MSTRG.11962.3.p1 (mRNA) -

Overview
NameMSTRG.11962.3.p1
Unique NameMSTRG.11962.3.p1
TypemRNA
OrganismClytia hemisphaerica_ch_hm2_pilon (Jellyfish)

Sequence
The following sequences are available for this feature:

mRNA from alignment at sc0000088_pilon:794943..797868-

Legend: exonfive_prime_UTRpolypeptideCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>MSTRG.11962.3.p1 ID=MSTRG.11962.3.p1|Name=MSTRG.11962.3.p1|organism=Clytia hemisphaerica_ch_hm2_pilon|type=mRNA|length=2926bp|location=Sequence derived from alignment at sc0000088_pilon:794943..797868- (Clytia hemisphaerica_ch_hm2_pilon)
AAGAGGTTGAGATTCCTGAGACTGATTTTGTTAGTAACATTTTGTTGTAT
TTTCTCACAGAAAAACAAAAGAAAAAAATATTCCAATAGTTAATCAAAAT
GCCACCACAGACAACAGCAAATACAAAAGGTGGGTATGAAGTGGATTTTG
TCAAAGATTATGATGAGATGGATGACGTCACTTGTTCCATTTGTCTTTTC
GTTCTACGTGAACCGATGCAGTCTGAAAGTTGCGGACATCGATTTTGCAA
AAGTTGTGTTAAAGCTCTAAAGAAAAAGTAAGTGCATTAAATTTAAAGAT
GTCCTAAAAGACTTAAAAGCTTAAATTGGGGAGTTAATTTTTTCAAACAT
TTTTTGACAGCAATAATGATGAGTATACATGCCCCAAAGACCGACGCTCG
ATGAAGGTAAAAGCATGTTTTTTAGGCCTTAAAAGTACCTTTCCCCAGGC
CCTTATTTGCTTCTGAAAACTCCTTCATGTGGTAGAAATGGGATAAATTC
AGGCACTAAAGAAAGAGAAGGAATTTTATTTTTAAGACTTTTTTAAAGAT
TTTTAATAAGAAATTATGTTTTTAAAGAACCATACTTATTAGCTGGGTCT
GGGCAAACTAGACAGATTAATAGATTATTTAGCTAGCATCTTATTAGAGC
ATCAAGATTAGTTAATTTTTTCCGAAAGTTTTAAGAAATAGTGGTTTTTT
TTTCTTAACTTCAGTTGTTCAATGATAAAGGGAAAGAACGAGAGATACTC
AGTCGTATGGTCAAGTGTAGGAACCACAAAGATGGATGTGAGATACATCA
GGAATTGCGTAATCTACAGGTTTTGTATCGAAGCACTTATCTTATTTAAT
ATAACATCCGTCGTCCACATGACTAAAGGTTAAATCTCAAAATAAGTGTC
TTGGAAAATTGGAAATCTTGCAATTCTGTCATCTCTTTGAGATTGGCCTT
TTTTTCATATGAAAGCATCTACTCTCTACATGGAAAAAGGGCAATCTCAG
ACCACCACAGGAAAACTTTAAATTTTGTAAGGTACTAATTTTGAGATTTA
ACCTTTAGTCATGTGAACAACGACATAGAAACATTTTATTTGCGATGGGA
GATTTTCTTGTGTACCCTTTTGTTTTTGTCGAGCAACTATCATTCAAGTC
TTTGTATCCGTTCATTCACTGACGCTGATATATTTTTCTTAGAACCATCT
AAGTACATGCGAATTTCAAGAAGTGCCATGCCGAGTAGAAGAATGCAAAG
AGAAATTTCAAAGACGCTTTTTGGTTGAGCACAACACAGAAGCTTGTCAA
TACAGACTTAAAAGTTGCCCGTTTTGTTTCGAAGATTATGCTTTTTATAC
TGAAAAGGTTCTATACGCTTTTTCTAACTGGAGTCCAAAAATGTCAACCG
CTAAGAGATTTTGTACCCCTTAAATTTATGCACCAGATTTCCCTGGGTCT
TCCTTGATCCCAAAACCTCACTGCCGATGTGTATTGAGTTTTGAAATTAT
CTTAGTTACTGTGTGCTTTAGTTCGTACCTTATTAGTTTATCAGGAGAAG
TTTTATCTCGTGAATACCTTCTGCTGTAGATACTGTACTATGGGTTTTCG
AACGTTAAAGCAGTTACCAAATAATCTTTTTGCTGTTTGTTTTCGTTATT
TTAGGAACATCTGTGCAGTTGCGATATATTTCCACTGTGTTGTGATTTTT
GCACTAAAACAAACATTCCAAGAAATCAGGTATGCTCTTTAACCCTATCT
TAATGGTGGCATTCTCAAAAATTCCAATCCCGTGCCCTTTTATCAGAGGT
GCTCGATATTGAGATATTGTAATAATGAAACGAATCATGTTATTTATTTA
TTTTCATTTCTCTTAGATGAAGTTTCATATCTCAGATGAATGTGTCAAAG
TACCGAAGCCATGCGAATTTGTCCTTTTAGGCTGTCAAAAGCAGGTTTTG
AAACAACGATTTTTATGCATGCTTTGTTCGTCTTTTGTCCAAGCCTGTTT
GCCCAATTATTTTGTTGAGTGGTTTTAAAACTTTTAACAAGCTAGTGAGA
TAAAATGATAAATCTTTGTAATATATACGCGATTTCCAGGCTGGAATCGT
CTCTAAAAAGAAAGGTGACGCAAAACTAAATTTTGGTACTTTAACTTCTA
ACAGTATAGAAACACCCCATCATTTGTTTGATTTAGACGACTATTGACAA
TTCGCTCAAGCACAACAACGATGCCACTCAATACCATTTGTCGCTCGCTC
TAAACAAAATTACTGAACAACAGAATGAAATTATTGCTCTTAAGTCAAAT
CAAGAAAAAATGGCGGTAAATCCCTGCTATTCACTTTTCAAAGATGAGCA
CATTATCCAAATCGATGATTTTCAACGAAAATTCCGCGAAGCTGTATCAG
GCGTGCCAATCAAACGCTACTTTTTTACATCTCGTTTACAGAAAATGACA
ATGTTTATATTTCTAAAAGGACACAACCAAAAATCAGCTGATCATTTATC
TATTTTTTTCAACTGTGCATATGGAAGCTACGATGATCTTGTGGATTGGC
CAATGAATGCCACACTTTATTGGTGTATCTTATACGAAGACGAGCTTCGT
AAATGCAAACGAACTGTAACAAAAGATGGGTACGAAAAGACGGGTGCTTT
TCGGAAGCCAGAAATGAATAAGAAACAAGGGGACTGGGGGATCCCTAAAT
ACGTTTCATGGACTGAAGTTTCAAATCTGGTTGAAAATAATGTCTTACGT
TTACAGGTCAACATTGAACACCATTAAAGATAAGAACCAATCAGAACTAA
GTTCGTATTAATTTCATTCGTTATTTTCTCTTGTAAATTTGCTTCTTTTT
TTTTGACATAATATGACCATGTTTGTAGATCGTTGATAAGTTTTCAAAAC
TTCAAAACTTACCCAGTAGAATACCC

Coding sequence (CDS) from alignment at sc0000088_pilon:794943..797868-

>MSTRG.11962.3.p1 ID=MSTRG.11962.3.p1|Name=MSTRG.11962.3.p1|organism=Clytia hemisphaerica_ch_hm2_pilon|type=CDS|length=6984bp|location=Sequence derived from alignment at sc0000088_pilon:794943..797868- (Clytia hemisphaerica_ch_hm2_pilon)
ACGACTATTGACAATTCGCTCAAGCACAACAACGATGCCACTCAATACCA
TTTGTCGCTCGCTCTAAACAAAATTACTGAACAACAGAATGAAATTATTG
CTCTTAAGTCAAATCAAGAAAAAATGGCGGTAAATCCCTGCTATTCACTT
TTCAAAGATGAGCACATTATCCAAATCGATGATTTTCAACGAAAATTCCG
CGAAGCTGTATCAGGCGTGCCAATCAAACGCTACTTTTTTACATCTCGTT
TACAGAAAATGACAATGTTTATATTTCTAAAAGGACACAACCAAAAATCA
GCTGATCATTTATCTATTTTTTTCAACTGTGCATATGGAAGCTACGATGA
TCTTGTGGATTGGCCAATGAATGCCACACTTTATTGGTGTATCTTATACG
AAGACGAGCTTCGTAAATGCAAACGAACTGTAACAAAAGATGGGTACGAA
AAGACGGGTGCTTTTCGGAAGCCAGAAATGAATAAGAAACAAGGGGACTG
GGGGATCCCTAAATACGTTTCATGGACTGAAGTTTCAAATCTGGTTGAAA
ATAATGTCTTACGTTTACAGGTCAACATTGAACACCATTAAATGAAGTTT
CATATCTCAGATGAATGTGTCAAAGTACCGAAGCCATGCGAATTTGTCCT
TTTAGGCTGTCAAAAGCAGAACCATCTAAGTACATGCGAATTTCAAGAAG
TGCCATGCCGAGTAGAAGAATGCAAAGAGAAATTTCAAAGACGCTTTTTG
GTTGAGCACAACACAGAAGCTTGTCAATACAGACTTAAAAGTTGCCCGTT
TTGTTTCGAAGATTATGCTTTTTATACTGAAAAGTTGTTCAATGATAAAG
GGAAAGAACGAGAGATACTCAGTCGTATGGTCAAGTGTAGGAACCACAAA
GATGGATGTGAGATACATCAGGAATTGCGTAATCTACAGCAATAATGATG
AGTATACATGCCCCAAAGACCGACGCTCGATGAAGATGCCACCACAGACA
ACAGCAAATACAAAAGGTGGGTATGAAGTGGATTTTGTCAAAGATTATGA
TGAGATGGATGACGTCACTTGTTCCATTTGTCTTTTCGTTCTACGTGAAC
CGATGCAGTCTGAAAGTTGCGGACATCGATTTTGCAAAAGTTGTGTTAAA
GCTCTAAAGAAAAAACGACTATTGACAATTCGCTCAAGCACAACAACGAT
GCCACTCAATACCATTTGTCGCTCGCTCTAAACAAAATTACTGAACAACA
GAATGAAATTATTGCTCTTAAGTCAAATCAAGAAAAAATGGCGGTAAATC
CCTGCTATTCACTTTTCAAAGATGAGCACATTATCCAAATCGATGATTTT
CAACGAAAATTCCGCGAAGCTGTATCAGGCGTGCCAATCAAACGCTACTT
TTTTACATCTCGTTTACAGAAAATGACAATGTTTATATTTCTAAAAGGAC
ACAACCAAAAATCAGCTGATCATTTATCTATTTTTTTCAACTGTGCATAT
GGAAGCTACGATGATCTTGTGGATTGGCCAATGAATGCCACACTTTATTG
GTGTATCTTATACGAAGACGAGCTTCGTAAATGCAAACGAACTGTAACAA
AAGATGGGTACGAAAAGACGGGTGCTTTTCGGAAGCCAGAAATGAATAAG
AAACAAGGGGACTGGGGGATCCCTAAATACGTTTCATGGACTGAAGTTTC
AAATCTGGTTGAAAATAATGTCTTACGTTTACAGGTCAACATTGAACACC
ATTAAATGAAGTTTCATATCTCAGATGAATGTGTCAAAGTACCGAAGCCA
TGCGAATTTGTCCTTTTAGGCTGTCAAAAGCAGAACCATCTAAGTACATG
CGAATTTCAAGAAGTGCCATGCCGAGTAGAAGAATGCAAAGAGAAATTTC
AAAGACGCTTTTTGGTTGAGCACAACACAGAAGCTTGTCAATACAGACTT
AAAAGTTGCCCGTTTTGTTTCGAAGATTATGCTTTTTATACTGAAAAGTT
GTTCAATGATAAAGGGAAAGAACGAGAGATACTCAGTCGTATGGTCAAGT
GTAGGAACCACAAAGATGGATGTGAGATACATCAGGAATTGCGTAATCTA
CAGCAATAATGATGAGTATACATGCCCCAAAGACCGACGCTCGATGAAGA
TGCCACCACAGACAACAGCAAATACAAAAGGTGGGTATGAAGTGGATTTT
GTCAAAGATTATGATGAGATGGATGACGTCACTTGTTCCATTTGTCTTTT
CGTTCTACGTGAACCGATGCAGTCTGAAAGTTGCGGACATCGATTTTGCA
AAAGTTGTGTTAAAGCTCTAAAGAAAAAACGACTATTGACAATTCGCTCA
AGCACAACAACGATGCCACTCAATACCATTTGTCGCTCGCTCTAAACAAA
ATTACTGAACAACAGAATGAAATTATTGCTCTTAAGTCAAATCAAGAAAA
AATGGCGGTAAATCCCTGCTATTCACTTTTCAAAGATGAGCACATTATCC
AAATCGATGATTTTCAACGAAAATTCCGCGAAGCTGTATCAGGCGTGCCA
ATCAAACGCTACTTTTTTACATCTCGTTTACAGAAAATGACAATGTTTAT
ATTTCTAAAAGGACACAACCAAAAATCAGCTGATCATTTATCTATTTTTT
TCAACTGTGCATATGGAAGCTACGATGATCTTGTGGATTGGCCAATGAAT
GCCACACTTTATTGGTGTATCTTATACGAAGACGAGCTTCGTAAATGCAA
ACGAACTGTAACAAAAGATGGGTACGAAAAGACGGGTGCTTTTCGGAAGC
CAGAAATGAATAAGAAACAAGGGGACTGGGGGATCCCTAAATACGTTTCA
TGGACTGAAGTTTCAAATCTGGTTGAAAATAATGTCTTACGTTTACAGGT
CAACATTGAACACCATTAAATGAAGTTTCATATCTCAGATGAATGTGTCA
AAGTACCGAAGCCATGCGAATTTGTCCTTTTAGGCTGTCAAAAGCAGAAC
CATCTAAGTACATGCGAATTTCAAGAAGTGCCATGCCGAGTAGAAGAATG
CAAAGAGAAATTTCAAAGACGCTTTTTGGTTGAGCACAACACAGAAGCTT
GTCAATACAGACTTAAAAGTTGCCCGTTTTGTTTCGAAGATTATGCTTTT
TATACTGAAAAGTTGTTCAATGATAAAGGGAAAGAACGAGAGATACTCAG
TCGTATGGTCAAGTGTAGGAACCACAAAGATGGATGTGAGATACATCAGG
AATTGCGTAATCTACAGCAATAATGATGAGTATACATGCCCCAAAGACCG
ACGCTCGATGAAGATGCCACCACAGACAACAGCAAATACAAAAGGTGGGT
ATGAAGTGGATTTTGTCAAAGATTATGATGAGATGGATGACGTCACTTGT
TCCATTTGTCTTTTCGTTCTACGTGAACCGATGCAGTCTGAAAGTTGCGG
ACATCGATTTTGCAAAAGTTGTGTTAAAGCTCTAAAGAAAAAACGACTAT
TGACAATTCGCTCAAGCACAACAACGATGCCACTCAATACCATTTGTCGC
TCGCTCTAAACAAAATTACTGAACAACAGAATGAAATTATTGCTCTTAAG
TCAAATCAAGAAAAAATGGCGGTAAATCCCTGCTATTCACTTTTCAAAGA
TGAGCACATTATCCAAATCGATGATTTTCAACGAAAATTCCGCGAAGCTG
TATCAGGCGTGCCAATCAAACGCTACTTTTTTACATCTCGTTTACAGAAA
ATGACAATGTTTATATTTCTAAAAGGACACAACCAAAAATCAGCTGATCA
TTTATCTATTTTTTTCAACTGTGCATATGGAAGCTACGATGATCTTGTGG
ATTGGCCAATGAATGCCACACTTTATTGGTGTATCTTATACGAAGACGAG
CTTCGTAAATGCAAACGAACTGTAACAAAAGATGGGTACGAAAAGACGGG
TGCTTTTCGGAAGCCAGAAATGAATAAGAAACAAGGGGACTGGGGGATCC
CTAAATACGTTTCATGGACTGAAGTTTCAAATCTGGTTGAAAATAATGTC
TTACGTTTACAGGTCAACATTGAACACCATTAAATGAAGTTTCATATCTC
AGATGAATGTGTCAAAGTACCGAAGCCATGCGAATTTGTCCTTTTAGGCT
GTCAAAAGCAGAACCATCTAAGTACATGCGAATTTCAAGAAGTGCCATGC
CGAGTAGAAGAATGCAAAGAGAAATTTCAAAGACGCTTTTTGGTTGAGCA
CAACACAGAAGCTTGTCAATACAGACTTAAAAGTTGCCCGTTTTGTTTCG
AAGATTATGCTTTTTATACTGAAAAGTTGTTCAATGATAAAGGGAAAGAA
CGAGAGATACTCAGTCGTATGGTCAAGTGTAGGAACCACAAAGATGGATG
TGAGATACATCAGGAATTGCGTAATCTACAGCAATAATGATGAGTATACA
TGCCCCAAAGACCGACGCTCGATGAAGATGCCACCACAGACAACAGCAAA
TACAAAAGGTGGGTATGAAGTGGATTTTGTCAAAGATTATGATGAGATGG
ATGACGTCACTTGTTCCATTTGTCTTTTCGTTCTACGTGAACCGATGCAG
TCTGAAAGTTGCGGACATCGATTTTGCAAAAGTTGTGTTAAAGCTCTAAA
GAAAAAACGACTATTGACAATTCGCTCAAGCACAACAACGATGCCACTCA
ATACCATTTGTCGCTCGCTCTAAACAAAATTACTGAACAACAGAATGAAA
TTATTGCTCTTAAGTCAAATCAAGAAAAAATGGCGGTAAATCCCTGCTAT
TCACTTTTCAAAGATGAGCACATTATCCAAATCGATGATTTTCAACGAAA
ATTCCGCGAAGCTGTATCAGGCGTGCCAATCAAACGCTACTTTTTTACAT
CTCGTTTACAGAAAATGACAATGTTTATATTTCTAAAAGGACACAACCAA
AAATCAGCTGATCATTTATCTATTTTTTTCAACTGTGCATATGGAAGCTA
CGATGATCTTGTGGATTGGCCAATGAATGCCACACTTTATTGGTGTATCT
TATACGAAGACGAGCTTCGTAAATGCAAACGAACTGTAACAAAAGATGGG
TACGAAAAGACGGGTGCTTTTCGGAAGCCAGAAATGAATAAGAAACAAGG
GGACTGGGGGATCCCTAAATACGTTTCATGGACTGAAGTTTCAAATCTGG
TTGAAAATAATGTCTTACGTTTACAGGTCAACATTGAACACCATTAAATG
AAGTTTCATATCTCAGATGAATGTGTCAAAGTACCGAAGCCATGCGAATT
TGTCCTTTTAGGCTGTCAAAAGCAGAACCATCTAAGTACATGCGAATTTC
AAGAAGTGCCATGCCGAGTAGAAGAATGCAAAGAGAAATTTCAAAGACGC
TTTTTGGTTGAGCACAACACAGAAGCTTGTCAATACAGACTTAAAAGTTG
CCCGTTTTGTTTCGAAGATTATGCTTTTTATACTGAAAAGTTGTTCAATG
ATAAAGGGAAAGAACGAGAGATACTCAGTCGTATGGTCAAGTGTAGGAAC
CACAAAGATGGATGTGAGATACATCAGGAATTGCGTAATCTACAGCAATA
ATGATGAGTATACATGCCCCAAAGACCGACGCTCGATGAAGATGCCACCA
CAGACAACAGCAAATACAAAAGGTGGGTATGAAGTGGATTTTGTCAAAGA
TTATGATGAGATGGATGACGTCACTTGTTCCATTTGTCTTTTCGTTCTAC
GTGAACCGATGCAGTCTGAAAGTTGCGGACATCGATTTTGCAAAAGTTGT
GTTAAAGCTCTAAAGAAAAAACGACTATTGACAATTCGCTCAAGCACAAC
AACGATGCCACTCAATACCATTTGTCGCTCGCTCTAAACAAAATTACTGA
ACAACAGAATGAAATTATTGCTCTTAAGTCAAATCAAGAAAAAATGGCGG
TAAATCCCTGCTATTCACTTTTCAAAGATGAGCACATTATCCAAATCGAT
GATTTTCAACGAAAATTCCGCGAAGCTGTATCAGGCGTGCCAATCAAACG
CTACTTTTTTACATCTCGTTTACAGAAAATGACAATGTTTATATTTCTAA
AAGGACACAACCAAAAATCAGCTGATCATTTATCTATTTTTTTCAACTGT
GCATATGGAAGCTACGATGATCTTGTGGATTGGCCAATGAATGCCACACT
TTATTGGTGTATCTTATACGAAGACGAGCTTCGTAAATGCAAACGAACTG
TAACAAAAGATGGGTACGAAAAGACGGGTGCTTTTCGGAAGCCAGAAATG
AATAAGAAACAAGGGGACTGGGGGATCCCTAAATACGTTTCATGGACTGA
AGTTTCAAATCTGGTTGAAAATAATGTCTTACGTTTACAGGTCAACATTG
AACACCATTAAATGAAGTTTCATATCTCAGATGAATGTGTCAAAGTACCG
AAGCCATGCGAATTTGTCCTTTTAGGCTGTCAAAAGCAGAACCATCTAAG
TACATGCGAATTTCAAGAAGTGCCATGCCGAGTAGAAGAATGCAAAGAGA
AATTTCAAAGACGCTTTTTGGTTGAGCACAACACAGAAGCTTGTCAATAC
AGACTTAAAAGTTGCCCGTTTTGTTTCGAAGATTATGCTTTTTATACTGA
AAAGTTGTTCAATGATAAAGGGAAAGAACGAGAGATACTCAGTCGTATGG
TCAAGTGTAGGAACCACAAAGATGGATGTGAGATACATCAGGAATTGCGT
AATCTACAGCAATAATGATGAGTATACATGCCCCAAAGACCGACGCTCGA
TGAAGATGCCACCACAGACAACAGCAAATACAAAAGGTGGGTATGAAGTG
GATTTTGTCAAAGATTATGATGAGATGGATGACGTCACTTGTTCCATTTG
TCTTTTCGTTCTACGTGAACCGATGCAGTCTGAAAGTTGCGGACATCGAT
TTTGCAAAAGTTGTGTTAAAGCTCTAAAGAAAAA
Gene-mRNA-Prot
This mRNA is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
MSTRG.11962MSTRG.11962Clytia hemisphaerica_ch_hm2_pilongene
The following polypeptide feature(s) derives from this mRNA:
Feature NameUnique NameSpeciesType
MSTRG.11962.3.p1MSTRG.11962.3.p1-proteinClytia hemisphaerica_ch_hm2_pilonpolypeptide
The following exon feature(s) are a part of this mRNA:
Feature NameUnique NameSpeciesType
MSTRG.11962.3.p1.exon6MSTRG.11962.3.p1.exon6Clytia hemisphaerica_ch_hm2_pilonexon
MSTRG.11962.3.p1.exon5MSTRG.11962.3.p1.exon5Clytia hemisphaerica_ch_hm2_pilonexon
MSTRG.11962.3.p1.exon4MSTRG.11962.3.p1.exon4Clytia hemisphaerica_ch_hm2_pilonexon
MSTRG.11962.3.p1.exon3MSTRG.11962.3.p1.exon3Clytia hemisphaerica_ch_hm2_pilonexon
MSTRG.11962.3.p1.exon2MSTRG.11962.3.p1.exon2Clytia hemisphaerica_ch_hm2_pilonexon
MSTRG.11962.3.p1.exon1MSTRG.11962.3.p1.exon1Clytia hemisphaerica_ch_hm2_pilonexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0000088_pilongenomesc0000088_pilon:794943..797868 -