MSTRG.11846.1.p1 (mRNA) -

Overview
NameMSTRG.11846.1.p1
Unique NameMSTRG.11846.1.p1
TypemRNA
OrganismClytia hemisphaerica_ch_hm2_pilon (Jellyfish)

Sequence
The following sequences are available for this feature:

mRNA from alignment at sc0000087_pilon:677413..683301-

Legend: exonfive_prime_UTRpolypeptideCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>MSTRG.11846.1.p1 ID=MSTRG.11846.1.p1|Name=MSTRG.11846.1.p1|organism=Clytia hemisphaerica_ch_hm2_pilon|type=mRNA|length=5889bp|location=Sequence derived from alignment at sc0000087_pilon:677413..683301- (Clytia hemisphaerica_ch_hm2_pilon)
ATCACACAGAACAATGATCAGATTTCAAACTTTGATTTGATAAAACGTAC
TAATAGGATTTATATCAAGTTTCTATCTTTAACTTCAGACAGTAAGAAAT
TCGAAACTGTAGAAAAAACAAATGAACGATGACTGATGTGGAGAAAACTG
CCGATTTGAATTTCAAGCGAATAATAAATCAAAATGAAGATTTCCAGCAG
TTGAACATAGAAGTGAACAAAGGATTATGGATCTTTGGTTATGGCTCGTT
GTTGTGGAAAGTTAACTTTGAATACGAAAAAGACTTGTTTGGTACCATCA
AAGGATTTGCGCGAAGGTTTTGGCAAGAAAGTACTGATCATCGAGGAACT
ACTCAATTTGTAAGTTCTTGATTTAAACTTTAATCTCTAACTTTTCATGA
CTACGCTTTTTTATAAGCACCTCCGATTTCGGGTTAGCCTTGGGGTTGGT
TAGCATTTTAGCTCATTTTTTGTTAAAAATTGCTCTGACTCATACCCCTG
ATATTAAACCATATTCATTTTTAGTGGGTCAGGGCTATCGTTTCTATATC
CCCTATATAAATTCTGATTCATTTAAACGAGCTAAAATGCAAAAACAACT
TCAGCCCTGAGCCCGAAATCGGGGTGTATTACACGCTTTTTTTATAAGAA
TGGTGTAAATCCATTTCATCATAGATATTCTTAATTTTTTTGGAAAAATA
TCATCCTAAAATATTCTTACAACATTCTTAGGTCCTAATTCAAACTAGAT
TTAACATTTAATACATACGTCTCAAAATATGGTGATATTCTTTGTACATT
CTTAGTTTTTTTTACCATTTTCATCATGGACATTCTTATAAAGTGTATTC
TTATAAAAAAAAGCGTGTAGTGTATATACAATATCAATATCGAAGACTTC
ACCAGTACAACCTTAATTCCATATAAATGTTTTTTCCAAACCCCCCTTCT
CAATTTTGCGATTAACGTTCAATTATTGTTTCAATCTTTTTTAGCCTGGA
AGGGTTGTAACACTGGTTCCAAGAGAAGATGTAAGAGTTCAGTATTTCAC
CATTTGTCCCACCATAAATTTGTAGTCCATTGTTTTAAGTGTGCTTTAAG
AAAAACAATCTCGAGGAAATTGGTCTAACTACTTTAATCGTAGAAATTTT
AGCGAGACTAATTTTAGCGTTTTAGCGAGTTTTCCCTATTTTCGCTAAAA
TAAATCTCGCTAAAACACGCCGAATCGACAGATCGCTAAAATTTATCCAC
GCGAAATTTCTGGCTATATTGCCTTGATATATTTTTATCAATAGGAAGGG
TTTCAGTGCAAAGAAATGCTAGAAAACGAATTAAATCAATAATTTAATAC
GAGTATTCGCTAAAATTTATCCACGCGAAATTTTTTGAAATCGTGATTTG
TTAAAATAAATCCAAAAGAAGTAAGATTTTCCTGACTCGCTAATATACGC
TAAAATTAGTCTCGCTAAAATTTCTACGATTAAAGTATACTGGTGTGATG
TGGTTTGACGCATTGCATGAGTACACTTAAAACAATTGGAGGGTTTGCAT
TGATGGGCTTAATAGAATGGGTGCATCCAAAGAAGTTTAGGTTCTATACT
CTTTATGGAGCTACAATTCACCTGGTAAGTGAATTTATTTTCACCTGGGT
CAACCCATACCATTCGACAGAGGAATAATTTGCCACTTTGATACAAGAGT
CTTATTGGTTAATGTTCCAGGTACCGGGTGACCCACGAAAAAGCATAAGA
GTTTGGAGGGTAACTGTGTCCGAAAAAATTGAATTTTAACTAAACTCTTT
TTTCATGGTAAAGAGGAAAGGCAAACTTGAATTTTGATGTATCATTTTTT
TATTTTGGAAAAGTAGTTATCGAGATATGGAGGTATAAAGTCAAAAGTCA
TTATTAAAAACAGTTAAAAAACGTCAGAAAAGACAGTATCAAATTTGTAT
CAGAACAAACATCTTTCCTTTGATCATTTGCTATTTCATTGTCTTAAAAG
TTTCGTTAAGAAACAAACATAAGTAATATCGAATTTTGGACAAAAATAAA
AGGTACCAAAAGTAGCAAAAAGAGTTTTTAACCTTTGTTATTCTTTTCTG
AATCCTTTCGGTAAAAGAAATCAAAATATGCTTCTCACTCGATGTCCCTT
TTTACCTTATTACATGAAAATAAATATAGAAGTTTTTAATGGCCTTAAAA
TTAACACGCAAAAAATTAACACGAATTTTATTTGCTTTTTTAAGGACACC
ACGGCTGGTTCTAATTAAGGGTTTTTTTATTCACACGAAATTTTTCAATT
CGTATTTTCATGCAATAAGGTATTTGTTAAAGTCTGTCTCGAAATAATTT
GCAGCTGGAGACAAAAATGGCTGTAACTTTTGATAGAATTCGAATCAAGT
TGCGATTAAGTGCTTGTTAAAAAGATATTCGTGAGTGGAATATTATCAAG
TAAAAAAAATGAGAAAAGAAAGGAAAATGAAAATGAAAAATGAAGAAGAA
AAAAATCAACTTTTTGTAGAAATGTGGTATAATTACCATTTTCACAGGAG
TGACTCTTCAATCTTAGATCATCATCAATGTGAAAAAACTTTTCAAAAAT
ATTCATTCAATCAAAAGATATCAAACAAAGTTTATTGCTGGTTGACTCTA
AAAAATAGTAAAAACTGGTAAAAAACGACAAAAAAACAGCCTTTTGTCGA
TCAACCAGCAATAAACTTTGTTTGATATCTTTTGATTGAATGAATATTTT
TGAAAAGTTTTTTCACATTGATGATGATCTAAGATTGAAGAGTCACTCCT
GTGAAAATGGTAATTATACCACATTTCTACAAAAAGTTGATTTTTTTCTT
CATTTTTCATTTTCATATTCCTTTTTTTTCTCAATTTTTTTACTTGATAA
TATCCCACTCACGAATATCCTTTTTAACGAGCACAAAATCGCAACTTGAT
TCGAATTCTATCAAAGGTTACAGCCATTTTTTTCTCCAGCTGCAAATTAT
TTCGAGACAGACTTTAATCAATTAATTTGATACTGTTTTTTGACGTTTTT
TAACTGTTTTTTATAATGACTTTATGCCTCCATATCTCGATAACTACTTT
TCTAAAATTAAAAAATGATACATCAAAATTTAAGTTTGCCTTTCCTCTTT
ACCATGAAAAAAGAATTTAGTTAAAATTCAATTTTTTTCGGACACAGTTA
CTCTCCAAACTCTTATACTTTTTCGTGGTATCAATAAAGATATAAAGTTA
CACCCGCTTCAGTTTTGGTGTATGCCAACCTCGTTCCCATGACGATTTGC
TTTTTATATAGAATGTAGCAAATTCGATTCGATACGACCATCAAAATTAT
AAAAAAGTGAGAATCAGGCCTTAGGAAAGAGGCTGGGTACATGCCTTTTT
GCAAGAACCAGTAAATTTTTACTCAGGTTTGGCTCTTCTTTATTTTTTGG
AAGTTTTAGGCTTATTTGTTCTTACGATGTTCTTAATACGCTTAGTTTCT
TTACTTAAAAAGGGTTTAAAATCTGTTAAAATCATTAGAATCTCAGTAAT
TTCTGAAATCTTAAGCTCAGATTGTTTAAGCCGATTTCAAACTTTCTACC
TATTTTTTGAATTTTTTTTTTTGATATAATTCCACTCCTTTTTGGACCTA
CCTCCGGGTACCCCGGTGGAGGTTCTATAAATTAACCCATGTCCGTCCGT
TCGTTCGTTCGTTCGTCCGTCCGTCTGTTACCAGCTTTTCTCAGGATTGG
CTCATTAGTTTTTTCTGATTTTTTGCACAATGATGCAAAATGACAATGTC
CAGAACGTGACGGAGCTCGATTTTTGAGAAAAAATTTATTTGGGCAAATT
TGGGCCAAAAACTGCCTAAAAATAGGGTTTTTTGGACTTTGTGCAAAATC
CTGTCATTACTTTTTTCTGATTTCTTGTACAAAGATGGAGGGCAAGAATC
TCTAAAGAATGGCTGAAGTGGTTTTTCCCGGAAAATTCTTATTCGCCTTA
AAAAACGGATTTTCCGTATTTTGGGGAAATTCCCTGTAACCAAATAAGAA
AATATAGCTCTTCTCAATGTTGACTCATTATTTTTTTCTGATTTTTTGCA
CAATGATGCAAAATGGCAATGCCTAAAATGTGTCGGAGCCCGATTTCCGA
AAAAAAATATATTTGGGCCAAAAACTGCCTAAAAATAGGGTTTTTTGGAC
TTTGTGCAAAATCCTGTCTTTACTTTTTTCTGATTTTTTGTACAAAGATG
GAGGACAAGATTCTCTAAAGAATGGCTGAAGTGGTTTTTCCTGGAAAATT
CTTATTCGCCTTAAAAGACAGATTTTCGTATTTTGGGGAAATTCCCTTTA
ACCAAATAAGAAAACATAGCTTTTCTCAATGTTGACTCATAATTTTTTTC
TGATTTTTTGCACAATGATGCAAAATGGCAATGCCCAAAATGTGACGGAG
CCAGATTTTTAAGGAAAATTATTTTGGGCAAATTTGGGCCAAAAACAGCT
TAAAAGGTTTTTTGGGCCTGAATGGTTTAAGTGATTTTCGTATTTGGGGA
AATTCCTTTTTACCATTTTACATTATTCAACACACAAGCTTTATTTTTCC
ATTCTGAATTTTTGTACAATTATTGTCACTTTTTTCTTATTTTCATCTGA
TGTTAATCATTAGGTAGGTCCATTCAGCATGTTGCTTGTTGTCTTTTCAA
CGAGTACAAAACCGCAAATTCGAATATCCACTCCTGTTTGTCTTTTCAAC
GAGCACAAAACCGCAAATTCGAATATCTAATTCGAATTCTATCAAAAGTT
GTAGCCTTTTTTTCTCCGCTGCAAATTATATTGAGACAGATTTAAGTTAT
GACCGAACGACTCACATATGCAGAGTCGCAATACTCGGCATAATAGTGAT
TCCTATTTCCGTTTGAATGGACTGAATTTTGAGATATCAGAGGCAATATC
TTACCTTTTTTTAGCCATTTCAGTTAAGGCTTGATTCTAAATCTTTCAGA
ATCCTCTCTGGATCCCTGACAAGTAAAAAATATAGTTAAAAGCTCTATTT
CCTTCCAACTGGAGAAATTGGCCAAAATATCGTCCCCGGTGGAAAATGAT
TCTCCAATTTTCGTCCTCACTGAAAATAATCAAATAAGCCAATCCTCAAT
GCAAAATATTATGTTATTTTTACCATCCTCACTAAATTTTCTGACTTGAA
AACAAAAGAATTTAAATCCCCGGTCATAAAAAATAAGGGAATATCGATCC
CCATCGAGTTTTAGTCCGTTACTTTTACCCCCACTGGCCCTTACCCCCCA
AATTCTACCAGGTCTTTGAGAAGGGGGTGTATTAATAAATCGAGACGTAG
TAAGAATTATTTACAAACCAATGTCTTTTTTAAGGTGTTTTCGATTCATT
TTTATTTGATAGAATGTTTTATGGGGAAGAGCATTTTACATACCGCCAGC
ATCAGTGAAAGAAACAATGGATACCTTGAACTTTCGTGAAAAAGGCGGCT
ATTCATTGACAAAAGTTCTATTTCAACCTGACAACGCTAATTTAAAAGAA
ATGGATGTTTTCCTGTACATGGGCAGCAAGGGTAACCCAAATTATGCCGG
TGAAGAGACGTTAGACAATGTAGCAGCTCGTATAGCGAAAGCTGTAGGCC
CTAGTGGTCCCAATGTTGATTATTTGTACAATTTGGCGTCTGTTCTTGAG
CAATACCGTGATATGATTGGTGAAGACGATAGGGAACATACTTTAGCCTT
GAAGAAAAAGGTTGATGTCATTTTATTGAATAACAAAGTTTAATAGTTTT
TAGTGTTGTCTTTTTACTCAACAGATATCACCTCAATTGAAGGTTAATTA
GCTTTTGCAAAGTAAGCAATAAATCGCGTTCAAAATAAA

Coding sequence (CDS) from alignment at sc0000087_pilon:677413..683301-

>MSTRG.11846.1.p1 ID=MSTRG.11846.1.p1|Name=MSTRG.11846.1.p1|organism=Clytia hemisphaerica_ch_hm2_pilon|type=CDS|length=1944bp|location=Sequence derived from alignment at sc0000087_pilon:677413..683301- (Clytia hemisphaerica_ch_hm2_pilon)
AATGTTTTATGGGGAAGAGCATTTTACATACCGCCAGCATCAGTGAAAGA
AACAATGGATACCTTGAACTTTCGTGAAAAAGGCGGCTATTCATTGACAA
AAGTTCTATTTCAACCTGACAACGCTAATTTAAAAGAAATGGATGTTTTC
CTGTACATGGGCAGCAAGGGTAACCCAAATTATGCCGGTGAAGAGACGTT
AGACAATGTAGCAGCTCGTATAGCGAAAGCTGTAGGCCCTAGTGGTCCCA
ATGTTGATTATTTGTACAATTTGGCGTCTGTTCTTGAGCAATACCGTGAT
ATGATTGGTGAAGACGATAGGGAACATACTTTAGCCTTGAAGAAAAAGGT
TGATGTCATTTTATTGAATAACAAAGTTTAACCTGGAAGGGTTGTAACAC
TGGTTCCAAGAGAAGATATGACTGATGTGGAGAAAACTGCCGATTTGAAT
TTCAAGCGAATAATAAATCAAAATGAAGATTTCCAGCAGTTGAACATAGA
AGTGAACAAAGGATTATGGATCTTTGGTTATGGCTCGTTGTTGTGGAAAG
TTAACTTTGAATACGAAAAAGACTTGTTTGGTACCATCAAAGGATTTGCG
CGAAGGTTTTGGCAAGAAAGTACTGATCATCGAGGAACTACTCAATTTAA
TGTTTTATGGGGAAGAGCATTTTACATACCGCCAGCATCAGTGAAAGAAA
CAATGGATACCTTGAACTTTCGTGAAAAAGGCGGCTATTCATTGACAAAA
GTTCTATTTCAACCTGACAACGCTAATTTAAAAGAAATGGATGTTTTCCT
GTACATGGGCAGCAAGGGTAACCCAAATTATGCCGGTGAAGAGACGTTAG
ACAATGTAGCAGCTCGTATAGCGAAAGCTGTAGGCCCTAGTGGTCCCAAT
GTTGATTATTTGTACAATTTGGCGTCTGTTCTTGAGCAATACCGTGATAT
GATTGGTGAAGACGATAGGGAACATACTTTAGCCTTGAAGAAAAAGGTTG
ATGTCATTTTATTGAATAACAAAGTTTAACCTGGAAGGGTTGTAACACTG
GTTCCAAGAGAAGATATGACTGATGTGGAGAAAACTGCCGATTTGAATTT
CAAGCGAATAATAAATCAAAATGAAGATTTCCAGCAGTTGAACATAGAAG
TGAACAAAGGATTATGGATCTTTGGTTATGGCTCGTTGTTGTGGAAAGTT
AACTTTGAATACGAAAAAGACTTGTTTGGTACCATCAAAGGATTTGCGCG
AAGGTTTTGGCAAGAAAGTACTGATCATCGAGGAACTACTCAATTTAATG
TTTTATGGGGAAGAGCATTTTACATACCGCCAGCATCAGTGAAAGAAACA
ATGGATACCTTGAACTTTCGTGAAAAAGGCGGCTATTCATTGACAAAAGT
TCTATTTCAACCTGACAACGCTAATTTAAAAGAAATGGATGTTTTCCTGT
ACATGGGCAGCAAGGGTAACCCAAATTATGCCGGTGAAGAGACGTTAGAC
AATGTAGCAGCTCGTATAGCGAAAGCTGTAGGCCCTAGTGGTCCCAATGT
TGATTATTTGTACAATTTGGCGTCTGTTCTTGAGCAATACCGTGATATGA
TTGGTGAAGACGATAGGGAACATACTTTAGCCTTGAAGAAAAAGGTTGAT
GTCATTTTATTGAATAACAAAGTTTAACCTGGAAGGGTTGTAACACTGGT
TCCAAGAGAAGATATGACTGATGTGGAGAAAACTGCCGATTTGAATTTCA
AGCGAATAATAAATCAAAATGAAGATTTCCAGCAGTTGAACATAGAAGTG
AACAAAGGATTATGGATCTTTGGTTATGGCTCGTTGTTGTGGAAAGTTAA
CTTTGAATACGAAAAAGACTTGTTTGGTACCATCAAAGGATTTGCGCGAA
GGTTTTGGCAAGAAAGTACTGATCATCGAGGAACTACTCAATTT
Gene-mRNA-Prot
This mRNA is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
MSTRG.11846MSTRG.11846Clytia hemisphaerica_ch_hm2_pilongene
The following polypeptide feature(s) derives from this mRNA:
Feature NameUnique NameSpeciesType
MSTRG.11846.1.p1MSTRG.11846.1.p1-proteinClytia hemisphaerica_ch_hm2_pilonpolypeptide
The following exon feature(s) are a part of this mRNA:
Feature NameUnique NameSpeciesType
MSTRG.11846.1.p1.exon3MSTRG.11846.1.p1.exon3Clytia hemisphaerica_ch_hm2_pilonexon
MSTRG.11846.1.p1.exon2MSTRG.11846.1.p1.exon2Clytia hemisphaerica_ch_hm2_pilonexon
MSTRG.11846.1.p1.exon1MSTRG.11846.1.p1.exon1Clytia hemisphaerica_ch_hm2_pilonexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0000087_pilongenomesc0000087_pilon:677413..683301 -