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Sequence
The following sequences are available for this feature:
mRNA from alignment at sc0000085_pilon:605978..610883+ Legend: five_prime_UTRexonpolypeptideCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below. >MSTRG.11660.1.p1 ID=MSTRG.11660.1.p1|Name=MSTRG.11660.1.p1|organism=Clytia hemisphaerica_ch_hm2_pilon|type=mRNA|length=4906bp|location=Sequence derived from alignment at sc0000085_pilon:605978..610883+ (Clytia hemisphaerica_ch_hm2_pilon)
TAAAAAGAGTTAGTTTTTCACCTAGAagaagtaaacaaaaacattcgaac
ttacaatatttttttagatttatctTTGCTAGACAGCTGACAGCCACGTT
CGATTTGGGGTCAGTTCTTTGGTTTCACAATAAGAAAACTGTCTTTTTAT
GTTCtcaagatatcaaaatttggatagacaaaagacaaaagaaaaggcTG
AATTGACAGATTGAAGGGATGCCAGCGTTAGCCAAATACCGAGATGTAAA
TGAAAGCTCATCCTCAAGTGAAAACTCGGATGAAATTGGCTTGGATCATG
TTAGCAGTACAAAATTATGTTTGTTGTTCACTTGTTTGGTTTTTCTAGGC
ATTCTCTGCTTAGCTAACTCTTTGGTGAGTCTTTTTAGGGTATTTATTTC
ATTGGCagttaccgtaagttggtctacactgctgttcccctcaggcaaaa
tcgtcgattctgtagaggtcacgaaattgccgagtacagacgtcaaaaaa
aaaaaaattcaaaatggctgccgagcgagcactgacaaaaacaaaaaatt
aggaGTTTTCAATTGCCTACTACAGCAGAATAAGACAgagaaatgcagta
aaataaaaagtaaacaaaccttgaaccttttgtttgtcaaaataaggaaa
atattctagctgcagtaatgtttacattcagaaataaatccattttccac
cagaccTACAACAAGGTTTCAAACGGCATtactggcaatgaattctgact
taaaaaatgttggtccagttccctagaaagggtatgattacacttccaaa
tgacttttttttacaataacatttgtcttctcacaaatccaaaaataaag
gttataaaaccaacacgggggtcaacattctttacaacaaaccgtcagat
caaactttataaagatcaacCACGTAAATGTCACTTGTTTTCCTGATATC
TGAATAATATTAAAACCTTTCTGTATATatttggttcttcaaaaccattt
ccctttcccgcagcaggctttaaagttcatgttgacccccggttttattt
gcgcggtaatctagaaaggcctttagtgcggtataaacaaatgatttcat
tggtttaaaaaagtcaaaacatcaagCTATATCACGTGATCAGAATCATG
ATCGGACTAAACGGAAGCCGTGGTCATATGTCATATGATATTTTCGCGCG
TTTTAATTCGGCAAAGTTTAGTAAACTCGACCacgtatcaatgttttgat
ttttcaagcggggatttctgtagaatgataaaatatggcttggctggaat
cgacaccataacagcagtgtctaatatcgacatccctcgtctaattccga
cacccttctttagagaaaggaattgTTCCGCACGATGTTGACCGGTCGTC
CCAAGTTGACCGCGCACAAAGTTGGCGGAAACCGTACCAAGTTTGACCTG
CCGATTTTGAAGAgattgaaatcgaaaaaaatgatataaatgaaaaataa
ataaaaacaaacatgcaaaatgCTCAGTAACTCAGTATATGGGATAGAAT
GAGCCGGGTTAAGCCAAGTTGACCAAAAGCCCCTTATAAAGGATGGAGGT
GACACAGTCAACTTCGTATGACTGTATGGGCTATTCCAGGATGAACCAAG
TTGACCAAAAGCCCCTTATAATCTTATAAAGGATGGAGGTGACACAGTCA
ACTTCGTATGGGCTATTCCGGGTTGAACCAAGTTGACCACCTACCTCTTT
GTACCTCTTTTTGGCTTTTGCTTGAACAGCTCATCCAACTCGTTGAGTCC
GATGCCTCGACATTTCCTTGAGGCTGTTGGAGTCAGCTTGCCTAAGGTTA
AAATAGTGGGCAAGCAGAGGTTCGTCCGGAACAGTTGTGAGGAAGGTgtc
taagtgttttttgaatacttctttggggcagtttgacaaatctcttattg
gtctgggaagggtgttgaataatcgagggccttcttgggaaagacttccc
ctccagatatttttgtgtatgatattgacagcttttagatTGCAAATTCT
CCCCAATCTCTGATTTATATGGCAGGAAATGCCTCCTTTACTTTCGTCGT
TGCCTTCAATGACATTCCAggtataaattatttgataccgctctctccgt
ctttcaaggctatacagttttaatgatttgagtttttcccaataattGAG
ATGTCTGAGGGATGGAATTCCATGTAAGAATGATTTCTGAacttatatat
atcatacttaggtatatcactgcggtatatatcaaacttgtttgacttat
atattttgaacttttcgactAAAACCTTTATAAAGCAGTCAAATTGTTTA
AGCAGAATAGATTGATAATTAGTCAAGAAATTCCCTCAATTGAGGTAGAA
TTTTTTACAGCATTTGCggtataaacgtcacttttacatTTGGGGCTACT
TTAAGTGTGGGCTAGATTCCATAGCCTTCAGAATACACAATTTTTTCTTG
TACATGATTTGTCTTTAAAGAAAATCATAACAGGACTTGTTTACAATCTC
TTTGCAATCTCTTTGGCCATTCCAGAAATATACCCTCTCTGAACGACAAA
atgctttgattttttttattgacattatttaaaaagtgatCCTAATATTG
TATAAATTCTTATAAGTTCACaaatattatgaaatttttctttttttctt
ttcatagatTTTGGCAGTAATGTATCAAGTGCTTGATATTGGACTGTCTG
GAATGAATTCATTAGAATTTTCAAATGGAGAGCAAAATACAAGATGGGTA
TTGGAAACAGATTTGGAGGAAATTCTACTTCCAAAGAACGGAGGAATTGA
TGGCTTTGATGATCAGAATTTAGATTTAGCGGcggaaagaaatcaaaatg
taTGTATGTCAAATGCTAAGAACAGGCTTTCACATGCTGTAATTTTAAAT
CATTTCAGTTATTTGATGAAAGGTTTTGGGGGTTGTTTAAATTTGTATCA
AAAAACAAATAAGATTAACAGGGCAGCACTCAAGTTGTGGTATTTTGAAG
ATGATGTCAAGCcaagaaatctgaaaaaaattattttctagtTTGATAAT
ATCTTTCTTTAGATTTCATTGACAGCAAAATTTATCTCTGAATCGAAGGG
TAAGTTATAGatttaattttgagttttgtttgacttttgtaaatattttc
agaatgtttttagattatatttCGCATAAAGGAGCTCCGATTAGACTTTA
GCTTGCAAACATGGCTTGATTATGCAAGCAGAAATTTTCCTTCATCTTAT
CCTTTCTTTCTTCAGTATCTTTGACGTCTTCTGGCTCAGTTTTCCACACT
GGCTTCTTCAAGTTTGTAGACGAAGAATCAGGGAAAACGATCATCGATTT
TAACGACGACAAGAAAAAATGGGTTGAAGGAAACTTTGGTGATCAATATC
TTGCTACAAATGGGATCGAGACCCATGGGGtgagtttcatttttttgtgt
TCTAGTAAAAGGTCTACGAGAACCCGTTAAGGTATTTATCTCACGAtttt
ttttCGCTAAATTTACTAAATATCAAATATGTGTCATACTTTTTATCATA
GCTTTCTTCCCCAGTAAACGAAGATTTGGAATTAGTGGCAAGAGACGGTG
GAATTTTCCTCACTGGAAATCAACATGTCACTTTTGATGCTGGTCGGAAG
ATAGAGATCTCGAGTTATGAGGATTTATCGATCGCTGTCAAGAATAGTAA
CAATgttagtaaaatttctttggctctAAACCTCGTTTTCTTCTACTCCG
ATAGTATGAGAAGAGTTTAAACATCTTGTGAAGCTGTATTATTTACAACc
ttttctttcgaaagaaatgccattctaaactttctaaaatatttttcgaa
ctCGGTGAAAGTGATGAAGCACCAGGTAATTGTTTTCTAGAATCCTCTCA
GCATTAAGTGCAGAAACTTCCTAAGACCCATGTCAAACGATCAAGGCATC
TTAATTTTTATCAGAAAGATACTAGAAGCAAACTGGTGACCCGGCTAAGG
ACTAAATAATACAATTAGCTAATGAGCTTTGCTCTCAATATCTCTTACAC
GTGCACGTTTGATAAAAAGATGAAGATATTTTAAGTAGAGCGCCCACAAT
TGCTATTggtctttttttagaaattaacCATCGACGGTGGCTTGAAATTG
AATCGATTACGAGTTCCAAGTTCTAGAGATGAAGATGCTCACATTGAAGA
TGAAAGGTACCGGTTATGTGTTTGTACCAAAACTGGGCAACTATTTCGTG
CCAAAATGGTCAATGATATGATGACGTGTGCAATTGCAAGTGAAAATCCT
TGCCCTTaaaaaaaCTTGCTTGCTAAGTTCAAAAGATTCTGTTTGGTTTT
GTTATTTAAAACCTTActaaagtttgaatttttgatggAACATGTTACTA
CTGTGAAGTATGAATGAAAAACGTCATAGAATTAAAGAATTTTGTGCTTT
GTATTTCATGTCTGTCGTGGCCATACTACCGATAGATTAACTCCCTTGCG
CTTCTAGTGGCGAAATTTGATAATCACGTAAAGATTAGAAATGtagttaa
aatttcaaaacaaatcttttCGGCGCTGATGGTGCACAAATTATTTTGGT
CGATTTATAAGATTTTATTTTGCAATTTGTGCTCCTCAGGTCCTTACTCC
CTTTGTATATGattttattcttcattttgatAAGTGTAATTCATAGTGTT
TGTATAAGTATCCAtatttatctttgacttttatttttgtatatttttag
aaacttcgtatatttttatgtcagaacattttaagttaACGTTTTATACT
AAGATTTAGTTTACTTGTCAGAATATGCATAGATTTCTCAGAAAATTGGT
CATTTT Coding sequence (CDS) from alignment at sc0000085_pilon:605978..610883+ >MSTRG.11660.1.p1 ID=MSTRG.11660.1.p1|Name=MSTRG.11660.1.p1|organism=Clytia hemisphaerica_ch_hm2_pilon|type=CDS|length=5346bp|location=Sequence derived from alignment at sc0000085_pilon:605978..610883+ (Clytia hemisphaerica_ch_hm2_pilon)
ATGCCAGCGTTAGCCAAATACCGAGATGTAAATGAAAGCTCATCCTCAAG
TGAAAACTCGGATGAAATTGGCTTGGATCATGTTAGCAGTACAAAATTAT
GTTTGTTGTTCACTTGTTTGGTTTTTCTAGGCATTCTCTGCTTAGCTAAC
TCTTTGatTTTGGCAGTAATGTATCAAGTGCTTGATATTGGACTGTCTGG
AATGAATTCATTAGAATTTTCAAATGGAGAGCAAAATACAAGATGGGTAT
TGGAAACAGATTTGGAGGAAATTCTACTTCCAAAGAACGGAGGAATTGAT
GGCTTTGATGATCAGAATTTAGATTTAGCGGcggaaagaaatcaaaatAT
TTCATTGACAGCAAAATTTATCTCTGAATCGAAGGTATCTTTGACGTCTT
CTGGCTCAGTTTTCCACACTGGCTTCTTCAAGTTTGTAGACGAAGAATCA
GGGAAAACGATCATCGATTTTAACGACGACAAGAAAAAATGGGTTGAAGG
AAACTTTGGTGATCAATATCTTGCTACAAATGGGATCGAGACCCATGGGC
TTTCTTCCCCAGTAAACGAAGATTTGGAATTAGTGGCAAGAGACGGTGGA
ATTTTCCTCACTGGAAATCAACATGTCACTTTTGATGCTGGTCGGAAGAT
AGAGATCTCGAGTTATGAGGATTTATCGATCGCTGTCAAGAATAGTAACA
ATaaattaacCATCGACGGTGGCTTGAAATTGAATCGATTACGAGTTCCA
AGTTCTAGAGATGAAGATGCTCACATTGAAGATGAAAGGTACCGGTTATG
TGTTTGTACCAAAACTGGGCAACTATTTCGTGCCAAAATGGTCAATGATA
TGATGACGTGTGCAATTGCAAGTGAAAATCCTTGCCCTTaaATGCCAGCG
TTAGCCAAATACCGAGATGTAAATGAAAGCTCATCCTCAAGTGAAAACTC
GGATGAAATTGGCTTGGATCATGTTAGCAGTACAAAATTATGTTTGTTGT
TCACTTGTTTGGTTTTTCTAGGCATTCTCTGCTTAGCTAACTCTTTGatT
TTGGCAGTAATGTATCAAGTGCTTGATATTGGACTGTCTGGAATGAATTC
ATTAGAATTTTCAAATGGAGAGCAAAATACAAGATGGGTATTGGAAACAG
ATTTGGAGGAAATTCTACTTCCAAAGAACGGAGGAATTGATGGCTTTGAT
GATCAGAATTTAGATTTAGCGGcggaaagaaatcaaaatATTTCATTGAC
AGCAAAATTTATCTCTGAATCGAAGGTATCTTTGACGTCTTCTGGCTCAG
TTTTCCACACTGGCTTCTTCAAGTTTGTAGACGAAGAATCAGGGAAAACG
ATCATCGATTTTAACGACGACAAGAAAAAATGGGTTGAAGGAAACTTTGG
TGATCAATATCTTGCTACAAATGGGATCGAGACCCATGGGCTTTCTTCCC
CAGTAAACGAAGATTTGGAATTAGTGGCAAGAGACGGTGGAATTTTCCTC
ACTGGAAATCAACATGTCACTTTTGATGCTGGTCGGAAGATAGAGATCTC
GAGTTATGAGGATTTATCGATCGCTGTCAAGAATAGTAACAATaaattaa
cCATCGACGGTGGCTTGAAATTGAATCGATTACGAGTTCCAAGTTCTAGA
GATGAAGATGCTCACATTGAAGATGAAAGGTACCGGTTATGTGTTTGTAC
CAAAACTGGGCAACTATTTCGTGCCAAAATGGTCAATGATATGATGACGT
GTGCAATTGCAAGTGAAAATCCTTGCCCTTaaATGCCAGCGTTAGCCAAA
TACCGAGATGTAAATGAAAGCTCATCCTCAAGTGAAAACTCGGATGAAAT
TGGCTTGGATCATGTTAGCAGTACAAAATTATGTTTGTTGTTCACTTGTT
TGGTTTTTCTAGGCATTCTCTGCTTAGCTAACTCTTTGatTTTGGCAGTA
ATGTATCAAGTGCTTGATATTGGACTGTCTGGAATGAATTCATTAGAATT
TTCAAATGGAGAGCAAAATACAAGATGGGTATTGGAAACAGATTTGGAGG
AAATTCTACTTCCAAAGAACGGAGGAATTGATGGCTTTGATGATCAGAAT
TTAGATTTAGCGGcggaaagaaatcaaaatATTTCATTGACAGCAAAATT
TATCTCTGAATCGAAGGTATCTTTGACGTCTTCTGGCTCAGTTTTCCACA
CTGGCTTCTTCAAGTTTGTAGACGAAGAATCAGGGAAAACGATCATCGAT
TTTAACGACGACAAGAAAAAATGGGTTGAAGGAAACTTTGGTGATCAATA
TCTTGCTACAAATGGGATCGAGACCCATGGGCTTTCTTCCCCAGTAAACG
AAGATTTGGAATTAGTGGCAAGAGACGGTGGAATTTTCCTCACTGGAAAT
CAACATGTCACTTTTGATGCTGGTCGGAAGATAGAGATCTCGAGTTATGA
GGATTTATCGATCGCTGTCAAGAATAGTAACAATaaattaacCATCGACG
GTGGCTTGAAATTGAATCGATTACGAGTTCCAAGTTCTAGAGATGAAGAT
GCTCACATTGAAGATGAAAGGTACCGGTTATGTGTTTGTACCAAAACTGG
GCAACTATTTCGTGCCAAAATGGTCAATGATATGATGACGTGTGCAATTG
CAAGTGAAAATCCTTGCCCTTaaATGCCAGCGTTAGCCAAATACCGAGAT
GTAAATGAAAGCTCATCCTCAAGTGAAAACTCGGATGAAATTGGCTTGGA
TCATGTTAGCAGTACAAAATTATGTTTGTTGTTCACTTGTTTGGTTTTTC
TAGGCATTCTCTGCTTAGCTAACTCTTTGatTTTGGCAGTAATGTATCAA
GTGCTTGATATTGGACTGTCTGGAATGAATTCATTAGAATTTTCAAATGG
AGAGCAAAATACAAGATGGGTATTGGAAACAGATTTGGAGGAAATTCTAC
TTCCAAAGAACGGAGGAATTGATGGCTTTGATGATCAGAATTTAGATTTA
GCGGcggaaagaaatcaaaatATTTCATTGACAGCAAAATTTATCTCTGA
ATCGAAGGTATCTTTGACGTCTTCTGGCTCAGTTTTCCACACTGGCTTCT
TCAAGTTTGTAGACGAAGAATCAGGGAAAACGATCATCGATTTTAACGAC
GACAAGAAAAAATGGGTTGAAGGAAACTTTGGTGATCAATATCTTGCTAC
AAATGGGATCGAGACCCATGGGCTTTCTTCCCCAGTAAACGAAGATTTGG
AATTAGTGGCAAGAGACGGTGGAATTTTCCTCACTGGAAATCAACATGTC
ACTTTTGATGCTGGTCGGAAGATAGAGATCTCGAGTTATGAGGATTTATC
GATCGCTGTCAAGAATAGTAACAATaaattaacCATCGACGGTGGCTTGA
AATTGAATCGATTACGAGTTCCAAGTTCTAGAGATGAAGATGCTCACATT
GAAGATGAAAGGTACCGGTTATGTGTTTGTACCAAAACTGGGCAACTATT
TCGTGCCAAAATGGTCAATGATATGATGACGTGTGCAATTGCAAGTGAAA
ATCCTTGCCCTTaaATGCCAGCGTTAGCCAAATACCGAGATGTAAATGAA
AGCTCATCCTCAAGTGAAAACTCGGATGAAATTGGCTTGGATCATGTTAG
CAGTACAAAATTATGTTTGTTGTTCACTTGTTTGGTTTTTCTAGGCATTC
TCTGCTTAGCTAACTCTTTGatTTTGGCAGTAATGTATCAAGTGCTTGAT
ATTGGACTGTCTGGAATGAATTCATTAGAATTTTCAAATGGAGAGCAAAA
TACAAGATGGGTATTGGAAACAGATTTGGAGGAAATTCTACTTCCAAAGA
ACGGAGGAATTGATGGCTTTGATGATCAGAATTTAGATTTAGCGGcggaa
agaaatcaaaatATTTCATTGACAGCAAAATTTATCTCTGAATCGAAGGT
ATCTTTGACGTCTTCTGGCTCAGTTTTCCACACTGGCTTCTTCAAGTTTG
TAGACGAAGAATCAGGGAAAACGATCATCGATTTTAACGACGACAAGAAA
AAATGGGTTGAAGGAAACTTTGGTGATCAATATCTTGCTACAAATGGGAT
CGAGACCCATGGGCTTTCTTCCCCAGTAAACGAAGATTTGGAATTAGTGG
CAAGAGACGGTGGAATTTTCCTCACTGGAAATCAACATGTCACTTTTGAT
GCTGGTCGGAAGATAGAGATCTCGAGTTATGAGGATTTATCGATCGCTGT
CAAGAATAGTAACAATaaattaacCATCGACGGTGGCTTGAAATTGAATC
GATTACGAGTTCCAAGTTCTAGAGATGAAGATGCTCACATTGAAGATGAA
AGGTACCGGTTATGTGTTTGTACCAAAACTGGGCAACTATTTCGTGCCAA
AATGGTCAATGATATGATGACGTGTGCAATTGCAAGTGAAAATCCTTGCC
CTTaaATGCCAGCGTTAGCCAAATACCGAGATGTAAATGAAAGCTCATCC
TCAAGTGAAAACTCGGATGAAATTGGCTTGGATCATGTTAGCAGTACAAA
ATTATGTTTGTTGTTCACTTGTTTGGTTTTTCTAGGCATTCTCTGCTTAG
CTAACTCTTTGatTTTGGCAGTAATGTATCAAGTGCTTGATATTGGACTG
TCTGGAATGAATTCATTAGAATTTTCAAATGGAGAGCAAAATACAAGATG
GGTATTGGAAACAGATTTGGAGGAAATTCTACTTCCAAAGAACGGAGGAA
TTGATGGCTTTGATGATCAGAATTTAGATTTAGCGGcggaaagaaatcaa
aatATTTCATTGACAGCAAAATTTATCTCTGAATCGAAGGTATCTTTGAC
GTCTTCTGGCTCAGTTTTCCACACTGGCTTCTTCAAGTTTGTAGACGAAG
AATCAGGGAAAACGATCATCGATTTTAACGACGACAAGAAAAAATGGGTT
GAAGGAAACTTTGGTGATCAATATCTTGCTACAAATGGGATCGAGACCCA
TGGGCTTTCTTCCCCAGTAAACGAAGATTTGGAATTAGTGGCAAGAGACG
GTGGAATTTTCCTCACTGGAAATCAACATGTCACTTTTGATGCTGGTCGG
AAGATAGAGATCTCGAGTTATGAGGATTTATCGATCGCTGTCAAGAATAG
TAACAATaaattaacCATCGACGGTGGCTTGAAATTGAATCGATTACGAG
TTCCAAGTTCTAGAGATGAAGATGCTCACATTGAAGATGAAAGGTACCGG
TTATGTGTTTGTACCAAAACTGGGCAACTATTTCGTGCCAAAATGGTCAA
TGATATGATGACGTGTGCAATTGCAAGTGAAAATCCTTGCCCTTaa
Gene-mRNA-Prot
This mRNA is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this mRNA:
The following exon feature(s) are a part of this mRNA:
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| sc0000085_pilon | genome | sc0000085_pilon:605978..610883 + |
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