttcttttgaTCTTTTTGTGGCGGAAATTTTAACAGCCAACTCTCTGCC
CACTTTTTGCCTcccttagctctagtttagacggccgacttttcgccctg
cctattctaattgttagagtaggcaaaaagtgggcGCAAAGTTAGTAGTT
AAGTAAAATCTTTGctttgaaaagattgaaagaagacattgcattgacgt
ccaaagagggcaatgcatgaCTTTAGACTACCAACTTTaggcccacttta
attcacaattagaataaaAGCAGGGCGAatagtgggccgtctaaactaga
gcttaacAATTATTAGAATAGGTAGACGGGCAGAAAGTCATCTAAACTAG
TGTTTTTTCATGATATCTGTTGGTATTGCCCTGAGGAAATTGACTTGTTC
AATGTCGGAAAGGagttatcaataaaatcaaaataacataaCATAGTCTC
TGCCATCTTTATTAAaaattgttaaccggttacctTTTGGAAGCGGGCTA
CAAAGCTTTTAGCGCAAttcaattggttcttttcgcatgacgacagGCCT
TCACTACACAGAGTttcccgtcgttaggaaaattcattgtgatgtcactt
tttcaaaggaaagggaacaatgcgttgacatcatctctctcatttttcat
tttcggtgtcagaagttagaattttttggtcatttttcgcttgttttttc
gctatttttcgctattttttctgGATAAGGTGCGAAAAATCAAATGAAGC
TGAAGCAAACGGTTAACTAATACAATAGTGACCgcttttttcgggctgta
ccgAGAAATATCGCCCTCgttcaacgcaacaacctcgaaagctcggtcgt
tacttgacctcgggaaatatttatcagtacagccctcactaaccggtgaT
TTACAGGCGAATTTATGAAGTTGTtcttcctttttaccattttagtGACT
TTTGAACGATGGAGAAGAAATCAATCCACATAGTCATCACATTCATAATA
ATACCCTCTCTCATCACAGCAATTCATTATGATAAAGTGGAtcttacttt
cactttcgatttgaaCACCAACGATCAATCTTTTGTTCTTGGTACCCACA
CAAAGCTGCCTCAAGAAGATGTGGAAATTCCTTTGGACCGGTTAATAGCA
TACCCGTATATTGTAGATGTGTCAGGTGAGAATTGAAACCACAAATATCA
TATTGATCTATACATACTAGACAAGGTTCAAAGAAGGTAGAGtcttaact
ctgagttttaacatgagacttaagacttagaagGAACTTAGAATCACAGG
AtataaaagctcaaaaatgttccaatatggCATAGAaaatagcctggaag
ccacttaacccctcccaaatcgagaAATCCACTGGAACAAGGTGGAAGTA
TTGAAATTATAATTCTTGCacgagctttaaattctgaaaacattATAAAA
TACCCCAAATTGACAATATATTTGGGCGCCGattgaagttttgaagtttg
AATACAAAATCAGTTGCAAACATCCATTCTTTTTAGGGCGCttctgtata
aaacattacgtaatggataTCATGAATGTTATATattgttttcatatttt
tataccAGGTTATGTTTGGAGCGATGCAAACTTTCAATTAGAGATTCATC
ATTTAATGGAAATAGAACACAAGAAAGGAGAAATTCCAGAAAATTCTGCT
ATAATTATGTACACTGGTATGTAATGAttctttttggaatttgtttGAAC
AAATGTTTTTACAGAAGCAGTCagtactcttgggtacctaatagccgggg
aggggggttggaaaaaatctcaaaacttaataagctgggggttggaataa
aaatttcctgggtggaaaagtttttaaaaggaggctaatacagcagattt
tagtctgaatcgcagacctctacaaaaccccaggtagcaTAGGAgcataa
ggagcacgaatccgttagtggatgccagcagcctaagcagaattaggaca
aaagagggaactttcaaaaacattttcccaaaaattgatAAGCGCGGGGG
GAGGGGTtgaaataagaatgtcctgggtgggaaattttcaaaaaattaat
tagcgtgGAACGGCTATATtgggtacccgagagtaaccggtagagcatcc
agctacggtgcgcaaggttgtgtgTTCGACGCAGGGTCATACCAAAAATT
ACCATAATAGTATTTGATTGATATCtgtttgatgctcagcaataCATGGG
TACTATTAAGGACACTGTATCATATTATAGTTAGGTTAAAATTGGGACCT
TGCTGGAATGCcttacaaaattatttttgggaaTGGAATATGCATTTGTC
CAGGTCTGGGATCAGTCTAGGACTGAGATTAAATTTTCTGTATTTTCCAA
CCATTACAGGGTTGAACCTTGTCAGGTTCAAAATAAGGAACCCATAAGGG
CAGAACATATTCGTACCgtcacttgcctaagtacccccccccctcccgcg
GATCAATGCATATTCAATTCCCAAAAACTAAGGGTCGGAAAAATAGATaa
atttcaattttctacccctaaaaatatagaaatttgtTCTGTCTTTCAGG
TTGGTGCTTGAAGTACAGGAACTTGGACAAATACTTTGGAAGTAACAATC
TTTCGAATACTTCACAATACCATCATCCGGGAATCCATTCAGAAGCAATT
ACATGGCTCAGTGCAAAAAGAAAGGTACGCCAAtttttttacacccctgt
ctcacagccctggtggaacttttCCTCACAGCGGgaataaaatttccata
aaataagtagtctagcaagctagacgactaattcagacatattagaatta
aagcaaaaaagtaaattttagtcgtctagaaacctttgtgcactaactcc
aaacaaaaaaaaagtgtcaatatcgcaattaaaattttttcccgctcaaa
aaaaattcttgaaaataaaatgtgtgtggatttgtgtgttaaaaatgttt
catttgagttgattttattttgagagtttgttgttgcttaaggtatgtgt
acaccttttttccgattttttgtcaaaaaaatttttttcagtcaaagtgg
aagaaaagttactggattcggcaagtacaaaacgcctactacctactaca
taatacttactacctactacttactacttactacctactcagtttgtata
ctttacagaccagaactctccttcgcttgttcgaaatctctattctaaaa
aaattggttttgtaaTACCTGAATGCTAACACacaagtctttgctttata
tttacttgaaaaaagtgttatctaaaagaatatttagcaTATTTATATTT
ACGTAGTGAGTAAATATTCTCTTCGCCTCATATAAGTATACTGAAGTATA
AAACAAAAGGccattatcttgattttttctttttcctaaacctactctct
cttatgactcttattataagaactttcctttttccttAACATACTCCTtc
ttatgactcttattataagaCGATAAGAATACACGTAAATGTCTAAAAAA
GGCTCTGTAATATAAATAGGGGTCAATCTATCTATATCCTATTGTATGAT
CTGCATCATATCAAATgttgccaaaatatttcttggaattggTTTGCGAA
GCTTTTAACATTCATTAactgtgtcaatatttttatcaaaaatttcattt
cgtcaATACTTTGACATGGTCAAATTGAcacctctaaaacagctctttgt
agtattttcctactgaaaatttctaccTTGCGATATTGAAAACATCTTAT
TGAgcacaataagaatttttgctaCATAAAATGAAGCTCGAAATGAAGTC
TACAAAGGTCATATTTAACGACCCTGTCAATAGTTTGGTTCAAaagggtc
attttgtcaataaatgtcaaagacatgtcaaaggattttaggtattttac
aagttttttttgtacaatatagcataattattaaatgaaaatctaactgc
gccccaagactattttgctgacaacaatattgaaatcatgaaCCATCAGT
TTttccgctcgcttcgctcgcattacatattgtttctttaagtttctttt
cactctagcaagtgtcaaatttgtctatttttatttagtgatttagggta
tcttggcagtcgatttttaaaaattttctagtcggccccaaccatggtgg
ggactgtttttccctttttccattcatcaaagatatatctactcttctcc
aTTAAATATtcccttcctcattatgcctaggcaaatgaattagtaaaagt
ttagaaactggtgggtgaAGGCACCACTTTcgaaaattggggggggggcc
attttaaaaaaattgactttggcccctccagaaaaattttcccacagcGC
CACTGGGCCTCTACTTACttaaagtattttaactttttagattgatcgat
tcttataaataaaactgacatgaataaataagtgtgcgaaggaaatattt
ttctcttctacgAAGAAGTgcgtctgtaaactttatagaaaaagcgcggg
aaaaagtcataaacaaaataaaagagagaaaatatttcgaagtcttcaaa
gtacgataaaagaagaagttttagcttttttaccaccaaagtttcagatt
ttgctaattttaacatgctgaatattttaaaggtaatttcgagccgtttt
gagctattttacagtaggtagtaagtagtaggtagtaagtattaagtagt
aggtagtaggcgttttgtacttgccgttactggatttcattttggtaaaa
tcgcgatcttaaaatcttttttgatccagagttatgaccatttaaatttt
aaaacaaagttcgtctcatgatggattatttactcaaataattgtctctt
tcggaaacaacaaagagaaaagagagaattcagctgatgtttattctcac
atctattgaatagtaacatttttgacacatttctctGATTACTTAATTAA
ACAGTAATTATCtcgtcaaaaatttcaaattgatgtagaaaaaaatgaaa
ttttaccataccatactacttttaacgaggttaaagtcacccatagcatt
tagctatgaacttaattttttttatatattttcggcaaagaattgaacta
aaaaaatgtcttaggattttttttctaatcgagttaaagcttcacaattt
caggttaagtggaaaaaaatcgagaaatgaatgatttttttccaaatttt
aacaatttttaagttttctcgagttaaagtcgatccaaaaaaaaatccta
agacatttttttggttcaatctatttggaacatagtatcgaaattatttt
ttcaaatttcaaaagctatgggtgactttaacttctttgaagtaggtaag
gttaaaattcttaagattttaattatatcctgcccagttttttaaattca
gctgaaacttttaccattagaaagagaatattattggctttcagaaaata
tatacttttgatgtataaaaatttgttgttctaaagatatgatcaattaa
agagaatgtgtcaaggaaggtgaacacataccttaataaattgttttctc
gctacgcaagtttctgcgtagctaggcccggtatctataaggctggaaca
ccggattcttccagtcgtttatacaaactaaatcccgtatcattatttgt
gtttattattagtattacatgcattataaacgactccagtctataaaaTA
AGATAATAATAAGCAActatatagtagggggaaatttgctcgtttttttt
gaggtcgctcgatttttttagtcaaagcacttgttatacatttttggaaa
gctaaggggtaggggaatcaaaataacttgggtgccaattttgttttaga
cactttggtgtgattttcggacaaatacgacagtctcaggcaaaaatcat
agggtgaaaaattaatgaaaattttagcttgagaaaacggagacctgttg
tatatttttggaaagctctcaaaaaattaagattagtgatatattgcgag
tataggtgatttctttacctaactcgagatattaatccttaaaaacagag
tttttcagtgtttttaagccagaaacagctgttttgtcatGTTCTTGCGC
TTCACTgaaatgatttttgcctgagactgtcgtatttgtccgaaaatcac
accaaagtgtccgaaacaaaattggcacccaagttattttgattccccta
ccccttagctttccaaaaatgtataacaagtgctttgactaaaaaaatcg
agcgattttacaaatttccccctactaatataTAAAGAACGACATTAAGA
ACGACAATTAAGATTATAAGTACTAACCTTAATATTAACACTTTGGAGTA
AATCTTTTTGGAAGAATGAACGGAAattttatagaatttttaaTTTGCTT
GAATTCTCTATGCATTCATGCCATCTCATATTTGAACGTTTTTTGATAGC
TTCAAGAAAACCACAGATTCGCTCCTCTAATCCAGATTAAATCAAAAGAT
TCAGAATAATTATTATTGAATTCACTTCCcagggggggcagtgggtttac
caactgacggtatgtgcggcaaaaaaaatggcttttaggcacccttacag
tgcagaaagaAATCGgagaaattcatacccttacagtacatttttactaa
ttttcaactcttttttagagcaaaaaaatcaagattttcgaccaaaatct
gctatttttcttagatttgctgaaatttccaccattattacagtgcattt
ctgatattttgaacaTAACGTGTTTCATTTATTtgaaacatacccttaac
cgccgcacatacccgtcggtcaatttgcctaactgccccccccaccccgg
aTCCACTttaaaattacaaataaatactaaagataatcattaaaaaataa
cttaaacattaaaatCACTTTCAGATATCATCCATTCTTTCCGACACACC
GTCTATCGACGCCGGACAAACCACCGATTTTCCGTCACAATCAATATTAC
ATTCAGAAAACATCCCGTTCTTCCTGAACGTCGATCTAACATCTTATGAA
CGTATCAAACGGATGAAAAAACCACTCCTCATAGCCCTACCTgctcaaat
tcaaaatggcagccGTATCGTACCAACTAGAATCGTTGTTATGGAAACGA
CGAATATTTTAGTGTCATCTGACggatatttgtttgtttttggcgtcatt
tttttaacgcttgtttttcatttCGTATCAAAGCTTCTCATTGGATATTG
AAAAAGTTCTTCATTATCAAATTTTCGTGTCCCAGATGTTCGAGGCTGAA
TTCATGACGATCACGACGTAATTTTTCATATACggaaacaatcaaaaaag
aCCGGATGTTTGTTATCTCCGAGTGGATTCTGATACTCCGCGCATGGCTT
CATATtcacttaaagggataatcagatggtttgagatattttgcctatag
atagcttctaggattttaggaaaaacttctaaattttttggtgtacttat
tttcctaactaaAGTTAta Coding sequence (CDS) from alignment at sc0000090_pilon:1250288..1258506+ >MSTRG.12167.1.p1 ID=MSTRG.12167.1.p1|Name=MSTRG.12167.1.p1|organism=Clytia hemisphaerica_ch_hm2_pilon|type=CDS|length=3108bp|location=Sequence derived from alignment at sc0000090_pilon:1250288..1258506+ (Clytia hemisphaerica_ch_hm2_pilon)
ATGGAGAAGAAATCAATCCACATAGTCATCACATTCATAATAATACCCTC
TCTCATCACAGCAATTCATTATGATAAAGTGGAtcttactttcactttcg
atttgaaCACCAACGATCAATCTTTTGTTCTTGGTACCCACACAAAGCTG
CCTCAAGAAGATGTGGAAATTCCTTTGGACCGGTTAATAGCATACCCGTA
TATTGTAGATGTGTCAGGTTATGTTTGGAGCGATGCAAACTTTCAATTAG
AGATTCATCATTTAATGGAAATAGAACACAAGAAAGGAGAAATTCCAGAA
AATTCTGCTATAATTATGTACACTGGTTGGTGCTTGAAGTACAGGAACTT
GGACAAATACTTTGGAAGTAACAATCTTTCGAATACTTCACAATACCATC
ATCCGGGAATCCATTCAGAAGCAATTACATGGCTCAGTGCAAAAAGAAAG
ATATCATCCATTCTTTCCGACACACCGTCTATCGACGCCGGACAAACCAC
CGATTTTCCGTCACAATCAATATTACATTCAGAAAACATCCCGTTCTTCC
TGAACGTCGATCTAACATCTTATGAACGTATCAAACGGATGAAAAAACCA
CTCCTCATAGCCCTACCTgctcaaattcaaaatggcagccGTATCGTACC
AACTAGAATCGTTGTTATGGAAACGACGAATATTTTAGTGTCATCTGACg
gatatttgtttgtttttggcgtcatttttttaacgcttgtttttcatttC
GTATCAAAGCTTCTCATTGGATATTGAATGGAGAAGAAATCAATCCACAT
AGTCATCACATTCATAATAATACCCTCTCTCATCACAGCAATTCATTATG
ATAAAGTGGAtcttactttcactttcgatttgaaCACCAACGATCAATCT
TTTGTTCTTGGTACCCACACAAAGCTGCCTCAAGAAGATGTGGAAATTCC
TTTGGACCGGTTAATAGCATACCCGTATATTGTAGATGTGTCAGGTTATG
TTTGGAGCGATGCAAACTTTCAATTAGAGATTCATCATTTAATGGAAATA
GAACACAAGAAAGGAGAAATTCCAGAAAATTCTGCTATAATTATGTACAC
TGGTTGGTGCTTGAAGTACAGGAACTTGGACAAATACTTTGGAAGTAACA
ATCTTTCGAATACTTCACAATACCATCATCCGGGAATCCATTCAGAAGCA
ATTACATGGCTCAGTGCAAAAAGAAAGATATCATCCATTCTTTCCGACAC
ACCGTCTATCGACGCCGGACAAACCACCGATTTTCCGTCACAATCAATAT
TACATTCAGAAAACATCCCGTTCTTCCTGAACGTCGATCTAACATCTTAT
GAACGTATCAAACGGATGAAAAAACCACTCCTCATAGCCCTACCTgctca
aattcaaaatggcagccGTATCGTACCAACTAGAATCGTTGTTATGGAAA
CGACGAATATTTTAGTGTCATCTGACggatatttgtttgtttttggcgtc
atttttttaacgcttgtttttcatttCGTATCAAAGCTTCTCATTGGATA
TTGAATGGAGAAGAAATCAATCCACATAGTCATCACATTCATAATAATAC
CCTCTCTCATCACAGCAATTCATTATGATAAAGTGGAtcttactttcact
ttcgatttgaaCACCAACGATCAATCTTTTGTTCTTGGTACCCACACAAA
GCTGCCTCAAGAAGATGTGGAAATTCCTTTGGACCGGTTAATAGCATACC
CGTATATTGTAGATGTGTCAGGTTATGTTTGGAGCGATGCAAACTTTCAA
TTAGAGATTCATCATTTAATGGAAATAGAACACAAGAAAGGAGAAATTCC
AGAAAATTCTGCTATAATTATGTACACTGGTTGGTGCTTGAAGTACAGGA
ACTTGGACAAATACTTTGGAAGTAACAATCTTTCGAATACTTCACAATAC
CATCATCCGGGAATCCATTCAGAAGCAATTACATGGCTCAGTGCAAAAAG
AAAGATATCATCCATTCTTTCCGACACACCGTCTATCGACGCCGGACAAA
CCACCGATTTTCCGTCACAATCAATATTACATTCAGAAAACATCCCGTTC
TTCCTGAACGTCGATCTAACATCTTATGAACGTATCAAACGGATGAAAAA
ACCACTCCTCATAGCCCTACCTgctcaaattcaaaatggcagccGTATCG
TACCAACTAGAATCGTTGTTATGGAAACGACGAATATTTTAGTGTCATCT
GACggatatttgtttgtttttggcgtcatttttttaacgcttgtttttca
tttCGTATCAAAGCTTCTCATTGGATATTGAATGGAGAAGAAATCAATCC
ACATAGTCATCACATTCATAATAATACCCTCTCTCATCACAGCAATTCAT
TATGATAAAGTGGAtcttactttcactttcgatttgaaCACCAACGATCA
ATCTTTTGTTCTTGGTACCCACACAAAGCTGCCTCAAGAAGATGTGGAAA
TTCCTTTGGACCGGTTAATAGCATACCCGTATATTGTAGATGTGTCAGGT
TATGTTTGGAGCGATGCAAACTTTCAATTAGAGATTCATCATTTAATGGA
AATAGAACACAAGAAAGGAGAAATTCCAGAAAATTCTGCTATAATTATGT
ACACTGGTTGGTGCTTGAAGTACAGGAACTTGGACAAATACTTTGGAAGT
AACAATCTTTCGAATACTTCACAATACCATCATCCGGGAATCCATTCAGA
AGCAATTACATGGCTCAGTGCAAAAAGAAAGATATCATCCATTCTTTCCG
ACACACCGTCTATCGACGCCGGACAAACCACCGATTTTCCGTCACAATCA
ATATTACATTCAGAAAACATCCCGTTCTTCCTGAACGTCGATCTAACATC
TTATGAACGTATCAAACGGATGAAAAAACCACTCCTCATAGCCCTACCTg
ctcaaattcaaaatggcagccGTATCGTACCAACTAGAATCGTTGTTATG
GAAACGACGAATATTTTAGTGTCATCTGACggatatttgtttgtttttgg
cgtcatttttttaacgcttgtttttcatttCGTATCAAAGCTTCTCATTG
GATATTGA
Gene-mRNA-Prot
This mRNA is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this mRNA:
The following exon feature(s) are a part of this mRNA:
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| sc0000090_pilon | genome | sc0000090_pilon:1250288..1258506 + |
|
