MSTRG.11870.1.p1 (mRNA) -

Overview
NameMSTRG.11870.1.p1
Unique NameMSTRG.11870.1.p1
TypemRNA
OrganismClytia hemisphaerica_ch_hm2_pilon (Jellyfish)

Sequence
The following sequences are available for this feature:

mRNA from alignment at sc0000087_pilon:1013999..1015076+

Legend: five_prime_UTRexonpolypeptideCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>MSTRG.11870.1.p1 ID=MSTRG.11870.1.p1|Name=MSTRG.11870.1.p1|organism=Clytia hemisphaerica_ch_hm2_pilon|type=mRNA|length=1078bp|location=Sequence derived from alignment at sc0000087_pilon:1013999..1015076+ (Clytia hemisphaerica_ch_hm2_pilon)
TAATTTAGTGAATTGCCAccaaatacccccccccccgcaccAATTTTCTC
TTGTTCAAGACCCCGTGCACCTATCGTATCaaaaaaaacttgatatttat
agagcgtgaaaaataaaaaaaagtgaataaaaaattattgtcTGGTGTAT
AAAAGTGAGAACAACCACTAGATTTAAATAATCACAATACAACCATAACA
ATCTTAACTTTAGAAAATCCTACTACTTATCTGGAAATTGCCCCAACCTG
CAAAATGTATAATCGACCATTACTGAGTACAATTTTGCTGATCCTACCGA
CATTGAATCTTGCATGCAACTTCACCGAGATTGATCCTATCACACCAGTA
CACAAACCCCTTCAACTGACTATCCACACAACTGGATTTGTAACGAGAAA
CTTGTTGGGCGACCcgctaaaatatttcaaatcacTTCCAGAGAAATTGG
TTTACAAAAAAGAAGCAAAACCAGGGGTTATGGATAGTATTCTTCTTTCC
CTTCCGGTTGGTTTAATTTGCACAATTAACGTGTACTTGAGTGGAACTAA
AAACATTTCCTTTGCTTATAACTTTGTCGAAGACTATCGTGGGGATGTCA
CAAAACCGATTTGCACTCGAATAAAATACACGTACGAGCTCAATCAAACT
CAAGATTTTGTCTATTCTAAAGCATTTGCAGGGGATCATAGACATATCAG
AACATATTATATTCTAAAATTTAAACTAGAAGATATGAAATCATCAGGCT
GTTACAGAAATGTTCCTCAGTCATTTATTCTCCTAGGATTTAACCTGTTT
GTAATTTGTTTTTGTGTCTTTTAACCCTCTTTAGACGTATGCCGAATCTG
TTAACATTGTGGTAGGAGTAACAACGTGATGGGTTGGCAAAAGCTGGCGA
GGCGATTTTGTAGTTAAAAAACTATTATTTTAAGgcccaatagacctttt
cataaattacgccacgaacatcacttgcctcgtattgaAACAATcaccat
ggtgattatatcccttAAGACaataaccctttaagtgccaatatTGTATa
catcagacatgggctatgtaggagggcg

Coding sequence (CDS) from alignment at sc0000087_pilon:1013999..1015076+

>MSTRG.11870.1.p1 ID=MSTRG.11870.1.p1|Name=MSTRG.11870.1.p1|organism=Clytia hemisphaerica_ch_hm2_pilon|type=CDS|length=570bp|location=Sequence derived from alignment at sc0000087_pilon:1013999..1015076+ (Clytia hemisphaerica_ch_hm2_pilon)
ATGTATAATCGACCATTACTGAGTACAATTTTGCTGATCCTACCGACATT
GAATCTTGCATGCAACTTCACCGAGATTGATCCTATCACACCAGTACACA
AACCCCTTCAACTGACTATCCACACAACTGGATTTGTAACGAGAAACTTG
TTGGGCGACCcgctaaaatatttcaaatcacTTCCAGAGAAATTGGTTTA
CAAAAAAGAAGCAAAACCAGGGGTTATGGATAGTATTCTTCTTTCCCTTC
CGGTTGGTTTAATTTGCACAATTAACGTGTACTTGAGTGGAACTAAAAAC
ATTTCCTTTGCTTATAACTTTGTCGAAGACTATCGTGGGGATGTCACAAA
ACCGATTTGCACTCGAATAAAATACACGTACGAGCTCAATCAAACTCAAG
ATTTTGTCTATTCTAAAGCATTTGCAGGGGATCATAGACATATCAGAACA
TATTATATTCTAAAATTTAAACTAGAAGATATGAAATCATCAGGCTGTTA
CAGAAATGTTCCTCAGTCATTTATTCTCCTAGGATTTAACCTGTTTGTAA
TTTGTTTTTGTGTCTTTTAA
Gene-mRNA-Prot
This mRNA is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
MSTRG.11870MSTRG.11870Clytia hemisphaerica_ch_hm2_pilongene
The following exon feature(s) are a part of this mRNA:
Feature NameUnique NameSpeciesType
MSTRG.11870.1.p1.exon1MSTRG.11870.1.p1.exon1Clytia hemisphaerica_ch_hm2_pilonexon
The following polypeptide feature(s) derives from this mRNA:
Feature NameUnique NameSpeciesType
MSTRG.11870.1.p1MSTRG.11870.1.p1-proteinClytia hemisphaerica_ch_hm2_pilonpolypeptide
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0000087_pilongenomesc0000087_pilon:1013999..1015076 +