MSTRG.11895.1.p1 (mRNA) -

Overview
NameMSTRG.11895.1.p1
Unique NameMSTRG.11895.1.p1
TypemRNA
OrganismClytia hemisphaerica_ch_hm2_pilon (Jellyfish)

Sequence
The following sequences are available for this feature:

mRNA from alignment at sc0000088_pilon:105..3293+

Legend: exonpolypeptideCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>MSTRG.11895.1.p1 ID=MSTRG.11895.1.p1|Name=MSTRG.11895.1.p1|organism=Clytia hemisphaerica_ch_hm2_pilon|type=mRNA|length=3189bp|location=Sequence derived from alignment at sc0000088_pilon:105..3293+ (Clytia hemisphaerica_ch_hm2_pilon)
GGTGCATCACCATAGGAGCTGTCACTTCCATTCTTCTCATCTATGAGGAA
AAAGTTGGTCGAAGTGAAGTCAGCTCTTTTGTTATTCTAGCTGGACTTCC
TTTCGCTTTGCTACTATGTTTTTCAGCTATTTCGATTTGGCGGTAAGTta
ctcttaaaggttttgtttttatattcatgatattcacgacgtaatgtttt
ttacggaaataccccggtttatgccagtagtggcaaatgttatgcaactt
ttgtctagtttaaatttgccactactggctaaaactggGGTGGAAAACAT
TACGCCATGAAgtgtgatatcgtttgcttactcatcaattttgattcaca
agcttttgCACATTAAACTGaaatggatgtggagcaagattggccagaaa
gTTTTCActtagttttttcattgattttacaATTGAGCTAACAAGTGACT
TTGAAGATattgaagttgagccagtgcggttagcacgtttaATAGTTTAT
ACCTTCccgaaaaatgaatttttgcgaaattctcTCGTAcctttattaca
tttttttttgtcgGTCGCGATCTCTTTGTCAATTGATGGAACCCCACGAT
AaccacaatcatggtcgaaatttATTGAGTATTTAGTGTATttaaacgtt
tttcagaatttaaagttcgggcaagaattgctattttaacacttcaactt
ttttcactgaatatttcgattttggaggggttggatagcttctaggctat
attccaaaccttattggagcaaatttgagcttttaaatcctgataTCCTA
GGCTCCCAAAGTTTTAAGTCTtatgtggtgtttaaaatttcgcagggaaa
ttCCCATTGTCTCAAACATTTTGTCTATGATTGCAGATTTTGATTCTCCG
ttcaatttgaattttcagTATTAGCGTTGATTTGATATTCGTACTTCTCC
ACAAAATTTAGATTATTGAAACTGGAACCCTACTGGCGTTACGATACAGT
TAAACACTGGAGAATGCTTTATGGCAATATCAAATCTGGCCGGCTCTTAA
AAGATGTCCTTATAGCAACTTTAGCTCCATGGTATTACCTTGGTCAAATT
GCAATTCGTGAGGGAAAGAAAACCAAGGAAGCTGACCAAcAcccaaaTaa
gttCttcaaataTtttcaattcGttttaccattttatttAtggattttcC
TATTGTTCTTACATATTGGTTTTAATTACGTCAATTATATTGGATGGACT
TTCTTCATTGGTTTTGTAATATTGGCAAGCCGATTACGAACAGGATTGCG
TCACCGACATGGTATCCAGGGCAACGTCATTGAAGATATCGCCATCTTGG
TGATTTATCCATTCACTGTGGTACAAATGAATGAGCAGGTCTGTATTACA
CCAGTATTATCTCTAATAACGgtgagattatgtatctggaattctctaca
gCTACGGTtaaagtggcgagggaaatggcgagtaaggcaagtaatggcgg
gtgaaatcAACTTCATTATTTGACGTACgacattatgtcgactttgctta
tacggtgttttggtcTTTTTCCCGTACatagcaaagtagacaacgacatg
tcgcgtttggtgacgacccgcatGGGCAGCCCCGTAACCGTAGCCGTTGA
CTATCTCCGATACAAAATATCTCTAACGTTTCAAGGGAGGTTGGGTTCTA
GTTTAACAGAGTAGTATGACGTCATATATCTCTACTGCTACAGTGAGTAT
CACATTTCgggctttctttgaaaaagaaGCCAAGATCGTAAAAGCATGTA
AATTTTTTGTACCGGCATCAATTTGCCAGCAATCCAGTCTGTTCAagtaa
agaatcctgcattataacacgcatgcgtataatttgtcgttcttttaacc
GTATGTTAATCTTTGTAATAAGCAAAGAAGAATCAATTCGGAGGGGTGGA
CAAACTAACcaggtcggggttgtggacggcgaaatttatcgttctttttg
tctatttttcttTAGTAAATGTAGCATTCTTTAGATTAACCCCCTTcaat
ccactgacctttatatatcccagGACCAAGGTATATcagccatctttgat
tggagtttttttggaattggtacccgagaagaagccattgaaATGTTAGA
AATTAAAACGTCTAACGGCGTTAcattaacaaagatatttgagggaaagt
agatctagcgctctcgatgcatttacaccgttattgagtagtgccgccat
tagggtaccacttttcaaaaaactccgatcaaagattttgctttgccggg
attgagaaacttggtccagggtatataaaggtcaatgCTTCAACCTCTTG
CTTGATATTTTCAGATTGCAGTACGTGAATCTAATCGTGGGCAAGGTGCT
CCAAATCAAGCTTATGAGGAGACTAATGTTAACGACGCTGGAAGTGAAGG
GAATGTATTTCCAGAAATCGAAGAAGAAGTTCAGGCTTGAGAATTGGagg
aattgaaataaaaatgcatTATTACCCGGACACAAGTATCGTTAATTGGA
CGTTGAAGTCACGTTAATTGGACGTTATGGCACAAGTAACGTTAATTGGA
CGTTCAAGTAACGTTCATTGGACGTTCAAGTAACGTTGATTGGACGTTAT
GGCACAAGTATCGTTAATTGGACGTTTAAGTAATGTTAATTGGACGTTAT
GGCACAAATATCGTTGATTGGACGTTCAAGTAACGTTGATTGGACGTTAT
GGCACAAGTATCGTTGATTGGACGTCCAAGTAACGTTAATTTGACGTTAT
GGCACAAATGACGTTAAATGGACATTATGGATGTCAAATGGACGGTGTtt
taacgttgtgtgccggctggaaTGTATCTTAGTATTTAAACGTTAAAATT
CTTAGCTATGATGATCGTAGTAATAACAAAagtatgaaattaaaaaaagg
cgAAATGGCAGAGCTGAACCAAGAAGCTCATGAACTTGAAAGATGTAATA
TTTTAATTCTGAATTTCATGGATGATTTGACAAATCAAAAGCGAATGAGT
TCGAAGTGGGATCTGGAAGGTTTATGATATTGGCTGAGATCAGTTTCAAA
AATGAAAGggggttttgtgacattttctaTGTTTGAACTTTGGACAGCTG
TACAAGTGACAAATTTAGgcttactttgtttttttttcg

Coding sequence (CDS) from alignment at sc0000088_pilon:105..3293+

>MSTRG.11895.1.p1 ID=MSTRG.11895.1.p1|Name=MSTRG.11895.1.p1|organism=Clytia hemisphaerica_ch_hm2_pilon|type=CDS|length=2079bp|location=Sequence derived from alignment at sc0000088_pilon:105..3293+ (Clytia hemisphaerica_ch_hm2_pilon)
TGCATCACCATAGGAGCTGTCACTTCCATTCTTCTCATCTATGAGGAAAA
AGTTGGTCGAAGTGAAGTCAGCTCTTTTGTTATTCTAGCTGGACTTCCTT
TCGCTTTGCTACTATGTTTTTCAGCTATTTCGATTTGGCGATTATTGAAA
CTGGAACCCTACTGGCGTTACGATACAGTTAAACACTGGAGAATGCTTTA
TGGCAATATCAAATCTGGCCGGCTCTTAAAAGATGTCCTTATAGCAACTT
TAGCTCCATGGTATTACCTTGGTCAAATTGCAATTCGTGAGGGAAAGAAA
ACCAAGGAAGCTGACCAAcAcccaaaTaagttCttcaaataTtttcaatt
cGttttaccattttatttAtggattttcCTATTGTTCTTACATATTGGTT
TTAATTACGTCAATTATATTGGATGGACTTTCTTCATTGGTTTTGTAATA
TTGGCAAGCCGATTACGAACAGGATTGCGTCACCGACATGGTATCCAGGG
CAACGTCATTGAAGATATCGCCATCTTGGTGATTTATCCATTCACTGTGG
TACAAATGAATGAGCAGATTGCAGTACGTGAATCTAATCGTGGGCAAGGT
GCTCCAAATCAAGCTTATGAGGAGACTAATGTTAACGACGCTGGAAGTGA
AGGGAATGTATTTCCAGAAATCGAAGAAGAAGTTCAGGCTTGATGCATCA
CCATAGGAGCTGTCACTTCCATTCTTCTCATCTATGAGGAAAAAGTTGGT
CGAAGTGAAGTCAGCTCTTTTGTTATTCTAGCTGGACTTCCTTTCGCTTT
GCTACTATGTTTTTCAGCTATTTCGATTTGGCGATTATTGAAACTGGAAC
CCTACTGGCGTTACGATACAGTTAAACACTGGAGAATGCTTTATGGCAAT
ATCAAATCTGGCCGGCTCTTAAAAGATGTCCTTATAGCAACTTTAGCTCC
ATGGTATTACCTTGGTCAAATTGCAATTCGTGAGGGAAAGAAAACCAAGG
AAGCTGACCAAcAcccaaaTaagttCttcaaataTtttcaattcGtttta
ccattttatttAtggattttcCTATTGTTCTTACATATTGGTTTTAATTA
CGTCAATTATATTGGATGGACTTTCTTCATTGGTTTTGTAATATTGGCAA
GCCGATTACGAACAGGATTGCGTCACCGACATGGTATCCAGGGCAACGTC
ATTGAAGATATCGCCATCTTGGTGATTTATCCATTCACTGTGGTACAAAT
GAATGAGCAGATTGCAGTACGTGAATCTAATCGTGGGCAAGGTGCTCCAA
ATCAAGCTTATGAGGAGACTAATGTTAACGACGCTGGAAGTGAAGGGAAT
GTATTTCCAGAAATCGAAGAAGAAGTTCAGGCTTGATGCATCACCATAGG
AGCTGTCACTTCCATTCTTCTCATCTATGAGGAAAAAGTTGGTCGAAGTG
AAGTCAGCTCTTTTGTTATTCTAGCTGGACTTCCTTTCGCTTTGCTACTA
TGTTTTTCAGCTATTTCGATTTGGCGATTATTGAAACTGGAACCCTACTG
GCGTTACGATACAGTTAAACACTGGAGAATGCTTTATGGCAATATCAAAT
CTGGCCGGCTCTTAAAAGATGTCCTTATAGCAACTTTAGCTCCATGGTAT
TACCTTGGTCAAATTGCAATTCGTGAGGGAAAGAAAACCAAGGAAGCTGA
CCAAcAcccaaaTaagttCttcaaataTtttcaattcGttttaccatttt
atttAtggattttcCTATTGTTCTTACATATTGGTTTTAATTACGTCAAT
TATATTGGATGGACTTTCTTCATTGGTTTTGTAATATTGGCAAGCCGATT
ACGAACAGGATTGCGTCACCGACATGGTATCCAGGGCAACGTCATTGAAG
ATATCGCCATCTTGGTGATTTATCCATTCACTGTGGTACAAATGAATGAG
CAGATTGCAGTACGTGAATCTAATCGTGGGCAAGGTGCTCCAAATCAAGC
TTATGAGGAGACTAATGTTAACGACGCTGGAAGTGAAGGGAATGTATTTC
CAGAAATCGAAGAAGAAGTTCAGGCTTGA
Gene-mRNA-Prot
This mRNA is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
MSTRG.11895MSTRG.11895Clytia hemisphaerica_ch_hm2_pilongene
The following exon feature(s) are a part of this mRNA:
Feature NameUnique NameSpeciesType
MSTRG.11895.1.p1.exon1MSTRG.11895.1.p1.exon1Clytia hemisphaerica_ch_hm2_pilonexon
MSTRG.11895.1.p1.exon2MSTRG.11895.1.p1.exon2Clytia hemisphaerica_ch_hm2_pilonexon
MSTRG.11895.1.p1.exon3MSTRG.11895.1.p1.exon3Clytia hemisphaerica_ch_hm2_pilonexon
The following polypeptide feature(s) derives from this mRNA:
Feature NameUnique NameSpeciesType
MSTRG.11895.1.p1MSTRG.11895.1.p1-proteinClytia hemisphaerica_ch_hm2_pilonpolypeptide
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0000088_pilongenomesc0000088_pilon:105..3293 +