MSTRG.11997.1.p1 (mRNA) -

Overview
NameMSTRG.11997.1.p1
Unique NameMSTRG.11997.1.p1
TypemRNA
OrganismClytia hemisphaerica_ch_hm2_pilon (Jellyfish)

Sequence
The following sequences are available for this feature:

mRNA from alignment at sc0000089_pilon:79262..81115+

Legend: five_prime_UTRexonpolypeptideCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>MSTRG.11997.1.p1 ID=MSTRG.11997.1.p1|Name=MSTRG.11997.1.p1|organism=Clytia hemisphaerica_ch_hm2_pilon|type=mRNA|length=1854bp|location=Sequence derived from alignment at sc0000089_pilon:79262..81115+ (Clytia hemisphaerica_ch_hm2_pilon)
CTTATTCAAAAGGCGGACAGACTTCAATAATTGATCAGAAATTTTGGAGA
ACAACCAGGGGGTTTGTTTGGACATAAACATATATAAAGTGTCGCTTACA
CACTTCATTCCAATCAAAAAATATACAGAGTATGTAAAAACTATTGATAT
TGATCATTCGTGAAATCGTTCGCTGTAACAGATCTTTCAAAACGATACCA
TTCAACTACAAGCTTCACATCTTCACGAGAAATCTTCActttaaaacatt
tcaaatgaaGCAACAGTTGGAGCAGTATCATAACCAAGCAATGATGAACG
AACTCAAAGTCGAACTACCGTTTAACGATGCAACTTCACCCACACCTAGC
GGCACCGCAGCCACGTCACCCACACACGACGCTTCGAAGCAACCCAGCAA
CAACTCAAGGGCACCCAAATGCACGCGGTGCCGTAACCACGGAGTTATCA
GTGATCTGAGAGGACATAAACACAAATGCTATTGGAGGGATTGCTCATGT
ACCAAATGTCTCATTAGCTCTGATCGTCAGAGAGCCACAGCCGATCGCAT
CGCACTTTTCCGACAACAGGTACGACAAATTTCGGCCGAAGACCGACATC
ACCGCCGAGAAAAACGAAAATACAGCAATTTAGACGAAGATGTCAGTTAT
CTTACATCCATGACAAGTAAGTAACTTCTTTGCTTCACATCTTATTCAAG
CTTGTGATTTTCAGAGTGTAGTTTTTGGTTGTTAGGGATTGATGacaata
agaaaaaattcaaaagtacgCGAAGCCAAAGTTTGAGGAGGGTGACTAAA
TTTATAAAACATTGATTAGCAGGTCGTAATTCTATAGGTTCTATCAAAAA
TTGGATATATAATTCATGATGGCACcttgtttttacaaaaatagttCTTC
ATGACACCTGTTCAAAAGTAAACTCTTCTGTTCTATACTTTACTTCATGA
TTGGTGTGATCTACAGTATATTGCTTTCGTATCTTTGCCCCTGATGaaca
attaataaaaacaatacAGTAGTAgctaaaaataacttttttttgggcTG
TCAAAACATTCAatacatattttgaaaataaaatcttctaaaattctaat
gaatgaaaatccatttttttcaCCTTCAGCGAAAATTCCATCCCCGAATG
CTCACCCACCATCCTTACataagatgacgtcatcatcctCCAATCACTGC
CCTCCACCACAAGATTCACCGTATTATTGGAGCGATGAGAAAACCACACG
AAACACGCCTGAAATACTTCGAATGATCTTTCCTTTCTACGAACCGGTAG
CCTTGAGCTCCATTTCACGTGAAAATAATTACGATTTGTTGCAAAGTGTG
CTCTCCATCAGCTCTTACTTATTGGAAAAACGCCAGTCGTCATCTTCGTA
TTACCGCCCACCTCATTCACCTCCACCTCCTCCGCCCTCTTCGTTTTACA
AGACTGCGCATGCTTCAGGACGATGTTGTTCAAGTCCGTACTGTCCAGTC
AACTCATACCTAACCCTTCGCAAGAAATCACCTGAAATTATGCAGCATCT
TCCAACACCACCACTGACGGCCGTTTCTCCTTCGTACGACCGCTCGGCCC
GCTCTGAAAGAAGCGAAACAAACCAACCTGTGGCAGAATCGAAACCAAAG
AAATTTCGGTTCTCAACAGATACTGAACTCCCATATTGTGACGCTTGTCA
AAAGTTTGGCATCAAGGGTGACAAGTTTTGTCCCCTTTGCggcattttat
tttcaaattgataaaaattttataaatacaACAACTATATATTATTTCtg
taaatcttttgattttgtgtATATTCTTTGATCTTTGTATATACTGACTC
TTAA

Coding sequence (CDS) from alignment at sc0000089_pilon:79262..81115+

>MSTRG.11997.1.p1 ID=MSTRG.11997.1.p1|Name=MSTRG.11997.1.p1|organism=Clytia hemisphaerica_ch_hm2_pilon|type=CDS|length=2088bp|location=Sequence derived from alignment at sc0000089_pilon:79262..81115+ (Clytia hemisphaerica_ch_hm2_pilon)
atgaaGCAACAGTTGGAGCAGTATCATAACCAAGCAATGATGAACGAACT
CAAAGTCGAACTACCGTTTAACGATGCAACTTCACCCACACCTAGCGGCA
CCGCAGCCACGTCACCCACACACGACGCTTCGAAGCAACCCAGCAACAAC
TCAAGGGCACCCAAATGCACGCGGTGCCGTAACCACGGAGTTATCAGTGA
TCTGAGAGGACATAAACACAAATGCTATTGGAGGGATTGCTCATGTACCA
AATGTCTCATTAGCTCTGATCGTCAGAGAGCCACAGCCGATCGCATCGCA
CTTTTCCGACAACAGGTACGACAAATTTCGGCCGAAGACCGACATCACCG
CCGAGAAAAACGAAAATACAGCAATTTAGACGAAGATGTCAGTTATCTTA
CATCCATGACAACGAAAATTCCATCCCCGAATGCTCACCCACCATCCTTA
CataagatgacgtcatcatcctCCAATCACTGCCCTCCACCACAAGATTC
ACCGTATTATTGGAGCGATGAGAAAACCACACGAAACACGCCTGAAATAC
TTCGAATGATCTTTCCTTTCTACGAACCGGTAGCCTTGAGCTCCATTTCA
CGTGAAAATAATTACGATTTGTTGCAAAGTGTGCTCTCCATCAGCTCTTA
CTTATTGGAAAAACGCCAGTCGTCATCTTCGTATTACCGCCCACCTCATT
CACCTCCACCTCCTCCGCCCTCTTCGTTTTACAAGACTGCGCATGCTTCA
GGACGATGTTGTTCAAGTCCGTACTGTCCAGTCAACTCATACCTAACCCT
TCGCAAGAAATCACCTGAAATTATGCAGCATCTTCCAACACCACCACTGA
CGGCCGTTTCTCCTTCGTACGACCGCTCGGCCCGCTCTGAAAGAAGCGAA
ACAAACCAACCTGTGGCAGAATCGAAACCAAAGAAATTTCGGTTCTCAAC
AGATACTGAACTCCCATATTGTGACGCTTGTCAAAAGTTTGGCATCAAGG
GTGACAAGTTTTGTCCCCTTTGCggcattttattttcaaattgaatgaaG
CAACAGTTGGAGCAGTATCATAACCAAGCAATGATGAACGAACTCAAAGT
CGAACTACCGTTTAACGATGCAACTTCACCCACACCTAGCGGCACCGCAG
CCACGTCACCCACACACGACGCTTCGAAGCAACCCAGCAACAACTCAAGG
GCACCCAAATGCACGCGGTGCCGTAACCACGGAGTTATCAGTGATCTGAG
AGGACATAAACACAAATGCTATTGGAGGGATTGCTCATGTACCAAATGTC
TCATTAGCTCTGATCGTCAGAGAGCCACAGCCGATCGCATCGCACTTTTC
CGACAACAGGTACGACAAATTTCGGCCGAAGACCGACATCACCGCCGAGA
AAAACGAAAATACAGCAATTTAGACGAAGATGTCAGTTATCTTACATCCA
TGACAACGAAAATTCCATCCCCGAATGCTCACCCACCATCCTTACataag
atgacgtcatcatcctCCAATCACTGCCCTCCACCACAAGATTCACCGTA
TTATTGGAGCGATGAGAAAACCACACGAAACACGCCTGAAATACTTCGAA
TGATCTTTCCTTTCTACGAACCGGTAGCCTTGAGCTCCATTTCACGTGAA
AATAATTACGATTTGTTGCAAAGTGTGCTCTCCATCAGCTCTTACTTATT
GGAAAAACGCCAGTCGTCATCTTCGTATTACCGCCCACCTCATTCACCTC
CACCTCCTCCGCCCTCTTCGTTTTACAAGACTGCGCATGCTTCAGGACGA
TGTTGTTCAAGTCCGTACTGTCCAGTCAACTCATACCTAACCCTTCGCAA
GAAATCACCTGAAATTATGCAGCATCTTCCAACACCACCACTGACGGCCG
TTTCTCCTTCGTACGACCGCTCGGCCCGCTCTGAAAGAAGCGAAACAAAC
CAACCTGTGGCAGAATCGAAACCAAAGAAATTTCGGTTCTCAACAGATAC
TGAACTCCCATATTGTGACGCTTGTCAAAAGTTTGGCATCAAGGGTGACA
AGTTTTGTCCCCTTTGCggcattttattttcaaattga
Gene-mRNA-Prot
This mRNA is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
MSTRG.11997MSTRG.11997Clytia hemisphaerica_ch_hm2_pilongene
The following exon feature(s) are a part of this mRNA:
Feature NameUnique NameSpeciesType
MSTRG.11997.1.p1.exon1MSTRG.11997.1.p1.exon1Clytia hemisphaerica_ch_hm2_pilonexon
MSTRG.11997.1.p1.exon2MSTRG.11997.1.p1.exon2Clytia hemisphaerica_ch_hm2_pilonexon
The following polypeptide feature(s) derives from this mRNA:
Feature NameUnique NameSpeciesType
MSTRG.11997.1.p1MSTRG.11997.1.p1-proteinClytia hemisphaerica_ch_hm2_pilonpolypeptide
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0000089_pilongenomesc0000089_pilon:79262..81115 +