MSTRG.11699.4.p1 (mRNA) -

Overview
NameMSTRG.11699.4.p1
Unique NameMSTRG.11699.4.p1
TypemRNA
OrganismClytia hemisphaerica_ch_hm2_pilon (Jellyfish)

Sequence
The following sequences are available for this feature:

mRNA from alignment at sc0000085_pilon:1143690..1147159-

Legend: exonfive_prime_UTRpolypeptideCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>MSTRG.11699.4.p1 ID=MSTRG.11699.4.p1|Name=MSTRG.11699.4.p1|organism=Clytia hemisphaerica_ch_hm2_pilon|type=mRNA|length=3470bp|location=Sequence derived from alignment at sc0000085_pilon:1143690..1147159- (Clytia hemisphaerica_ch_hm2_pilon)
ACTTTGAAGAGTCCTCTTAATGGATTATTTTACTGGGTAAGCATTGCGTT
GTTTTGAAATTGAAATTTGCTGAAAACTATTGGTGCTCATTTTTTAGTTT
AGTGAATAAAGATAAATGATGAATATGAAATAAACATGATATGGGACCAT
GGGCACTATTTGGAAGTGTTAGAAAGCTGGGAAGACGAACATTTAATTTC
AGGTATAATGGTTCTTGATTTCATAAATCATTCTTTGATTGTACTACAGA
ATGTGCGACTAATTATGTTGTTTCCTTTCTACCATGCCTATAAAATTAAT
TCATTAGTTTAAGCTGGATGAAATCAATAATTAACTGTTCACTAAGTATA
GCTAGTTAGTTTGCTCAAATTAATGTCTTGTCTAAAGATCTGTGTTTTAT
TTAGACCCCAAATAAATTTATAAAAGCAATGCCAATAAGCTCTTGGCATG
ATTCTTTATCTTTCACAATCGCTTTAACATCAAACCTTAAGGGTTTGCTT
GTATTTTTTATGAGTTTTATGTTACGAATTCAGCTTTACATTAAATAAAT
TATGTAAACGAAAAATGACGAAGAAAGGAATTGTATACAAATCACAAACT
GGTATGATAATGAGTTGCTAAATAGGCCCTAAAAGTTTGTTGTGAATGAA
ACTGCTACCTGAATAATAATGAACAAACGATTGTTTTCTGTTTAAATTTC
TGATATGATTTTTATTTACAAATCCTTTTTTGCATGAAATTGACATTGTA
CTTTTTCTTCATTTAGGTCGATTAGTTTATGCGTAAACTCAAATAAAAAA
ATGGCGGCTTCTGAAACTCCAGAAAACATTTTCGAATTCGCCGAAGCTTA
TACAATAGCCAAGAGTTCAAGTGAATGCAGTAAAACTTGGGAGGGAATCA
TCCGTATGTTTGATGTCAATATCAGTCGAGGGAAAATGATTGTCCCTGAA
ACTTTTCAACCGAAAGTTCAACGATGGTTTTCACATTCGGACGATGACAG
TCCAAAAGATGCCATCACAAGAGCTGAAAATCAAGTCATTGGTATGTGAA
GTTTTTACGTTACGTATTTCTCCGTAAGTAGGTATTAAAATTATTTATAA
ATGAGTCCTGGGAAGGACAAAACACGTGTCTGTGGATAGATGTAGTATGA
ATTTACTCTATTGCATTCTATGCTTTTTTGGTCCTTTCTCTGATATCAGC
CACTACAATAATCCCTTGTGTGATTTTTTAATTAAGTATCAAAATTCCTA
AACTTGCTCTCGGTCTTTGACTTTCTCTCTTTCATTTCTTCTTTTTGGCG
AGCCTTGTTTTGATATCAGCACAATCTCTTTCTATTGAATGTCTGAATTG
CTGACTCTCCATCGTAACGAACGGCAACCAAATTGGCCATCTAAACTAAA
CATTTTCTTGCTTTTTGATGTTTCATAGTTCGTATAGTTAACAAATGGAC
ATTCGAGCAAACACTGTTCAATCCCATACGTTCAAGGAGACCATTGAATA
TAAACAACAAGGAAAACAGAAGTAAAGAGGATGAAAAAGATGCTTTGTCA
GCAGTTTCGTCTTCCTGCGATTTCTGCATGAGAGAAGAATACACTGCTAT
TGGTATGTGTTCTCGTGGAGTTTGATCACCTGGTGAATGCCCAGGAGGTT
TTGAGTTAGTATCACCGATTTTCTAACTTAACCAGGCCACCTTTCTTTGT
CAGAACCAACTAAGCTTAATTTCATTTTTCTTTTCATTCTGGCTAAATGA
TTGAGTAGAATATTTTGAGCTCCATCTCTTATCAGAAAATTGTTTGTATT
GATCAAAAGGGTTCTCCTTGATACACTCGGTGTCGGTGTGTTAGTATTGA
CATTTATCTTTACTTTAACTCTAAAGATTCCTGGGGACGAATCGAACGCA
AAACTGCAATAACTGCATCCAATTGCGCCAAGTATGACGCCTTTCACAGT
ATGATTATCTTTAAAGACCATCATCCTCTCAAGTATTCGAAGGTAATTCA
AAACATTTTTCTATGTTTTCCCTCAAGGGCCATTGCTTAACGAGAGAAAC
TTAAGGCCGATCTCCACTTTCGCGCGAAATGGGTGACAGTTTTTTTCTTA
ACCTTTTTTGCCTGAAGAAAAGATTACATCATAAAAAAGTTTCGCGCGAA
CAAAAAAAAAGTTGAAGGAAGTTCTACTTTTTTCATCCGTTACGTCAATT
TCGACCAATGGAATTGCTTCATTTTTCAACCGACCAATGACCTTACAAAA
ACGTCAAAAAGTTTTCGCTCATGTCGCGTGAAAGTGGAGACCGGCCTTTA
GTATTGCATAGTCTTCAATTTCGAGAACTACTGAAAAATGTCAATTTTAA
AAGCAATGAAATAAAAAAGCATGAGAACTTATTAAGATCTTTTGCCTGAA
AACAACTATAACAAATAACAAAAGGCTCTGTTAAAATTTGCTGTTCGTCG
ATAGATGAAAGGTTTTCTTTTAATACTATTGTAATTTTAGGAATTATTGA
CAGACATTTTCAGCATTTGTGAAGAGTGGTTTCTACGAGCTCATGAAACA
AACGAGAAGGCAATTTACCCGATGTTTTCATGGAATTGCCAAGGACGAGC
TGGAGCTTCACAAATTCACGGTCATGCACATGTTTTGTTAGGCGAAAACT
TCCCTTATGGCAGGTACCAGTATCTGCAACATGTCGCAAAGAATTATAAC
TTAGCAAACCCTAATAGAAATTATTTTATGGATTTGATCTCGACTTCAAG
AACATTGGGCCTTGCCAAGTCTGTTGGGGAATCAACGATTTTGATCAATC
TGACACCCGGTTTTCCATACGACCTGATTGTCTTATCATGGAATTTTAAC
CAAGACTTTCAAGATGCTATGAATGAAGCAATCAAATTACTGACTCAGCA
ATTCGGATCTGTCAGTTTTAATGTAACTATCAGTTTCCCACCATTAGAAG
ATGGGAAAGTTAGAAAAACTATCGATGCTAATTGTTTGAAAGAAGCTTTA
TGTAAAGAATTTGCACCGATGCCATACATTGGATGTCTGATTGATCGCGG
AGACCCGAGCAGCATGGCATCAGATATGTGTGGCCAGAGGATTTTATTGG
GAAACAATCTTGTACCTACTGACCCTTTCTACGCTGGGAAGGTTTTAACT
GAAGTAATCCAAAATGGACAATGATGTAATTTTTAGACCGTTTTTAGACA
GAATTTAGAAATTTTAAGATTTTTACGATTCCATTGTTGGTGTTGATATG
ATTTAAGCCAGTGACTTTTTTTATAGCTTCACCAAAGCTTTAGTTGATTT
GTTGTTTTATACACACACACTAGTAAAACCTTATGGTATTCTATTTATGA
ATTATTTAATTAGTATATTTTTTACAATATCAAGTAAGTTGAAAATGATT
GTCAACAACTACAAAGTGCTCTACCAGAAGGAGCCTTAATATTCTTTACA
ATAGTAAGTTAGGACCTTAA

Coding sequence (CDS) from alignment at sc0000085_pilon:1143690..1147159-

>MSTRG.11699.4.p1 ID=MSTRG.11699.4.p1|Name=MSTRG.11699.4.p1|organism=Clytia hemisphaerica_ch_hm2_pilon|type=CDS|length=6510bp|location=Sequence derived from alignment at sc0000085_pilon:1143690..1147159- (Clytia hemisphaerica_ch_hm2_pilon)
GAATTATTGACAGACATTTTCAGCATTTGTGAAGAGTGGTTTCTACGAGC
TCATGAAACAAACGAGAAGGCAATTTACCCGATGTTTTCATGGAATTGCC
AAGGACGAGCTGGAGCTTCACAAATTCACGGTCATGCACATGTTTTGTTA
GGCGAAAACTTCCCTTATGGCAGGTACCAGTATCTGCAACATGTCGCAAA
GAATTATAACTTAGCAAACCCTAATAGAAATTATTTTATGGATTTGATCT
CGACTTCAAGAACATTGGGCCTTGCCAAGTCTGTTGGGGAATCAACGATT
TTGATCAATCTGACACCCGGTTTTCCATACGACCTGATTGTCTTATCATG
GAATTTTAACCAAGACTTTCAAGATGCTATGAATGAAGCAATCAAATTAC
TGACTCAGCAATTCGGATCTGTCAGTTTTAATGTAACTATCAGTTTCCCA
CCATTAGAAGATGGGAAAGTTAGAAAAACTATCGATGCTAATTGTTTGAA
AGAAGCTTTATGTAAAGAATTTGCACCGATGCCATACATTGGATGTCTGA
TTGATCGCGGAGACCCGAGCAGCATGGCATCAGATATGTGTGGCCAGAGG
ATTTTATTGGGAAACAATCTTGTACCTACTGACCCTTTCTACGCTGGGAA
GGTTTTAACTGAAGTAATCCAAAATGGACAATGAATTCCTGGGGACGAAT
CGAACGCAAAACTGCAATAACTGCATCCAATTGCGCCAAGTATGACGCCT
TTCACAGTATGATTATCTTTAAAGACCATCATCCTCTCAAGTATTCGAAG
TTCGTATAGTTAACAAATGGACATTCGAGCAAACACTGTTCAATCCCATA
CGTTCAAGGAGACCATTGAATATAAACAACAAGGAAAACAGAAGTAAAGA
GGATGAAAAAGATGCTTTGTCAGCAGTTTCGTCTTCCTGCGATTTCTGCA
TGAGAGAAGAATACACTGCTATTGTTTATGCGTAAACTCAAATAAAAAAA
TGGCGGCTTCTGAAACTCCAGAAAACATTTTCGAATTCGCCGAAGCTTAT
ACAATAGCCAAGAGTTCAAGTGAATGCAGTAAAACTTGGGAGGGAATCAT
CCGTATGTTTGATGTCAATATCAGTCGAGGGAAAATGATTGTCCCTGAAA
CTTTTCAACCGAAAGTTCAACGATGGTTTTCACATTCGGACGATGACAGT
CCAAAAGATGCCATCACAAGAGCTGAAAATCAAGTCATTGATGGGACCAT
GGGCACTATTTGGAAGTGTTAGAAAGCTGGGAAGACGAACATTTAATTTC
AGGAATTATTGACAGACATTTTCAGCATTTGTGAAGAGTGGTTTCTACGA
GCTCATGAAACAAACGAGAAGGCAATTTACCCGATGTTTTCATGGAATTG
CCAAGGACGAGCTGGAGCTTCACAAATTCACGGTCATGCACATGTTTTGT
TAGGCGAAAACTTCCCTTATGGCAGGTACCAGTATCTGCAACATGTCGCA
AAGAATTATAACTTAGCAAACCCTAATAGAAATTATTTTATGGATTTGAT
CTCGACTTCAAGAACATTGGGCCTTGCCAAGTCTGTTGGGGAATCAACGA
TTTTGATCAATCTGACACCCGGTTTTCCATACGACCTGATTGTCTTATCA
TGGAATTTTAACCAAGACTTTCAAGATGCTATGAATGAAGCAATCAAATT
ACTGACTCAGCAATTCGGATCTGTCAGTTTTAATGTAACTATCAGTTTCC
CACCATTAGAAGATGGGAAAGTTAGAAAAACTATCGATGCTAATTGTTTG
AAAGAAGCTTTATGTAAAGAATTTGCACCGATGCCATACATTGGATGTCT
GATTGATCGCGGAGACCCGAGCAGCATGGCATCAGATATGTGTGGCCAGA
GGATTTTATTGGGAAACAATCTTGTACCTACTGACCCTTTCTACGCTGGG
AAGGTTTTAACTGAAGTAATCCAAAATGGACAATGAATTCCTGGGGACGA
ATCGAACGCAAAACTGCAATAACTGCATCCAATTGCGCCAAGTATGACGC
CTTTCACAGTATGATTATCTTTAAAGACCATCATCCTCTCAAGTATTCGA
AGTTCGTATAGTTAACAAATGGACATTCGAGCAAACACTGTTCAATCCCA
TACGTTCAAGGAGACCATTGAATATAAACAACAAGGAAAACAGAAGTAAA
GAGGATGAAAAAGATGCTTTGTCAGCAGTTTCGTCTTCCTGCGATTTCTG
CATGAGAGAAGAATACACTGCTATTGTTTATGCGTAAACTCAAATAAAAA
AATGGCGGCTTCTGAAACTCCAGAAAACATTTTCGAATTCGCCGAAGCTT
ATACAATAGCCAAGAGTTCAAGTGAATGCAGTAAAACTTGGGAGGGAATC
ATCCGTATGTTTGATGTCAATATCAGTCGAGGGAAAATGATTGTCCCTGA
AACTTTTCAACCGAAAGTTCAACGATGGTTTTCACATTCGGACGATGACA
GTCCAAAAGATGCCATCACAAGAGCTGAAAATCAAGTCATTGATGGGACC
ATGGGCACTATTTGGAAGTGTTAGAAAGCTGGGAAGACGAACATTTAATT
TCAGGAATTATTGACAGACATTTTCAGCATTTGTGAAGAGTGGTTTCTAC
GAGCTCATGAAACAAACGAGAAGGCAATTTACCCGATGTTTTCATGGAAT
TGCCAAGGACGAGCTGGAGCTTCACAAATTCACGGTCATGCACATGTTTT
GTTAGGCGAAAACTTCCCTTATGGCAGGTACCAGTATCTGCAACATGTCG
CAAAGAATTATAACTTAGCAAACCCTAATAGAAATTATTTTATGGATTTG
ATCTCGACTTCAAGAACATTGGGCCTTGCCAAGTCTGTTGGGGAATCAAC
GATTTTGATCAATCTGACACCCGGTTTTCCATACGACCTGATTGTCTTAT
CATGGAATTTTAACCAAGACTTTCAAGATGCTATGAATGAAGCAATCAAA
TTACTGACTCAGCAATTCGGATCTGTCAGTTTTAATGTAACTATCAGTTT
CCCACCATTAGAAGATGGGAAAGTTAGAAAAACTATCGATGCTAATTGTT
TGAAAGAAGCTTTATGTAAAGAATTTGCACCGATGCCATACATTGGATGT
CTGATTGATCGCGGAGACCCGAGCAGCATGGCATCAGATATGTGTGGCCA
GAGGATTTTATTGGGAAACAATCTTGTACCTACTGACCCTTTCTACGCTG
GGAAGGTTTTAACTGAAGTAATCCAAAATGGACAATGAATTCCTGGGGAC
GAATCGAACGCAAAACTGCAATAACTGCATCCAATTGCGCCAAGTATGAC
GCCTTTCACAGTATGATTATCTTTAAAGACCATCATCCTCTCAAGTATTC
GAAGTTCGTATAGTTAACAAATGGACATTCGAGCAAACACTGTTCAATCC
CATACGTTCAAGGAGACCATTGAATATAAACAACAAGGAAAACAGAAGTA
AAGAGGATGAAAAAGATGCTTTGTCAGCAGTTTCGTCTTCCTGCGATTTC
TGCATGAGAGAAGAATACACTGCTATTGTTTATGCGTAAACTCAAATAAA
AAAATGGCGGCTTCTGAAACTCCAGAAAACATTTTCGAATTCGCCGAAGC
TTATACAATAGCCAAGAGTTCAAGTGAATGCAGTAAAACTTGGGAGGGAA
TCATCCGTATGTTTGATGTCAATATCAGTCGAGGGAAAATGATTGTCCCT
GAAACTTTTCAACCGAAAGTTCAACGATGGTTTTCACATTCGGACGATGA
CAGTCCAAAAGATGCCATCACAAGAGCTGAAAATCAAGTCATTGATGGGA
CCATGGGCACTATTTGGAAGTGTTAGAAAGCTGGGAAGACGAACATTTAA
TTTCAGGAATTATTGACAGACATTTTCAGCATTTGTGAAGAGTGGTTTCT
ACGAGCTCATGAAACAAACGAGAAGGCAATTTACCCGATGTTTTCATGGA
ATTGCCAAGGACGAGCTGGAGCTTCACAAATTCACGGTCATGCACATGTT
TTGTTAGGCGAAAACTTCCCTTATGGCAGGTACCAGTATCTGCAACATGT
CGCAAAGAATTATAACTTAGCAAACCCTAATAGAAATTATTTTATGGATT
TGATCTCGACTTCAAGAACATTGGGCCTTGCCAAGTCTGTTGGGGAATCA
ACGATTTTGATCAATCTGACACCCGGTTTTCCATACGACCTGATTGTCTT
ATCATGGAATTTTAACCAAGACTTTCAAGATGCTATGAATGAAGCAATCA
AATTACTGACTCAGCAATTCGGATCTGTCAGTTTTAATGTAACTATCAGT
TTCCCACCATTAGAAGATGGGAAAGTTAGAAAAACTATCGATGCTAATTG
TTTGAAAGAAGCTTTATGTAAAGAATTTGCACCGATGCCATACATTGGAT
GTCTGATTGATCGCGGAGACCCGAGCAGCATGGCATCAGATATGTGTGGC
CAGAGGATTTTATTGGGAAACAATCTTGTACCTACTGACCCTTTCTACGC
TGGGAAGGTTTTAACTGAAGTAATCCAAAATGGACAATGAATTCCTGGGG
ACGAATCGAACGCAAAACTGCAATAACTGCATCCAATTGCGCCAAGTATG
ACGCCTTTCACAGTATGATTATCTTTAAAGACCATCATCCTCTCAAGTAT
TCGAAGTTCGTATAGTTAACAAATGGACATTCGAGCAAACACTGTTCAAT
CCCATACGTTCAAGGAGACCATTGAATATAAACAACAAGGAAAACAGAAG
TAAAGAGGATGAAAAAGATGCTTTGTCAGCAGTTTCGTCTTCCTGCGATT
TCTGCATGAGAGAAGAATACACTGCTATTGTTTATGCGTAAACTCAAATA
AAAAAATGGCGGCTTCTGAAACTCCAGAAAACATTTTCGAATTCGCCGAA
GCTTATACAATAGCCAAGAGTTCAAGTGAATGCAGTAAAACTTGGGAGGG
AATCATCCGTATGTTTGATGTCAATATCAGTCGAGGGAAAATGATTGTCC
CTGAAACTTTTCAACCGAAAGTTCAACGATGGTTTTCACATTCGGACGAT
GACAGTCCAAAAGATGCCATCACAAGAGCTGAAAATCAAGTCATTGATGG
GACCATGGGCACTATTTGGAAGTGTTAGAAAGCTGGGAAGACGAACATTT
AATTTCAGGAATTATTGACAGACATTTTCAGCATTTGTGAAGAGTGGTTT
CTACGAGCTCATGAAACAAACGAGAAGGCAATTTACCCGATGTTTTCATG
GAATTGCCAAGGACGAGCTGGAGCTTCACAAATTCACGGTCATGCACATG
TTTTGTTAGGCGAAAACTTCCCTTATGGCAGGTACCAGTATCTGCAACAT
GTCGCAAAGAATTATAACTTAGCAAACCCTAATAGAAATTATTTTATGGA
TTTGATCTCGACTTCAAGAACATTGGGCCTTGCCAAGTCTGTTGGGGAAT
CAACGATTTTGATCAATCTGACACCCGGTTTTCCATACGACCTGATTGTC
TTATCATGGAATTTTAACCAAGACTTTCAAGATGCTATGAATGAAGCAAT
CAAATTACTGACTCAGCAATTCGGATCTGTCAGTTTTAATGTAACTATCA
GTTTCCCACCATTAGAAGATGGGAAAGTTAGAAAAACTATCGATGCTAAT
TGTTTGAAAGAAGCTTTATGTAAAGAATTTGCACCGATGCCATACATTGG
ATGTCTGATTGATCGCGGAGACCCGAGCAGCATGGCATCAGATATGTGTG
GCCAGAGGATTTTATTGGGAAACAATCTTGTACCTACTGACCCTTTCTAC
GCTGGGAAGGTTTTAACTGAAGTAATCCAAAATGGACAATGAATTCCTGG
GGACGAATCGAACGCAAAACTGCAATAACTGCATCCAATTGCGCCAAGTA
TGACGCCTTTCACAGTATGATTATCTTTAAAGACCATCATCCTCTCAAGT
ATTCGAAGTTCGTATAGTTAACAAATGGACATTCGAGCAAACACTGTTCA
ATCCCATACGTTCAAGGAGACCATTGAATATAAACAACAAGGAAAACAGA
AGTAAAGAGGATGAAAAAGATGCTTTGTCAGCAGTTTCGTCTTCCTGCGA
TTTCTGCATGAGAGAAGAATACACTGCTATTGTTTATGCGTAAACTCAAA
TAAAAAAATGGCGGCTTCTGAAACTCCAGAAAACATTTTCGAATTCGCCG
AAGCTTATACAATAGCCAAGAGTTCAAGTGAATGCAGTAAAACTTGGGAG
GGAATCATCCGTATGTTTGATGTCAATATCAGTCGAGGGAAAATGATTGT
CCCTGAAACTTTTCAACCGAAAGTTCAACGATGGTTTTCACATTCGGACG
ATGACAGTCCAAAAGATGCCATCACAAGAGCTGAAAATCAAGTCATTGAT
GGGACCATGGGCACTATTTGGAAGTGTTAGAAAGCTGGGAAGACGAACAT
TTAATTTCAG
Gene-mRNA-Prot
This mRNA is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
MSTRG.11699MSTRG.11699Clytia hemisphaerica_ch_hm2_pilongene
The following polypeptide feature(s) derives from this mRNA:
Feature NameUnique NameSpeciesType
MSTRG.11699.4.p1MSTRG.11699.4.p1-proteinClytia hemisphaerica_ch_hm2_pilonpolypeptide
The following exon feature(s) are a part of this mRNA:
Feature NameUnique NameSpeciesType
MSTRG.11699.4.p1.exon5MSTRG.11699.4.p1.exon5Clytia hemisphaerica_ch_hm2_pilonexon
MSTRG.11699.4.p1.exon4MSTRG.11699.4.p1.exon4Clytia hemisphaerica_ch_hm2_pilonexon
MSTRG.11699.4.p1.exon3MSTRG.11699.4.p1.exon3Clytia hemisphaerica_ch_hm2_pilonexon
MSTRG.11699.4.p1.exon2MSTRG.11699.4.p1.exon2Clytia hemisphaerica_ch_hm2_pilonexon
MSTRG.11699.4.p1.exon1MSTRG.11699.4.p1.exon1Clytia hemisphaerica_ch_hm2_pilonexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0000085_pilongenomesc0000085_pilon:1143690..1147159 -