MSTRG.11666.1.p1 (mRNA) -

Overview
NameMSTRG.11666.1.p1
Unique NameMSTRG.11666.1.p1
TypemRNA
OrganismClytia hemisphaerica_ch_hm2_pilon (Jellyfish)

Sequence
The following sequences are available for this feature:

mRNA from alignment at sc0000085_pilon:724114..726647-

Legend: exonfive_prime_UTRpolypeptideCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>MSTRG.11666.1.p1 ID=MSTRG.11666.1.p1|Name=MSTRG.11666.1.p1|organism=Clytia hemisphaerica_ch_hm2_pilon|type=mRNA|length=2534bp|location=Sequence derived from alignment at sc0000085_pilon:724114..726647- (Clytia hemisphaerica_ch_hm2_pilon)
GGAGAAACTATCATTTTTGAACAAATTGTCGGTTGTGGTTGGTTGCTATG
ACGAAAGCAAGAGTTATGAGAAGTACTTGTATCCTCTTACAGTTCGTGTG
TGTGTCTACACAAGATTTTCACTTCGAGTGAGAATGGCTTTAAAAGGAGA
GATGGAGATTTGTCAATTTATACTCTTTAAGAATCTGGATTTTAGAATAT
TAGAGAGAGATTTTGAGAGGCGGAGTAAAAGATATTTTTGGAATTCAAGA
AAAAGAAAGAAAAAAATCTCACAGTTTGTAATGGATCAAAAGTTTAATAA
TAAACAAACTAATCTTGAGCCAAAACTCTCGAGCTCTGAAACTGTTTACT
AAGCTAACACTGTATGGGATTTATATGGAAGGAACTATGGCTTGCTGTGT
TCATTCGATTAAGACTACATTGTGCGGATATATCCATGTGAAAGTTCGCT
ATAATCACACTGCCAGATACTCGGCTTGAAACCTGCTAAATCTCACAGCT
CTCACACTGTGTGTGTGAAACATAAGACACATGAACTTTTGCGAGAATTC
TTTTCATCTTGTATTGTCTTGGCGCTATGGACAGCGCATAACTGCCATGC
TATATATTCCTTCAAGAAAGCTTCTTGTCATTTGATCTAATTTTATTTTT
CTAGAAGGTTGTTACATAAATAGAGATTGGTTGACTTTTGGTTTTGTATA
TTTGAGTTGTTGGAGAGGTTGTGTAAAGATGATTCAAAATATCATCTCTG
ATCAGGTGAATGACAAACAAAACAAAGAACTTCAAAAGAAGAATAAGAGC
GTGAAGAAGGATGTCAAGAAAGTGAAAAATATCAAAATGGTGGATGGGAA
CGGGAAAGTTGTGTACCGACCAATTCACCGGAACGAATTCGAGAGGCGGA
CAAGTATCCGGATCAGTGGCCGTCATAAGGATTCGTACAACCGACTTTAT
ATCAGGGATCGAAAATATTTCAAACGGTTATTGAAGGAGTTTAATAATGC
CACTGAACAATTTTCTTTGCAAGATTTGATCAAACAAGACAAATATCAAA
GCATGCTTCAGCCTGGAGCAAGACATCATTTTATACCGTCCGGGCTAGCC
AATGTAAAGTTGAAATTTTGTACTCGCTGTGAAGACGAGTCGAAACATGT
TCTGATGGAGAGATATTACATCGACACGAACGATAAAGCCCATTACCGGA
CTGTTTTATGCTACGGATGTATGGGTACCGTATTACGGAATCACAAGGAA
ATGTCAGAACCGGGAACTAAATTCATGGAATACTACTGACAAAGATTCTT
TTGTTTTACATATAAATTTGGAAATATATTTCATACAGTCTATTATTTGT
AAAATGCTACCTATAACCGAGCCTATAACAAGCAAACAAAAAACGAAAAA
ACAACCAGTGAAAGATGGCAAAAATATGTGTTTAGATGTTTGTCAAGACT
GGCGAAAAATATTATTTCGGGTCTTATTTCAAAACAGTATTATCCGATAT
AGCAGAAATATCAAAACAAAAACAACAGCGTTTTGTGGCCGATGAACAAA
CTTCCGATCCTCGAGTTCCAACATGAAATGAAACACAAACTTAACAAACT
ACCTACTTATGTTTGGTAGTCGCATGAACCTCATACAAGGTCCTGACTGT
TCCCTTGCGTGGATATAAGTTTCAGAACCTATAACAAGTGTTGTCATAAA
ATATATTTTGAAAAAAATTATAACTAAAACTAATCCTAATGTTCACGAAA
ACTCGAAAACTCCTTCCTTTTTTATGAAAGTTCAGTAGATTCACACATTT
GGTCTGAATAATTATGACATAATTATTCCGCAGTGATCTCAATGTAGCCA
ATTTTTAGGGTGTTGCAAGGCCGAGAAATTAGATTCCTGATAATGGTTGT
CCGTTTAAAATATTGCGTCTATCTATTTACAACAGATTAATACACCCCGT
GGCAAGGATCAGGTAGAACCCGTCCTTTGTGAGAAAAGCGCTCAGAGTCT
CGCCCATTTAAATTCTTATCTCTACCAGGGATAACATTAGCTTTCTGAAT
TTCAGCCCAAGTTTGAATAATTATCAATCTTAAAGCAAAAGCTTTTCCAT
TCTCCATCAAATTTGTGCTCACCAAGGGTAAAGGATTCTCACTACTCCAC
TGAGACAAGGGTGTATAGAACTAATCTGATATAATGACATCTCAAATTTT
AAACATCGTGATCTTGTAACATATTATAGTTAGAAGATTTCACTTACTTA
CTAGCTTCCCAGATTATTCTTTCAAATTATAACTTTGTACCTATTATAAC
TGTTATGGCGATATTTTGTGATATATAAAGTATTCTGGCAATAAGAAGAG
CATAGTTTATGTAATTATTATGAAGTCCAATATTTGTTAGCCCGGAACCA
ATTTGCTCTGTACATCTGTACATCTTTAAAACATATCCAAACGTTTGCTC
AAGTTACGCCTGTCTCCAGATAACTCCTAATCCCTGAGGTTAAAAATGTA
CATAACATTGCTGGGTTATTATGGTTAATTTGAG

Coding sequence (CDS) from alignment at sc0000085_pilon:724114..726647-

>MSTRG.11666.1.p1 ID=MSTRG.11666.1.p1|Name=MSTRG.11666.1.p1|organism=Clytia hemisphaerica_ch_hm2_pilon|type=CDS|length=561bp|location=Sequence derived from alignment at sc0000085_pilon:724114..726647- (Clytia hemisphaerica_ch_hm2_pilon)
ATGATTCAAAATATCATCTCTGATCAGGTGAATGACAAACAAAACAAAGA
ACTTCAAAAGAAGAATAAGAGCGTGAAGAAGGATGTCAAGAAAGTGAAAA
ATATCAAAATGGTGGATGGGAACGGGAAAGTTGTGTACCGACCAATTCAC
CGGAACGAATTCGAGAGGCGGACAAGTATCCGGATCAGTGGCCGTCATAA
GGATTCGTACAACCGACTTTATATCAGGGATCGAAAATATTTCAAACGGT
TATTGAAGGAGTTTAATAATGCCACTGAACAATTTTCTTTGCAAGATTTG
ATCAAACAAGACAAATATCAAAGCATGCTTCAGCCTGGAGCAAGACATCA
TTTTATACCGTCCGGGCTAGCCAATGTAAAGTTGAAATTTTGTACTCGCT
GTGAAGACGAGTCGAAACATGTTCTGATGGAGAGATATTACATCGACACG
AACGATAAAGCCCATTACCGGACTGTTTTATGCTACGGATGTATGGGTAC
CGTATTACGGAATCACAAGGAAATGTCAGAACCGGGAACTAAATTCATGG
AATACTACTGA
Gene-mRNA-Prot
This mRNA is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
MSTRG.11666MSTRG.11666Clytia hemisphaerica_ch_hm2_pilongene
The following exon feature(s) are a part of this mRNA:
Feature NameUnique NameSpeciesType
MSTRG.11666.1.p1.exon1MSTRG.11666.1.p1.exon1Clytia hemisphaerica_ch_hm2_pilonexon
The following polypeptide feature(s) derives from this mRNA:
Feature NameUnique NameSpeciesType
MSTRG.11666.1.p1MSTRG.11666.1.p1-proteinClytia hemisphaerica_ch_hm2_pilonpolypeptide
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0000085_pilongenomesc0000085_pilon:724114..726647 -