MSTRG.11594.1.p1 (mRNA) -

Overview
NameMSTRG.11594.1.p1
Unique NameMSTRG.11594.1.p1
TypemRNA
OrganismClytia hemisphaerica_ch_hm2_pilon (Jellyfish)

Sequence
The following sequences are available for this feature:

mRNA from alignment at sc0000084_pilon:1071708..1078349-

Legend: exonfive_prime_UTRpolypeptideCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>MSTRG.11594.1.p1 ID=MSTRG.11594.1.p1|Name=MSTRG.11594.1.p1|organism=Clytia hemisphaerica_ch_hm2_pilon|type=mRNA|length=6642bp|location=Sequence derived from alignment at sc0000084_pilon:1071708..1078349- (Clytia hemisphaerica_ch_hm2_pilon)
ATATTTCTCATAGAAAACGAATATTACTTGAAAAATTTGTTAAAAAACAA
AATGGCTTCCCTAACATTGAAAGAGAGTTCATTGACGATGACTTTATCTT
TGACAATCCTGTTCGGTATATTTGTTTCTTCTAATTTGACGGCAGCCGAA
ACATTTTCTTGTCACCGTGGAAACTATGCTAATGGAACAGACAATGCTCA
GCCAGACAAAAACTGCAGTAAGTTATTTTTTATTTATAGCATAGGTAACA
CGAACAAATAGTACAACACACAATGTGGATATCCCACAATGTTCCTAACC
TCCCGCAGTACACGTCTTTTGTAAGAACATCCAAAAGTTTCGAAGTCTTT
AGGGTGTTTTCGCGCAATATAGCAAAACAACTCGATGCATTTACACCGCT
ATTGAGTAATGCTGCCATTAGGGTGGTACCACTTTTCAAAAAACTCCAAT
CAAAAATTTTGCTTGGCCGGGATTGAGAAACTTGGTCCAGGGTATATAAA
GGTCAGTGCTAGGATCCACATGATCCAGATGCAAGCTCAAACGTCAATTA
TATGATTTATAGCAGGAATTTGTCCTGAATTGTATGAAATATACCCAAAA
CCTTTTGATGCTAATAAATTGCGATTATGTAAAACTATCCGACGATCCCT
GCCATCATTCGTTCCCACTCTTCTACTAACGATAGACCTATTTTATAAGT
TACTTCATGAACATCACTTACCTCGTATTTGAACTATTTCCATGGTGATT
AATTCCACGAGCGGATTTTATTAAAACTGTTTCCTATTCATAAAATAATC
ATTTAATGTCTCAAGAGACATAATCACCATGGTAATTGCTAGAATACGAG
ATAAGTGATTTCATGACGTAATTGCCACCGCAGGAAGCCTAAAGCTTCCG
AGGATGGCATTCATAGCTTCACTCGTGAGGGAAAGTTGGGAAAACATCTC
ATAATTTTGCGCGCGCGTTTCAGTATTTTAGTTCCGCTTAGCGGAACATT
ATCAATTAACGGTTATTTGATTTCCCGGAATGAAGAGCGATAAGCCGTGT
TTTACAGGATAGCTCTTTTTTAGCTTGCGCGGCGGACGTTTGTTTCTTCC
TATCGTGTCGGAGCTTTCAAACAATGTCAATTGAATTATCTGGTATTTCT
TCTATTGACTATGTTTCAAACGATCAGCCGATGGCTCTGGCTTTAGGTAT
AAGGTAATGTCAGCGATAAAAAAGGAAAGTTGGTGGACCTGATGTGATGG
TGGCAGACATCTTGAATTTCTCCCTGTTTCTTTAAATCTGTTTTATTCCA
GTTATTAGCACAGTCCAGTAGTCCAATCGCACTACTTTTCTATAAACCCA
ACAATCCAGTGTGAGTTTGCTGAAAGGAAAACTAAACAATTTGAATCCTT
TTTAGACATTGAGATTGATTTATATTTTCCAGCGAAACAGAACACAGACT
GACAGAACAACAGTCTGACAGTTATTTATATAGTTTTTTCCATCATCGTT
CTAACACTATTGATACAGAACAGCACACAGCTGACAATTAAAAGAATTTT
TGAAACTGAACTAAAGTATAAAACAAGGCGCCCTATAAAAGGGAAATTCC
ATAAAGGAAAGTTTGCATTTTGCAAAAATCTATATATACAGTAGTTGACA
CTCTCTAATTCAAATTTCAAGGGATTCTCATCGAATACCACAGCATATTG
AATATTGAGAAAGTCTCCCAAATCCCTAAAGTAAATATTGAATTATAGAG
TAACACGGGAAGAAGAAGGCGAAGCGAAGGTTGATTATTGCGATTGGTTT
TTGAACGTCGAATCAGTACAATAACCGAAGATCTTGCTGAAAATTTATAT
AAGTTTTTTGGAAGAAATCTTTGATATTTGCAATATTTGAGGAGTCAAAT
TTTGAGTTTCTAATTTGAACGCAACAAAATCGAACATTTGAATTTCAAAA
TATCTGGCATTTTTTTTGTTACTAGAAATCAAATAAGAGAGTGGTTTTTC
AAAACCTTTAAAGTGACTTCAAATTTTTATCCAAAACGGGCTTATCAAAT
AGTAGAACGTCAAATTAAAGTCTATTCACGATAAGTGTGCACTCTTTTTT
CTTTTACTTATAACTTTTGAAGGAATTCTTCAATCTTTATAAATTTGGCA
TCATTGGAAAGATATTAGTGAGTGGAACAATTTGAAATAAAAAAAGCTTT
AAACAGATCATAAAAATGAAGATGAAAATGAAGAAGAAAAAAATGAAGAT
CTTGTAGAAAAGTGCTATAGCTATCATTTTCACTGAAGTGAATCCTTAAT
CATCGAACGTCATTACTGTGAAAAAAATTCTCAAAAATAATCATTCAGTC
AAAAGATATCAAACAAAGTTATAAGCTGATTGACGTCTAAAAACGCTGTT
TTCTGCAGTTTTTTGCTGTTTTTTGGGGTCAATCACTCATTAACTTTGTA
TCATAACTTTATATTGAATAAATATTTTAATGAAATTTCTTCACAGTGAT
GATCTCCTAAGATCAAGGAATCTCTCTAGTGAAAATGAAAGTTATAGCAC
TTTTCTACAAGATCTTCATTTTTTTCTTCTTCATTTTCATCTTCATTTTT
ATGATCTTTTTAAGGTTTTTTTTATTTCAAATTATTCCACTCACAAATAT
CTTTCCAATGATACCAAATTTAAAAAGAATTAAGAATTCCTTCAAAAGTT
ATAAGTAAAAGAAAAAAGAGTGCACACTTATCGTGAATAGACTTTAGACA
GTGTCAACTGTAATTACATTTTTTGCTTTTTGCTCCTAAAATAATTTGAA
GATTTTTCACAGTATGGCAGAGGAAGACTTTGCGATTAATCTAGACACTG
CATTGAATGTTGCACATTTCCGAAATTCAAGCAGGACAACTGGCAGTCGT
ACCTATTCTTGCGCTGTTGATTGCTTTCTTGAAATATGTTACCGCTTGCT
TCTTCCAGAAATGAAAGCTAAAGTATCATATGAAAAATCAAGTGATTTTT
TTAAGCTGCTTCAATTAAGTGGATCAATGGAAATTTCACTTGAAGATTAC
GATATGAAAAGTAATGCTTTTCGACTGCTGGATGAAATTAGGGAACCGGT
ATGGTCTAAGATTATTGAAAATTGTGGTACCTTTGTGAGAAGAAATAGCG
ACGCAGAGTTTCAAGAGATTTTTGGAAGTAATATTTTCAAAGAATTATCA
GAAGAAGAGAGACATGTTTTTGAAACAAGTTTTGTAATTCAGGGTACTTG
TAATAGTTGTGGTAGTGAGAAGGAACAAAGAGAAACGGGTAGCATTGTCA
GTCTTCTTTCGCATTTTTTATATCCAGAGATTTTAGTTGATGCAAGTTTG
TGGCCAAACTGTGTATCAAATTCTCTTAATCCAAGCTCAGAAATTAATTG
TGATTCTTGCTCTGTCAACATACCAGCACAGATTCAAGTTGTCAATTTGC
CTATTTTTCTTCTTATAGAACTCTGTACAACAGTATGTATAAACAATTGT
AGATTTTTTGAGGAGATTATAGTAAAAGAAAATAGCTACACATTACATGC
CATTGTAAGGAATTGTGGTGCCCATTTTGCATGTGGTATATTTATTGAGA
ATAAATGGATTTACATTGATGATTTAAATCCTGAAAAAATTTGTTTTCAA
AACATTAATGAAATGTTTTCTGAAAACAAAGGAGGTTGGTTTTTTGCCTT
TTATAGAAAATCTGATTCTGAAAAAATTGACTTTGTTATAGATACTACTA
ACCCTCTTAACACAGAATTGTCTATCAATAATGAAGAAAATGAGATCAAA
AAAACATATCCTAATCGAAAGAGAAATCCAATAAACTATGAAGGTCTTTG
CAGTACAAGCAACAAAAAAAAGTAAATTTGATGATTTATTTGAGAAAATC
AACCAAAAGGTTAAAATTTTGAAACGAAAGGAAGAAAATAAAAAATTTTA
CGACTCGCATTCTGTGAAAATAAAAGCAAATTATGACCATGAAAAGCGAA
TAGCTCATTACAACCCTGAAAAGCGAAAGCTAGTGTATGATTCTAATAAG
CGAAAAGAACGATACAATCCAAAAGAGCGAAAAGAAAGATACAATCCAAA
ACAACGAAAAGAAATGTACAATTTAAACAAGCAAAAATTAAATTCACAGT
CTGAAGAAAAGAAAGTCAACTACAATATATGTAGTGAAAATATGAAAAAA
TTTCAGCAGTCAATGAAGTTTATTATGGTTCAATGTCAAACATGTTTTGA
AACTTGGCCTATGAAAAGCACGTTAAAGTCAGTTTGTAATTGCCACCGCA
GGAAGCCTAAAGCTTCCGAGGATGGCATTCATAGCTTCACGCATAAGGAA
GTTGGGCAAACATCTCATAATTTTGCGCGCGTTTTTCAGTATTTTAGTTC
CGGTTAAATGGTGTACCGGTAACATTCTTAGCTTGACTGTATTTCTATTG
TTTTATCATCATTAAAAACACTTTTCCAGATTTGTTTTGATCTGATTACC
CATTTTCAAAGCTCTCTATGTCTTTTTTTATTACCTCAGGGACTCAAATT
AAGGGAAATTCCTTTTTTGTTACGAAATTCCCTATTTAAACCACAAGTAG
TTATTAACCGCTCAGAGAAAGGCAAATTAGAAATTGTCATATCCTTTCAA
AAGTTTGTCGTTTGACAATTACAGTCAAATGGCAGTACAGTACAGTAGCG
TTTAGTATGATATCAATTTTGCTTCAGATGAGATGCCATTCTAACAGAAG
TAACGGCTATCAGTAACATTTCTTTCCAAATTCAACAACTTATTTGATCG
TTCTTCTGCGGTGGCACTTTAATGAAAATTATGGCTAGTTTATGAAAAGG
TCTATCTATTATCTCTGGCTCGAGCTTGCAACAAAATTCAAACCTTGTCC
AAATAAATCTCATTACTTTCCTAGCGGGTACTTCATTGTGTTATATGGAG
CGCAAAGAAAATGGTCTGGAGCTCCGTGGCTGCTTACCACACCCTGAAGC
ACCAATCCAAGTGAAGTGTAACCAAACAGAAAATGGTGTGTTTGCATGTT
GTTGTCGGGAATCGTTGTGCAACACGTTAGAGTTCCGTAGTGATTGCTAT
GAGAGATTCAATGCAACTGACCCGTATGATACAACGACAACAACAACAAC
GACAACTACAACGACTACAACCACGACAACTTCGACGACCACGACAACTA
CAGGTTAGAATTTTTTGCAAAGTATACCCCTCTCAAAAATCGGTTTTGTT
TTCAACCTCAGCTTATCATTGGCTTTTCCAACACTCGCCATATAACTTTT
CATGATGCCTATCAGGCACTTAAAGCTTGGGTTGCCTTTTGATTCTGATA
GCTTTGCCAAAAGTAAATCCATTATTCGATAAGTATATTCAAAAGGCATT
TCCCATATCCTTCGGCTGCGAAATTGAGTTTTTTGCTTTGAGTATGATTT
TTCAGAGGACCTTTCCAGGTCTTTTACACCGTTGTAGACTTTCGGTAATG
AAACGGGGGTGTGTTTACATATTCTAAGAGAAAAATCATTTGCAATTTAG
ATCCATCAACTACGACGAGTACTACCACAACAACAAACGCTCCGTCCACA
ACAACACCTAGCAAAAGCTCTGTCTTGATGTCATCTTGCTATTTGGTCAT
GATGCCACTTATTTTGGGTGTTTTTACTCTGTATTGAGTAATTGAGGAAA
TTGTATGATTGATTCTATCCACGACGTAAAGACTATTTAAAAACCGTTTT
GGCGAAGTGTAACAAACTAACTACTTTTCATAAGAACAAACTATATAAAA
ACATAAGGCTTTGATGGCCAAAATGTTAAAAACAAGTTAAGAACATTTTG
AAGCTTTGATGACCCTAAAACACCTATTATCTTAGGAAAATGGACAAAAA
TGCTCTCAAAATGGTAGAAATAAGAATATTTTTAGGCTTAAAACTCAAAC
ATTAAGAACATTCGAAGGCTTTATTTTTCGATGTTCTTATAAAAAACTAC
CTATAGAATATCAAGTTACACACACGTGTACTTTACTGTAGACTAACTTT
ACTGCCATAGCATCTTTGTCCTCTGAGGACAGATCTTGAAAGTAATATAG
GTTTGCAAGATTACGGGTATATCCGAGCGAAACATCAACCTTTATAAAAA
CTAAATTTGAATATCTTTTCCCAATTTTGGACGCATTTGTGACCCTTGGT
GGGACTATCAATCCAAAAATTTGGTTATTATCTACATTTCATCATCTCCT
TCATGTTTAAATTTAACATTGTGTTTTGTTATTTTGTATCTATATTTAAC
ATTAAATACAACCCTGGCATTGGTGAGAATTTCATAGCCATTAGTAATGA
AATTATTGAGCTCTAAACCAATACTTTCACCTCAAAAATCAAATCGGGAT
GAATTTTTTTCGCCAGGCCGATTTCTTCAGTAGATCCCACCGGATCTGCG
ATGAGGGATGTATTTATTACATAAAACTTATACTTTTTATACTTAACTTT
ACAAAGGGGGCATGTAGAAATCCCAAGTATTATAAAAGATTATTTTGCAA
ATTATGGCTAAAATGGTATTAATTTTATCATCAAGATTTTTGTAGCTCTT
TAATAGATATTCTTATTTCTATAGAAAATTAGGTGATGTTTG

Coding sequence (CDS) from alignment at sc0000084_pilon:1071708..1078349-

>MSTRG.11594.1.p1 ID=MSTRG.11594.1.p1|Name=MSTRG.11594.1.p1|organism=Clytia hemisphaerica_ch_hm2_pilon|type=CDS|length=1746bp|location=Sequence derived from alignment at sc0000084_pilon:1071708..1078349- (Clytia hemisphaerica_ch_hm2_pilon)
ATCCATCAACTACGACGAGTACTACCACAACAACAAACGCTCCGTCCACA
ACAACACCTAGCAAAAGCTCTGTCTTGATGTCATCTTGCTATTTGGTCAT
GATGCCACTTATTTTGGGTGTTTTTACTCTGTATTGACGGGTACTTCATT
GTGTTATATGGAGCGCAAAGAAAATGGTCTGGAGCTCCGTGGCTGCTTAC
CACACCCTGAAGCACCAATCCAAGTGAAGTGTAACCAAACAGAAAATGGT
GTGTTTGCATGTTGTTGTCGGGAATCGTTGTGCAACACGTTAGAGTTCCG
TAGTGATTGCTATGAGAGATTCAATGCAACTGACCCGTATGATACAACGA
CAACAACAACAACGACAACTACAACGACTACAACCACGACAACTTCGACG
ACCACGACAACTACAGATGGCTTCCCTAACATTGAAAGAGAGTTCATTGA
CGATGACTTTATCTTTGACAATCCTGTTCGGTATATTTGTTTCTTCTAAT
TTGACGGCAGCCGAAACATTTTCTTGTCACCGTGGAAACTATGCTAATGG
AACAGACAATGCTCAGCCAGACAAAAACTGCAATCCATCAACTACGACGA
GTACTACCACAACAACAAACGCTCCGTCCACAACAACACCTAGCAAAAGC
TCTGTCTTGATGTCATCTTGCTATTTGGTCATGATGCCACTTATTTTGGG
TGTTTTTACTCTGTATTGACGGGTACTTCATTGTGTTATATGGAGCGCAA
AGAAAATGGTCTGGAGCTCCGTGGCTGCTTACCACACCCTGAAGCACCAA
TCCAAGTGAAGTGTAACCAAACAGAAAATGGTGTGTTTGCATGTTGTTGT
CGGGAATCGTTGTGCAACACGTTAGAGTTCCGTAGTGATTGCTATGAGAG
ATTCAATGCAACTGACCCGTATGATACAACGACAACAACAACAACGACAA
CTACAACGACTACAACCACGACAACTTCGACGACCACGACAACTACAGAT
GGCTTCCCTAACATTGAAAGAGAGTTCATTGACGATGACTTTATCTTTGA
CAATCCTGTTCGGTATATTTGTTTCTTCTAATTTGACGGCAGCCGAAACA
TTTTCTTGTCACCGTGGAAACTATGCTAATGGAACAGACAATGCTCAGCC
AGACAAAAACTGCAATCCATCAACTACGACGAGTACTACCACAACAACAA
ACGCTCCGTCCACAACAACACCTAGCAAAAGCTCTGTCTTGATGTCATCT
TGCTATTTGGTCATGATGCCACTTATTTTGGGTGTTTTTACTCTGTATTG
ACGGGTACTTCATTGTGTTATATGGAGCGCAAAGAAAATGGTCTGGAGCT
CCGTGGCTGCTTACCACACCCTGAAGCACCAATCCAAGTGAAGTGTAACC
AAACAGAAAATGGTGTGTTTGCATGTTGTTGTCGGGAATCGTTGTGCAAC
ACGTTAGAGTTCCGTAGTGATTGCTATGAGAGATTCAATGCAACTGACCC
GTATGATACAACGACAACAACAACAACGACAACTACAACGACTACAACCA
CGACAACTTCGACGACCACGACAACTACAGATGGCTTCCCTAACATTGAA
AGAGAGTTCATTGACGATGACTTTATCTTTGACAATCCTGTTCGGTATAT
TTGTTTCTTCTAATTTGACGGCAGCCGAAACATTTTCTTGTCACCGTGGA
AACTATGCTAATGGAACAGACAATGCTCAGCCAGACAAAAACTGCA
Gene-mRNA-Prot
This mRNA is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
MSTRG.11594MSTRG.11594Clytia hemisphaerica_ch_hm2_pilongene
The following polypeptide feature(s) derives from this mRNA:
Feature NameUnique NameSpeciesType
MSTRG.11594.1.p1MSTRG.11594.1.p1-proteinClytia hemisphaerica_ch_hm2_pilonpolypeptide
The following exon feature(s) are a part of this mRNA:
Feature NameUnique NameSpeciesType
MSTRG.11594.1.p1.exon3MSTRG.11594.1.p1.exon3Clytia hemisphaerica_ch_hm2_pilonexon
MSTRG.11594.1.p1.exon2MSTRG.11594.1.p1.exon2Clytia hemisphaerica_ch_hm2_pilonexon
MSTRG.11594.1.p1.exon1MSTRG.11594.1.p1.exon1Clytia hemisphaerica_ch_hm2_pilonexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0000084_pilongenomesc0000084_pilon:1071708..1078349 -