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Sequence
The following sequences are available for this feature:
mRNA from alignment at sc0000085_pilon:1136545..1140219+ Legend: five_prime_UTRexonpolypeptideCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below. >MSTRG.11696.6.p1 ID=MSTRG.11696.6.p1|Name=MSTRG.11696.6.p1|organism=Clytia hemisphaerica_ch_hm2_pilon|type=mRNA|length=3675bp|location=Sequence derived from alignment at sc0000085_pilon:1136545..1140219+ (Clytia hemisphaerica_ch_hm2_pilon)
ACTAACACTTGAAATATATCTTACCTTCTTTTGTGAGTGTTAAGGGTAAG
TTGAGTATATACTATTCAAGATAAACTAGAAATGACTTTGAATCTTGAGA
ATCGCAGTGTTCTGaacgaaaaagatttttccattACTCGTCTACCATCT
TGGAAAAATTACTTTCGTTTTAAACATTCGATTCTAAGAAATTGGGCGGT
AAGGCGTGTAAGGGCGGCAAAATAGAACGCCTCTTTCGAATACCCCGGAA
TATATCACAATGCGCGTGAATCACTCGCCCTATCTTAGAAGGTCGGAAAG
GTAACCAGCTCCCAAAATTCACCTTTTCTTTTATACATAAAAAATTATGG
CTTATCCTGCAAATAATTACTCACAACATACAAGTCtatgaaagttaaaa
aatatgGCGCTATGGGAGAGACAAAAGCAAAAAGGCAGaagagtattttt
tttaaagaaagctcGTTTTCGACAATCTTCATTGATTGTATGATAGTTTA
TAGATTgatctcccgggggggggggcactcaaggtaaaagacctaccaga
cgttcggcccttaagggtaggtttttcatagttcagctagtgcactgtaa
ggggtaggaaattacaaaactacactgaactgcactgtaagggtaggaaa
ttgtgataaaaggccaattttttggtaaaattggcacaaaattggtcaat
tttggaggaaaaattccacattttctttgaaaattgcaAGGGcgcgaaat
tttgaaaaagtgcactgtaagggtatcatttttcatggaaattcactgca
ctgtaagggtccgattttagaagccaaattttgggccgaacgtatggtcg
ttttcagatcgagtgcccccccccccgggattgaTCTATGTggtgaaaat
tgtcaaaagatTAACTCCATGCCATGGATATCATGGTTGTCGCACAGAAA
GGGGATTTAACATTGaacatatatatttttatgCTCAATAAGAGTATGTT
TCTCTTGTTTCCCTCAGTTTCATTTTCGAacgcaaaatatcaaaaagaaa
aaaatcaaaatggcggaaaaaGCGatgatttattttgtttttagcgTTTT
CCTTTCCTTTCCAGCACCAAGCTCCCAGGTAAATATGTTAATTAAATTAG
AGCCTCTAGAGTGTGTAGCGcgtctttaaactttttttttccatAGTTCT
TAGTTATATAGATGGCACAACACATTATCAATTGAAAAACCTTCTGAAAC
ATGCAAACCACACAAGCCCAAACCAACTAAtattccaaaaccatcccatc
AAATCAATtaacttttagattttttgattttacagaTGGCTAAAAGTCTC
TTCATGCCACTATCGAGTCTACAAGATTTGGGATTCATTATCAAACCTCA
CAAAGATAATGTCTACAACGACATTCATAAAAGGATGGTAAGTTATTTAT
CAACAGCTCCTTGGTAATCATAGATCGAACTTTTCGATGCCATGATAGGA
TCTCCTTATCTAGAATGTAAAGATCTTATTCTCAAAATTGGCATAAAACG
ATCTAATATAAACAACACCGTTATTTTGCATCGGATAGTGCAGATACACT
GTATATATTGTGAATGTTAATATAATCTCTACCAAATCTAGACTTAATAA
ACAACAACTAGAGAAATATCATATGAGCTGTATTCCTTATTGAAATTACA
GGACATCAATTCGAACTCCAACATCGAAGTACCAATCGAGATAGCTAAAC
AGTTGGGACTTCTAAAACCTCCAGGGGCCGGAGGATGTCCACCGTGTCCC
AACCCTCCTTGTACTGGAGGTCCTGCAGGATGTGATGTCAAAGCTAAGTC
TATTTCAGAAGTGCAGATCAATGGTAAAGGTGATTACAGTGCACCAGTGG
GGCCAGTTTTCAGTGTTGGTGATGCTCCACCTCCTGGTATTGTGCATCCA
GTAAGTTCTTTTGTTCATAATCAttgcaaaaaaagttaaaaagccATACA
ACGGAGTATAATCTACTCAGATTTTGAAATGTAGAAAATCAagatgtaaa
atgtaaaaataagtATAGggtcaacactttttttcatacTACACTTTAGG
AATTGTTAACACTGAATTTGAAAGGTAAAGATGGACGCATTGGAAAACCA
GGACCCAAGGGACCACCAGGAGATGCTGGCCCACCAGGCTCACAAGGTCC
AATGGGTCCCAAAGGAGAACAAGGTGATGAATGTATTGCATCCAAGATGC
CAAAAGATGTGAGTTATATTTAGTGCATTCAATAAATTCCAATATTAAAT
TAGGCTTGCAATTAAGGCGATGCTATTCTGTAATGAATGTCATACTTGAC
ATTGAAATCAATAAGAAGCTCAAAGGAAAGCACTGATATATACTAAAACA
TTTCCTTGCAGAAACAATGTTCACCAGACATCGTGAGCAACCTTCGTGCA
AGATTGGAGAAAGTGGAGAAATGTGCAACCGTAAGTATTCATCAAGATAT
GTCTTCTCCTCAAATATGGTCAGTCAAGAACCTTTTATAAAATATCCCCA
TTTAATCATCAAAATTCATTGAATTAAATATAACTTTACTGCAATCGACA
AGTATTTTAACTCATACCCATATGTAATAATCACGACATTGAAGACATCA
TATAAAATtcaatttaatcatttttagaATACAACCTTGTTAGCAGCCAT
AACATTGAACGTATTGAGTACACTTGCAAATCAAAGACACGAAAAACCTA
AGTCCATTCTCGTCAAACAAAAACGCCCTCCACCTCCACCACCGCCCGCT
GCACCAGCCCCTCCTCCGCCTCCTGCTCAACCTGCCGCTCCACCAGCACC
CGCTAGTCCACCTTCACCTCCATCGCCACCCTCGGGACAGCCAGCAACTG
CTGCACCACCTTGTCCTGCAGGACCAGGGAAATGTGACGGAAATCAAGGC
AGTAAGTATTAAATCAGGAAATATTTGtagaaatcaaaacataaaattat
ttcACTGTGAGTCAAAAGGTAACCTTGTCTCCATAAAGTCTAGTCTTAAA
TAATAAAGCTGTTGAAATGAATGAAGGAATAAATCCTACTACGAACCTCA
GTTATATCAACTCTCTTGAAAATGTATATCATATATTCTTTAGATGCCAA
TGTCCAATCAGATGTCAAGATCGACCTGACAGGAGGCGCTGACAAACAAC
AACCAGCTTGTAAACGATCTGGCACGTGCGCAACCGATCCGTCTAAAACA
GCCAATGCATTGCAAACACTACAACAGCTTCTAAACCAAGCTAAagcaca
acaacaacaaaatcctGTGGCCAAAGATTCTGCAACTGTCTTGGTGAATG
GTGTACCGGTTAAAATACCGCTCGGGAAATAAATTGAAAGCAATGCAACT
GTCATTCATTGGGCATCTTTCATTTGTGCTATCTGTCTATCTAAGTAGTA
AATACATTACAATAAATTTGTTAAATAAAAATAGCGTCTAATCgatataa
aatttttattataattttgatatttctcaATTCTTATGactaatcagatg
gtttgagatgtttttgttttttgaaccTTTCTGTGAGCCCTGAGTAAAAC
CAAGAAATCCAAGTAGCAAGAATTCCAGTGTAAAAAGCGTGCAAGTACCC
CAACTTAAAAAATTGTGATTGAAAA Coding sequence (CDS) from alignment at sc0000085_pilon:1136545..1140219+ >MSTRG.11696.6.p1 ID=MSTRG.11696.6.p1|Name=MSTRG.11696.6.p1|organism=Clytia hemisphaerica_ch_hm2_pilon|type=CDS|length=6552bp|location=Sequence derived from alignment at sc0000085_pilon:1136545..1140219+ (Clytia hemisphaerica_ch_hm2_pilon)
aTGGCTAAAAGTCTCTTCATGCCACTATCGAGTCTACAAGATTTGGGATT
CATTATCAAACCTCACAAAGATAATGTCTACAACGACATTCATAAAAGGA
TGGACATCAATTCGAACTCCAACATCGAAGTACCAATCGAGATAGCTAAA
CAGTTGGGACTTCTAAAACCTCCAGGGGCCGGAGGATGTCCACCGTGTCC
CAACCCTCCTTGTACTGGAGGTCCTGCAGGATGTGATGTCAAAGCTAAGT
CTATTTCAGAAGTGCAGATCAATGGTAAAGGTGATTACAGTGCACCAGTG
GGGCCAGTTTTCAGTGTTGGTGATGCTCCACCTCCTGGTATTGTGCATCC
AGAATTGTTAACACTGAATTTGAAAGGTAAAGATGGACGCATTGGAAAAC
CAGGACCCAAGGGACCACCAGGAGATGCTGGCCCACCAGGCTCACAAGGT
CCAATGGGTCCCAAAGGAGAACAAGGTGATGAATGTATTGCATCCAAGAT
GCCAAAAGATAAACAATGTTCACCAGACATCGTGAGCAACCTTCGTGCAA
GATTGGAGAAAGTGGAGAAATGTGCAACCaATACAACCTTGTTAGCAGCC
ATAACATTGAACGTATTGAGTACACTTGCAAATCAAAGACACGAAAAACC
TAAGTCCATTCTCGTCAAACAAAAACGCCCTCCACCTCCACCACCGCCCG
CTGCACCAGCCCCTCCTCCGCCTCCTGCTCAACCTGCCGCTCCACCAGCA
CCCGCTAGTCCACCTTCACCTCCATCGCCACCCTCGGGACAGCCAGCAAC
TGCTGCACCACCTTGTCCTGCAGGACCAGGGAAATGTGACGGAAATCAAG
GCAATGCCAATGTCCAATCAGATGTCAAGATCGACCTGACAGGAGGCGCT
GACAAACAACAACCAGCTTGTAAACGATCTGGCACGTGCGCAACCGATCC
GTCTAAAACAGCCAATGCATTGCAAACACTACAACAGCTTCTAAACCAAG
CTAAagcacaacaacaacaaaatcctGTGGCCAAAGATTCTGCAACTGTC
TTGGTGAATGGTGTACCGGTTAAAATACCGCTCGGGAAATAAaTGGCTAA
AAGTCTCTTCATGCCACTATCGAGTCTACAAGATTTGGGATTCATTATCA
AACCTCACAAAGATAATGTCTACAACGACATTCATAAAAGGATGGACATC
AATTCGAACTCCAACATCGAAGTACCAATCGAGATAGCTAAACAGTTGGG
ACTTCTAAAACCTCCAGGGGCCGGAGGATGTCCACCGTGTCCCAACCCTC
CTTGTACTGGAGGTCCTGCAGGATGTGATGTCAAAGCTAAGTCTATTTCA
GAAGTGCAGATCAATGGTAAAGGTGATTACAGTGCACCAGTGGGGCCAGT
TTTCAGTGTTGGTGATGCTCCACCTCCTGGTATTGTGCATCCAGAATTGT
TAACACTGAATTTGAAAGGTAAAGATGGACGCATTGGAAAACCAGGACCC
AAGGGACCACCAGGAGATGCTGGCCCACCAGGCTCACAAGGTCCAATGGG
TCCCAAAGGAGAACAAGGTGATGAATGTATTGCATCCAAGATGCCAAAAG
ATAAACAATGTTCACCAGACATCGTGAGCAACCTTCGTGCAAGATTGGAG
AAAGTGGAGAAATGTGCAACCaATACAACCTTGTTAGCAGCCATAACATT
GAACGTATTGAGTACACTTGCAAATCAAAGACACGAAAAACCTAAGTCCA
TTCTCGTCAAACAAAAACGCCCTCCACCTCCACCACCGCCCGCTGCACCA
GCCCCTCCTCCGCCTCCTGCTCAACCTGCCGCTCCACCAGCACCCGCTAG
TCCACCTTCACCTCCATCGCCACCCTCGGGACAGCCAGCAACTGCTGCAC
CACCTTGTCCTGCAGGACCAGGGAAATGTGACGGAAATCAAGGCAATGCC
AATGTCCAATCAGATGTCAAGATCGACCTGACAGGAGGCGCTGACAAACA
ACAACCAGCTTGTAAACGATCTGGCACGTGCGCAACCGATCCGTCTAAAA
CAGCCAATGCATTGCAAACACTACAACAGCTTCTAAACCAAGCTAAagca
caacaacaacaaaatcctGTGGCCAAAGATTCTGCAACTGTCTTGGTGAA
TGGTGTACCGGTTAAAATACCGCTCGGGAAATAAaTGGCTAAAAGTCTCT
TCATGCCACTATCGAGTCTACAAGATTTGGGATTCATTATCAAACCTCAC
AAAGATAATGTCTACAACGACATTCATAAAAGGATGGACATCAATTCGAA
CTCCAACATCGAAGTACCAATCGAGATAGCTAAACAGTTGGGACTTCTAA
AACCTCCAGGGGCCGGAGGATGTCCACCGTGTCCCAACCCTCCTTGTACT
GGAGGTCCTGCAGGATGTGATGTCAAAGCTAAGTCTATTTCAGAAGTGCA
GATCAATGGTAAAGGTGATTACAGTGCACCAGTGGGGCCAGTTTTCAGTG
TTGGTGATGCTCCACCTCCTGGTATTGTGCATCCAGAATTGTTAACACTG
AATTTGAAAGGTAAAGATGGACGCATTGGAAAACCAGGACCCAAGGGACC
ACCAGGAGATGCTGGCCCACCAGGCTCACAAGGTCCAATGGGTCCCAAAG
GAGAACAAGGTGATGAATGTATTGCATCCAAGATGCCAAAAGATAAACAA
TGTTCACCAGACATCGTGAGCAACCTTCGTGCAAGATTGGAGAAAGTGGA
GAAATGTGCAACCaATACAACCTTGTTAGCAGCCATAACATTGAACGTAT
TGAGTACACTTGCAAATCAAAGACACGAAAAACCTAAGTCCATTCTCGTC
AAACAAAAACGCCCTCCACCTCCACCACCGCCCGCTGCACCAGCCCCTCC
TCCGCCTCCTGCTCAACCTGCCGCTCCACCAGCACCCGCTAGTCCACCTT
CACCTCCATCGCCACCCTCGGGACAGCCAGCAACTGCTGCACCACCTTGT
CCTGCAGGACCAGGGAAATGTGACGGAAATCAAGGCAATGCCAATGTCCA
ATCAGATGTCAAGATCGACCTGACAGGAGGCGCTGACAAACAACAACCAG
CTTGTAAACGATCTGGCACGTGCGCAACCGATCCGTCTAAAACAGCCAAT
GCATTGCAAACACTACAACAGCTTCTAAACCAAGCTAAagcacaacaaca
acaaaatcctGTGGCCAAAGATTCTGCAACTGTCTTGGTGAATGGTGTAC
CGGTTAAAATACCGCTCGGGAAATAAaTGGCTAAAAGTCTCTTCATGCCA
CTATCGAGTCTACAAGATTTGGGATTCATTATCAAACCTCACAAAGATAA
TGTCTACAACGACATTCATAAAAGGATGGACATCAATTCGAACTCCAACA
TCGAAGTACCAATCGAGATAGCTAAACAGTTGGGACTTCTAAAACCTCCA
GGGGCCGGAGGATGTCCACCGTGTCCCAACCCTCCTTGTACTGGAGGTCC
TGCAGGATGTGATGTCAAAGCTAAGTCTATTTCAGAAGTGCAGATCAATG
GTAAAGGTGATTACAGTGCACCAGTGGGGCCAGTTTTCAGTGTTGGTGAT
GCTCCACCTCCTGGTATTGTGCATCCAGAATTGTTAACACTGAATTTGAA
AGGTAAAGATGGACGCATTGGAAAACCAGGACCCAAGGGACCACCAGGAG
ATGCTGGCCCACCAGGCTCACAAGGTCCAATGGGTCCCAAAGGAGAACAA
GGTGATGAATGTATTGCATCCAAGATGCCAAAAGATAAACAATGTTCACC
AGACATCGTGAGCAACCTTCGTGCAAGATTGGAGAAAGTGGAGAAATGTG
CAACCaATACAACCTTGTTAGCAGCCATAACATTGAACGTATTGAGTACA
CTTGCAAATCAAAGACACGAAAAACCTAAGTCCATTCTCGTCAAACAAAA
ACGCCCTCCACCTCCACCACCGCCCGCTGCACCAGCCCCTCCTCCGCCTC
CTGCTCAACCTGCCGCTCCACCAGCACCCGCTAGTCCACCTTCACCTCCA
TCGCCACCCTCGGGACAGCCAGCAACTGCTGCACCACCTTGTCCTGCAGG
ACCAGGGAAATGTGACGGAAATCAAGGCAATGCCAATGTCCAATCAGATG
TCAAGATCGACCTGACAGGAGGCGCTGACAAACAACAACCAGCTTGTAAA
CGATCTGGCACGTGCGCAACCGATCCGTCTAAAACAGCCAATGCATTGCA
AACACTACAACAGCTTCTAAACCAAGCTAAagcacaacaacaacaaaatc
ctGTGGCCAAAGATTCTGCAACTGTCTTGGTGAATGGTGTACCGGTTAAA
ATACCGCTCGGGAAATAAaTGGCTAAAAGTCTCTTCATGCCACTATCGAG
TCTACAAGATTTGGGATTCATTATCAAACCTCACAAAGATAATGTCTACA
ACGACATTCATAAAAGGATGGACATCAATTCGAACTCCAACATCGAAGTA
CCAATCGAGATAGCTAAACAGTTGGGACTTCTAAAACCTCCAGGGGCCGG
AGGATGTCCACCGTGTCCCAACCCTCCTTGTACTGGAGGTCCTGCAGGAT
GTGATGTCAAAGCTAAGTCTATTTCAGAAGTGCAGATCAATGGTAAAGGT
GATTACAGTGCACCAGTGGGGCCAGTTTTCAGTGTTGGTGATGCTCCACC
TCCTGGTATTGTGCATCCAGAATTGTTAACACTGAATTTGAAAGGTAAAG
ATGGACGCATTGGAAAACCAGGACCCAAGGGACCACCAGGAGATGCTGGC
CCACCAGGCTCACAAGGTCCAATGGGTCCCAAAGGAGAACAAGGTGATGA
ATGTATTGCATCCAAGATGCCAAAAGATAAACAATGTTCACCAGACATCG
TGAGCAACCTTCGTGCAAGATTGGAGAAAGTGGAGAAATGTGCAACCaAT
ACAACCTTGTTAGCAGCCATAACATTGAACGTATTGAGTACACTTGCAAA
TCAAAGACACGAAAAACCTAAGTCCATTCTCGTCAAACAAAAACGCCCTC
CACCTCCACCACCGCCCGCTGCACCAGCCCCTCCTCCGCCTCCTGCTCAA
CCTGCCGCTCCACCAGCACCCGCTAGTCCACCTTCACCTCCATCGCCACC
CTCGGGACAGCCAGCAACTGCTGCACCACCTTGTCCTGCAGGACCAGGGA
AATGTGACGGAAATCAAGGCAATGCCAATGTCCAATCAGATGTCAAGATC
GACCTGACAGGAGGCGCTGACAAACAACAACCAGCTTGTAAACGATCTGG
CACGTGCGCAACCGATCCGTCTAAAACAGCCAATGCATTGCAAACACTAC
AACAGCTTCTAAACCAAGCTAAagcacaacaacaacaaaatcctGTGGCC
AAAGATTCTGCAACTGTCTTGGTGAATGGTGTACCGGTTAAAATACCGCT
CGGGAAATAAaTGGCTAAAAGTCTCTTCATGCCACTATCGAGTCTACAAG
ATTTGGGATTCATTATCAAACCTCACAAAGATAATGTCTACAACGACATT
CATAAAAGGATGGACATCAATTCGAACTCCAACATCGAAGTACCAATCGA
GATAGCTAAACAGTTGGGACTTCTAAAACCTCCAGGGGCCGGAGGATGTC
CACCGTGTCCCAACCCTCCTTGTACTGGAGGTCCTGCAGGATGTGATGTC
AAAGCTAAGTCTATTTCAGAAGTGCAGATCAATGGTAAAGGTGATTACAG
TGCACCAGTGGGGCCAGTTTTCAGTGTTGGTGATGCTCCACCTCCTGGTA
TTGTGCATCCAGAATTGTTAACACTGAATTTGAAAGGTAAAGATGGACGC
ATTGGAAAACCAGGACCCAAGGGACCACCAGGAGATGCTGGCCCACCAGG
CTCACAAGGTCCAATGGGTCCCAAAGGAGAACAAGGTGATGAATGTATTG
CATCCAAGATGCCAAAAGATAAACAATGTTCACCAGACATCGTGAGCAAC
CTTCGTGCAAGATTGGAGAAAGTGGAGAAATGTGCAACCaATACAACCTT
GTTAGCAGCCATAACATTGAACGTATTGAGTACACTTGCAAATCAAAGAC
ACGAAAAACCTAAGTCCATTCTCGTCAAACAAAAACGCCCTCCACCTCCA
CCACCGCCCGCTGCACCAGCCCCTCCTCCGCCTCCTGCTCAACCTGCCGC
TCCACCAGCACCCGCTAGTCCACCTTCACCTCCATCGCCACCCTCGGGAC
AGCCAGCAACTGCTGCACCACCTTGTCCTGCAGGACCAGGGAAATGTGAC
GGAAATCAAGGCAATGCCAATGTCCAATCAGATGTCAAGATCGACCTGAC
AGGAGGCGCTGACAAACAACAACCAGCTTGTAAACGATCTGGCACGTGCG
CAACCGATCCGTCTAAAACAGCCAATGCATTGCAAACACTACAACAGCTT
CTAAACCAAGCTAAagcacaacaacaacaaaatcctGTGGCCAAAGATTC
TGCAACTGTCTTGGTGAATGGTGTACCGGTTAAAATACCGCTCGGGAAAT
AA
Gene-mRNA-Prot
This mRNA is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this mRNA:
The following exon feature(s) are a part of this mRNA:
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| sc0000085_pilon | genome | sc0000085_pilon:1136545..1140219 + |
|
