MSTRG.11750.1.p1 (mRNA) -

Overview
NameMSTRG.11750.1.p1
Unique NameMSTRG.11750.1.p1
TypemRNA
OrganismClytia hemisphaerica_ch_hm2_pilon (Jellyfish)

Sequence
The following sequences are available for this feature:

mRNA from alignment at sc0000086_pilon:551884..556540-

Legend: exonfive_prime_UTRpolypeptideCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>MSTRG.11750.1.p1 ID=MSTRG.11750.1.p1|Name=MSTRG.11750.1.p1|organism=Clytia hemisphaerica_ch_hm2_pilon|type=mRNA|length=4657bp|location=Sequence derived from alignment at sc0000086_pilon:551884..556540- (Clytia hemisphaerica_ch_hm2_pilon)
TCATTTATCAAACAACATTATGATATATGATACAACAGAGCAAGACGGAC
AAACATGACGATTCTTTTCCATGCTAGGGTTGTAATTTGAATTTAGAGGG
ACCACCCCTTACCATCAACTGCTCCAGCCAACTTGGGACGGTTGGACGAA
ACATGGGACGGTATGATATCTGGCCTGTATTTTCACTAACTGTTGAATCT
CTTTGACAACAAATTTGTTTTGATAACTTCACCAAGTTTATCAACCACAC
TTTCTGTCATAACATGTCACGATAAACTTTCACTGATAGCGCGCCCTTTT
TAACTGTTTGCTTTCATTCAAAATGACCGGACACCCGATTGGAGAATTAG
AGAACGCCCGTGGCCTAACTGCCTATCGCCCGATCAGGCCCGTTGGGATT
AGTAACAAATAACGAGTGTGTAACTTGCTGCGCGAGTGACGTCAAACGCT
CCATCGTTTTGCCATTTGTTCTTCTTCGTTGCAGACACTCGCATGTGTTC
CACTATGGATTTTTTTCATATTTTGATTTAAAAGCCTACTCGGTACGAAA
GAGAAATTGTGTATTTTTTAATATGCGGTTCATTAACTCAAATCAAATGA
CTTTGGAGGTTCGGTGAAATGGTGGTGGAATGGCCGTCCCATGTTTTGTC
AGATAGTCCCAAGTTGGAGCAGTTGATGGTATATGAAGGTCAATTATTCA
ATAAAGCTGATCTTTCTGATTTTTATGATTGCAATAGCTTAAAGCAGCGG
TCGCCAGTGCAAACTGCAGTGTAAGCACAGTTTTTGTGCTCCCGTTTTGG
TTGATTGGTTAAAAAATCTTGAGAAAGCAACTTCATTTCTTCAAGGTAAA
GAGGTTGCGAGATTTGGGTTGGTGAGGCAAAAATTGCTAAAAAGCTAGTA
AAATCGTAATCCTCAAATATCGAAGTTCCAGCCGCACTGTCAATAGGCTG
TCGTGTTCTCCAAAACAACTTTTCTGTCATAGCAACTTACCTGGTCTGCA
AAGTATTGGAGTAATTTTTTAAACAACTTTCTCAGAAAGTTTTATTTATT
TTCACAATGAAAACATTTAAAAAGACCAGATAGTTACTATGAAGGCATTA
CACGAAGATAAGATAACCTTACCTTATGAGAAGGGGTGTGTAGGTGTTAA
CGTAACTTGGTCTAATGTCGACATCCCTCATCTAATTCTGACACCCTTTT
TATCAGCTGAAATTGATAGAAAGGTCAAAGCTATTTTTCTTTGCTTAGTG
GTCAGGGAGGAATAATCCTTTTTCAATCAGTGATTCAAACTTTCATATTA
TTCCTGTCTCTAATTAAGGGTGTTGGAATTAGACAAGGGATGTCAGTATT
AGACCAACTTACGGTATTTGGCTTATTATAGCACAAAAGAGTCAGTGCCA
GATTTGACAGATTATATTATCAATTAGATACTCCTGTCCTACACAAAATA
GAATTTTTAAAATTAGAACAGGATAACAATGATTTGAGGCTAAAAGTGTC
AAAGAAATAAGAAAAACCAAGCCTCAACCAAAATGGTTAAGCAAATTGAA
TAAATTTTGGTTGAGGCCAGGTTGTTTTTATTTCTTTGATACTTTGAGCC
TCAAATCCTTGTTATCCTGTTCTAATTTTAGGGCAAATTGTGGTATTTCT
GGCTTGATACTCTATTTCTACTGTTTTGACACTTAAAATTAAATTTTCCC
ATCAATCTGCCCATCCATTTATTTAGGTTCATATAAAAAAGGAGCGTATC
AGCTCAATCATTGCCAATCCAATTTGTTCATTCCTAAAAATAAAAACTTT
TCTTTCAGGAAAAAATAAATATCATATACTAAAATAGATCGAACAAGTCT
TCAGGATACAGGTAATTAGATTCATAATTTGTCACTTATAGATATAATAT
ATTCTGCAAACAAAACTGTATAATCCAGCTTTAACGCACCTTTTCTGATG
TGAGTGCATCATTGTAATTCTCTTGAGATCTTATCATATTGAACCATTTT
TTGGTTTGAAAAATTTTCAACTGTAAGGAAATAATTGAAAATACTATAAA
TAAATCTGGATAAATATACTGCTTACTTTTTGTGTTTTCAGTTTTACAGT
TAATGGATATTTGTGATGTCAAGAAACTGCCTGCTGAAGAGAGAGAATAT
TTTTTGAACGCTGAAGGCAAAGAAGACTGGGTCAATTTGGTATTCACTAA
TTACAAAAAACCTCTGTCTGTCGGTATTGGTATACAGAACCAGTTTCTGG
ACAACGATAATCAGACTGTCAAACAATGGAAAAGTAGCATCAGGCTCAAG
AAATTCACATCGTTAAGAACATTCAAGAGACTAAATAAACATAAGGTTTA
TTTCCAGTTTGTTGGACCGTTTCCAGATTATTTTTATCACCAACATGAAT
TCAGTCATGAATTTACCAAATGCATCAAGATGTTTTTGGAGTTGTTCTTT
CCTGGAAAAAGTGTCATTTTTATGGGAGAAGTGAATCATAAAGAACTTGA
CATAGCCACTCGGATTCACGAAACTTCACAACAACTTCAACTGTTTCTTC
CAGGTATATAAACAGAGAGCATCTCTTATCATAAATTTCTAACATCTTGA
CTTTGATATTTAAACTTTTCTTAATTCTTTGGTAGGCTCTTTTTCTTAAA
CTTACAAGGAAGCTGTTAAATATTAAAAAAAAAATGTTGTTAGAATTAAA
AACAGTCTGCTATATATTTTACATTTTAAAACCACTCTAGATTATTCACT
TTTACTTGGATCAAATGCCAAAAAGAAAAAATATGTCTGTCTTTCAGTTT
TCTTTCTGTCTGTCTGTCTGTCTGTCTGTCTGTCTGTCTGTCTGTCTGTC
TGCCATTTTTTTCATTATTTTCATTATTTTCACTTTATTCTTAGACGTGA
ATACTTACCTGAAGAACAGCCTTCCCAAAGATGCATTTTGTGTTTGTTGT
TTGAGTTGGTTTGATTTTTATCCTTCGAAAGAATTGAACCACGTTTTGGG
AGAAGGTTCCATGGAACAAGGTACTGCAGCATTCACTTTCGGCCACTATG
CAATGTTTAAAGAGAGAGAACTTTTCCATGCCAATAATTGGAAAGCAGAT
TATGCAATTTCCTCACCATGCAATATAAGTGATAGAATCTCTCAAGACCA
GAAAGAAGGTGGCTTCTATGATTTCATAACTGAAAACGAAAAAGAGGAAG
CCAAAATCTTCACTTTGGAATGTGATCAAGAAGGTTGTGCTGGCAATAAA
CTTTCAAAATCACCTTCACCTTCTCGTGAACGCAAACTGAGTTCCACTTT
CAGAATGTTATTTAAAGATAAGATGTCATCACAACCTGCATCAGCAACTG
CGAGCGCAAACACAAGTCTTACAGATCTAAGGGAAGTGGAAGATGGACAA
CAGAGCTCGAATTCTTTGATGAGTCCAACTTATGATGAATCCAACGATTC
GGCATTGGCACCAAACACAACATTTGATTTGAGCTGTAAAATCCTTCGAC
GCCTACTCAGGGTAATAATCTTTCAAACCTTTTTCAAGCCTTGCAAACCT
TCATAAATCTAATTCGCAATTATAAAGGAAGGTAATACTTAGAATGAGAT
CGATTTGTATGGAAAATTAAAAGGTTGGTAAAGAATAATGGTGTCACAGT
GCAGGAGTAACTGACTCCATATCCTAGATGCTAGAGAGTTAATCACCCTT
TGGTTATATTCAAAGTTTCGATGTTCTTAAGAGTTGTTTATAACACTTTT
TTTCATTTATTTTCAGGCTATGTCACACGAAATTTGCCACGTGTTTGGAC
TATCACATTGTCAATATTTCTCTTGCACCATGAACACCAGTTCCTCAGTT
CTGCATACCGACACACAACCCTTACTTTTGTGTCCTGTTTGCTTACGAAA
GTTACAGTTATCATTGAATTTTCGTGTTAAAGAACGTTATCAGAAACTCC
TTGAGTTTTTACTGCTTCACACACAAGTTTGCCAACGACCTGGACTACCT
CGTGAAGAATTTCTGAGAATGCAAGAGACTCAGGTTCTAAGTGAGAAGAA
TGTTTGTTTATTCAAAAACGATGTTCAAAACATTCTTTCCATTTTAGATG
TACTTCAGGAAAAAGGAGAAAATCTTGGTTTTTCCACTCTTGACCATAAC
GAAACGGAAGAATAGAGTTCGAAATAAACAAGACAAATGAATGGCTTGTA
ATGAAAATTTTAATTTGTAACTAACTAAAGACTGAACCGAACTAATTACT
AAAGGCCATTTGTAAATTTGTACGTTCTATGTAGTAGAGGGGAGTCAAAT
GACTACCTTTTAACATACACAATACAAAATTAAAGTTATATTTCAAAGTA
TGTACTATGGGAAGAATCTGGAAGAATACTTTTTTCTCTGTACGGCCCCT
TATATTCTTCCTCGGCTCTAGTTTCACGGTCAGCTGAGTCTGTCTTATAT
CAAAGTTTGTTCTTCTCCACAGACACTATTTCTTAGATTTCTATTTCTAT
TTTATCAGCTTGTAAATTCTCATTTATTTTGTACATATCCAACACTGTTT
TTATATTGTATTTAAGCTTATTTTCAGGTATCACATTTGCAGAGTTATTA
TACACACATTATAGTGAAATAAGGATGTTGTTTTTCCTACTTTCTAACAA
ACTGGAG

Coding sequence (CDS) from alignment at sc0000086_pilon:551884..556540-

>MSTRG.11750.1.p1 ID=MSTRG.11750.1.p1|Name=MSTRG.11750.1.p1|organism=Clytia hemisphaerica_ch_hm2_pilon|type=CDS|length=4401bp|location=Sequence derived from alignment at sc0000086_pilon:551884..556540- (Clytia hemisphaerica_ch_hm2_pilon)
GCTATGTCACACGAAATTTGCCACGTGTTTGGACTATCACATTGTCAATA
TTTCTCTTGCACCATGAACACCAGTTCCTCAGTTCTGCATACCGACACAC
AACCCTTACTTTTGTGTCCTGTTTGCTTACGAAAGTTACAGTTATCATTG
AATTTTCGTGTTAAAGAACGTTATCAGAAACTCCTTGAGTTTTTACTGCT
TCACACACAAGTTTGCCAACGACCTGGACTACCTCGTGAAGAATTTCTGA
GAATGCAAGAGACTCAGGTTCTAAGTGAGAAGAATGTTTGTTTATTCAAA
AACGATGTTCAAAACATTCTTTCCATTTTAGATGTACTTCAGGAAAAAGG
AGAAAATCTTGGTTTTTCCACTCTTGACCATAACGAAACGGAAGAATAGA
CGTGAATACTTACCTGAAGAACAGCCTTCCCAAAGATGCATTTTGTGTTT
GTTGTTTGAGTTGGTTTGATTTTTATCCTTCGAAAGAATTGAACCACGTT
TTGGGAGAAGGTTCCATGGAACAAGGTACTGCAGCATTCACTTTCGGCCA
CTATGCAATGTTTAAAGAGAGAGAACTTTTCCATGCCAATAATTGGAAAG
CAGATTATGCAATTTCCTCACCATGCAATATAAGTGATAGAATCTCTCAA
GACCAGAAAGAAGGTGGCTTCTATGATTTCATAACTGAAAACGAAAAAGA
GGAAGCCAAAATCTTCACTTTGGAATGTGATCAAGAAGGTTGTGCTGGCA
ATAAACTTTCAAAATCACCTTCACCTTCTCGTGAACGCAAACTGAGTTCC
ACTTTCAGAATGTTATTTAAAGATAAGATGTCATCACAACCTGCATCAGC
AACTGCGAGCGCAAACACAAGTCTTACAGATCTAAGGGAAGTGGAAGATG
GACAACAGAGCTCGAATTCTTTGATGAGTCCAACTTATGATGAATCCAAC
GATTCGGCATTGGCACCAAACACAACATTTGATTTGAGCTGTAAAATCCT
TCGACGCCTACTCAGGATGGATATTTGTGATGTCAAGAAACTGCCTGCTG
AAGAGAGAGAATATTTTTTGAACGCTGAAGGCAAAGAAGACTGGGTCAAT
TTGGTATTCACTAATTACAAAAAACCTCTGTCTGTCGGTATTGGTATACA
GAACCAGTTTCTGGACAACGATAATCAGACTGTCAAACAATGGAAAAGTA
GCATCAGGCTCAAGAAATTCACATCGTTAAGAACATTCAAGAGACTAAAT
AAACATAAGGTTTATTTCCAGTTTGTTGGACCGTTTCCAGATTATTTTTA
TCACCAACATGAATTCAGTCATGAATTTACCAAATGCATCAAGATGTTTT
TGGAGTTGTTCTTTCCTGGAAAAAGTGTCATTTTTATGGGAGAAGTGAAT
CATAAAGAACTTGACATAGCCACTCGGATTCACGAAACTTCACAACAACT
TCAACTGTTTCTTCCAGGCTATGTCACACGAAATTTGCCACGTGTTTGGA
CTATCACATTGTCAATATTTCTCTTGCACCATGAACACCAGTTCCTCAGT
TCTGCATACCGACACACAACCCTTACTTTTGTGTCCTGTTTGCTTACGAA
AGTTACAGTTATCATTGAATTTTCGTGTTAAAGAACGTTATCAGAAACTC
CTTGAGTTTTTACTGCTTCACACACAAGTTTGCCAACGACCTGGACTACC
TCGTGAAGAATTTCTGAGAATGCAAGAGACTCAGGTTCTAAGTGAGAAGA
ATGTTTGTTTATTCAAAAACGATGTTCAAAACATTCTTTCCATTTTAGAT
GTACTTCAGGAAAAAGGAGAAAATCTTGGTTTTTCCACTCTTGACCATAA
CGAAACGGAAGAATAGACGTGAATACTTACCTGAAGAACAGCCTTCCCAA
AGATGCATTTTGTGTTTGTTGTTTGAGTTGGTTTGATTTTTATCCTTCGA
AAGAATTGAACCACGTTTTGGGAGAAGGTTCCATGGAACAAGGTACTGCA
GCATTCACTTTCGGCCACTATGCAATGTTTAAAGAGAGAGAACTTTTCCA
TGCCAATAATTGGAAAGCAGATTATGCAATTTCCTCACCATGCAATATAA
GTGATAGAATCTCTCAAGACCAGAAAGAAGGTGGCTTCTATGATTTCATA
ACTGAAAACGAAAAAGAGGAAGCCAAAATCTTCACTTTGGAATGTGATCA
AGAAGGTTGTGCTGGCAATAAACTTTCAAAATCACCTTCACCTTCTCGTG
AACGCAAACTGAGTTCCACTTTCAGAATGTTATTTAAAGATAAGATGTCA
TCACAACCTGCATCAGCAACTGCGAGCGCAAACACAAGTCTTACAGATCT
AAGGGAAGTGGAAGATGGACAACAGAGCTCGAATTCTTTGATGAGTCCAA
CTTATGATGAATCCAACGATTCGGCATTGGCACCAAACACAACATTTGAT
TTGAGCTGTAAAATCCTTCGACGCCTACTCAGGATGGATATTTGTGATGT
CAAGAAACTGCCTGCTGAAGAGAGAGAATATTTTTTGAACGCTGAAGGCA
AAGAAGACTGGGTCAATTTGGTATTCACTAATTACAAAAAACCTCTGTCT
GTCGGTATTGGTATACAGAACCAGTTTCTGGACAACGATAATCAGACTGT
CAAACAATGGAAAAGTAGCATCAGGCTCAAGAAATTCACATCGTTAAGAA
CATTCAAGAGACTAAATAAACATAAGGTTTATTTCCAGTTTGTTGGACCG
TTTCCAGATTATTTTTATCACCAACATGAATTCAGTCATGAATTTACCAA
ATGCATCAAGATGTTTTTGGAGTTGTTCTTTCCTGGAAAAAGTGTCATTT
TTATGGGAGAAGTGAATCATAAAGAACTTGACATAGCCACTCGGATTCAC
GAAACTTCACAACAACTTCAACTGTTTCTTCCAGGCTATGTCACACGAAA
TTTGCCACGTGTTTGGACTATCACATTGTCAATATTTCTCTTGCACCATG
AACACCAGTTCCTCAGTTCTGCATACCGACACACAACCCTTACTTTTGTG
TCCTGTTTGCTTACGAAAGTTACAGTTATCATTGAATTTTCGTGTTAAAG
AACGTTATCAGAAACTCCTTGAGTTTTTACTGCTTCACACACAAGTTTGC
CAACGACCTGGACTACCTCGTGAAGAATTTCTGAGAATGCAAGAGACTCA
GGTTCTAAGTGAGAAGAATGTTTGTTTATTCAAAAACGATGTTCAAAACA
TTCTTTCCATTTTAGATGTACTTCAGGAAAAAGGAGAAAATCTTGGTTTT
TCCACTCTTGACCATAACGAAACGGAAGAATAGACGTGAATACTTACCTG
AAGAACAGCCTTCCCAAAGATGCATTTTGTGTTTGTTGTTTGAGTTGGTT
TGATTTTTATCCTTCGAAAGAATTGAACCACGTTTTGGGAGAAGGTTCCA
TGGAACAAGGTACTGCAGCATTCACTTTCGGCCACTATGCAATGTTTAAA
GAGAGAGAACTTTTCCATGCCAATAATTGGAAAGCAGATTATGCAATTTC
CTCACCATGCAATATAAGTGATAGAATCTCTCAAGACCAGAAAGAAGGTG
GCTTCTATGATTTCATAACTGAAAACGAAAAAGAGGAAGCCAAAATCTTC
ACTTTGGAATGTGATCAAGAAGGTTGTGCTGGCAATAAACTTTCAAAATC
ACCTTCACCTTCTCGTGAACGCAAACTGAGTTCCACTTTCAGAATGTTAT
TTAAAGATAAGATGTCATCACAACCTGCATCAGCAACTGCGAGCGCAAAC
ACAAGTCTTACAGATCTAAGGGAAGTGGAAGATGGACAACAGAGCTCGAA
TTCTTTGATGAGTCCAACTTATGATGAATCCAACGATTCGGCATTGGCAC
CAAACACAACATTTGATTTGAGCTGTAAAATCCTTCGACGCCTACTCAGG
ATGGATATTTGTGATGTCAAGAAACTGCCTGCTGAAGAGAGAGAATATTT
TTTGAACGCTGAAGGCAAAGAAGACTGGGTCAATTTGGTATTCACTAATT
ACAAAAAACCTCTGTCTGTCGGTATTGGTATACAGAACCAGTTTCTGGAC
AACGATAATCAGACTGTCAAACAATGGAAAAGTAGCATCAGGCTCAAGAA
ATTCACATCGTTAAGAACATTCAAGAGACTAAATAAACATAAGGTTTATT
TCCAGTTTGTTGGACCGTTTCCAGATTATTTTTATCACCAACATGAATTC
AGTCATGAATTTACCAAATGCATCAAGATGTTTTTGGAGTTGTTCTTTCC
TGGAAAAAGTGTCATTTTTATGGGAGAAGTGAATCATAAAGAACTTGACA
TAGCCACTCGGATTCACGAAACTTCACAACAACTTCAACTGTTTCTTCCA
G
Gene-mRNA-Prot
This mRNA is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
MSTRG.11750MSTRG.11750Clytia hemisphaerica_ch_hm2_pilongene
The following polypeptide feature(s) derives from this mRNA:
Feature NameUnique NameSpeciesType
MSTRG.11750.1.p1MSTRG.11750.1.p1-proteinClytia hemisphaerica_ch_hm2_pilonpolypeptide
The following exon feature(s) are a part of this mRNA:
Feature NameUnique NameSpeciesType
MSTRG.11750.1.p1.exon4MSTRG.11750.1.p1.exon4Clytia hemisphaerica_ch_hm2_pilonexon
MSTRG.11750.1.p1.exon3MSTRG.11750.1.p1.exon3Clytia hemisphaerica_ch_hm2_pilonexon
MSTRG.11750.1.p1.exon2MSTRG.11750.1.p1.exon2Clytia hemisphaerica_ch_hm2_pilonexon
MSTRG.11750.1.p1.exon1MSTRG.11750.1.p1.exon1Clytia hemisphaerica_ch_hm2_pilonexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0000086_pilongenomesc0000086_pilon:551884..556540 -