MSTRG.11544.1.p1 (mRNA) -

Overview
NameMSTRG.11544.1.p1
Unique NameMSTRG.11544.1.p1
TypemRNA
OrganismClytia hemisphaerica_ch_hm2_pilon (Jellyfish)

Sequence
The following sequences are available for this feature:

mRNA from alignment at sc0000084_pilon:205295..209165+

Legend: five_prime_UTRexonpolypeptideCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>MSTRG.11544.1.p1 ID=MSTRG.11544.1.p1|Name=MSTRG.11544.1.p1|organism=Clytia hemisphaerica_ch_hm2_pilon|type=mRNA|length=3871bp|location=Sequence derived from alignment at sc0000084_pilon:205295..209165+ (Clytia hemisphaerica_ch_hm2_pilon)
GTACCTTGTCACTTTTCCTTGTGGATCACATGTGGCATAACTATAAATTT
AACAATgaaattattataaaaacattataaCACTTGTATCATCTTATATT
TAGGAATGAACACTTAAATGATAAATAAACCATGACATGTATAAATCGCA
CTCTGCTTGCATGCAGATTTTGCACTCAATTGAGGAAACCAACCGTGCTC
CCCAGTTCTTGTATTGCTATTCAAAGGTATCTGACAACATCAAAAATTCA
GTTTgatcaacaccaaatttctgAGAATGTTAAACCAGAGGCTGGAGCTC
TATCGACTggtcaaaaaggtaaaaataacACTCTTTGCTGCTCTTTGATG
GTAAACTTATAGTCTGTGATTTTGCTAACATCTTGGGCCTACCGCGAaga
taaattaacccatgttcatTTGTTCGTCcctctgtctgtctgtctgttac
CACCTTTGgtcaagattggctcattagttttttttaatttttggtacaGT
AGGTGTAAAATTGCAAtgttcagccaaaacattcATAACTGCGTTGCTTT
TTGCTTTAAACCATTCAAAAGCGAAAGCGATTGGGTTCTAATGCTCATGT
ATTGTTTATCGATTTGATTGACTATTGATTTTGGTGCAATTAATTTAATC
CAGTCAATCAGTACCCAAATcaagatgaaaaagatcaaaggaTCAAAGTG
GTGTGCAACCttggcagattttttttcacagcAATAGCCTTTAGAGTGAA
TATGTGCCATGTGCGGTTGTCGGAATCTTCTTGGAGATTAACAAAAATAG
gtctcaaattttctttcttttcatgaCCTGTACTCAATAAAGAAATTGTT
GGTCAGGATCTTTCATAAATTAAATCAATTTGGAcgctaaagaaaatttt
aattgataGACTTTATAATTATACAATGAGACCAACCTATCTCTTATTTT
TAGTGAAACAGGCTGGGAAAGATGCAAGTTATATGGGAATCATGCTACTT
GGCTTTGGTGTGACTGGTTGgtatattttaattttcaccAGAAGAATGAC
CCAAATAGTATGATCCTCTTTTTTAAGGGACTGTTAGAGCCATTGTTATA
TCACAAAATGGTAGGGGGGAGGTAGTAAAGGGAGGGGTAAATTATCCAGG
GGACAAAACTGTCCGGAAGTGGATTGTCCTGCAAATGAATTCTCAACTGA
AACTGTCATTGCATTATGATCTTAATGTTTCTTGTTAATTTATGGAGCTT
TTAGTTTAATATTAGAACATTTTCTTAGggagaaagttttgaattttaat
tttgaaaatccaaCGAAATTCAGAAAAAAGGATTCAAAAGATTGTAAAGA
TCTCCAATTTTAGTgttctaaaaataatttttcaatattttgtctCATGA
TAGTTTGATATTTTAGTACTGATATCCAGCCCTGATTTATGTGGTTGTGT
TGTAGAAAAATCACATAGATCCTaaattttgtcttctttttgatttttaa
ccttttttatgtgatgatttgataactgtttcatttttCTAGGTACTTTG
ATATGGTATGTGGTAGACGAATTGATGTTTGGCTTCAGTGCAAATTCAGT
ATACTCCAAAGCATTGAAATTAGTTAAAGATGATGATAGAGTAAGGTTTA
AGTTTCTACTTCTCGGGCAAGGTCCTGGCTTTTAAATAATGACATTGGAA
AACAAAGAATGCAGCTAATTTGttgtttaaaaatctgaaatttagAATTA
AACTTTATTTATTAGATTTATACTCTACTTTCGATTTTCCGAACAAAATT
TGGTCGATATTTCTTGGTACTTCTTTTACATAGATACAATATGAAATAGG
TGATAATCTCAAAGGCTATGGAGAAGAAACTTCTCGAGGAAGACGCCGTC
ATGTAACGTAAGTATCTATTATACTCGTTGGACTCTGAGAGGAAGAATGA
TCTTGTTTTATAAAAGTAAGCGATTAAAATCAAAAGTCCAAAAAGAATTG
TACAAGCGTACTACCTTTAATAAAAGCccaaacgttgtttaattttttag
ttttttggagGGCATTTAATTTAGAATACAAAATATGCCACTTTAGAGTT
GTTGAAATAGGGGTCAAGATAAGTTATCTTAATTACAATTAACACATATC
TAAGTTTTTTCTCCACAGGATTCTTTTACAGCTACTTGTTTTGAATGGAA
AAATTTTCCTTCGAGGGGAGGGcgtttattgtttcaaaaaatcaatttta
ggaAACGTTCTAGAGGGTCACCATTTTTCTGTATTTAGAGCATAATTTAA
AGTTAGAATAAGACCATGGGTTTTAATTTCGTAATcccaaaaaatataca
aatttgaCACTTTCAATTATCTTTTTGGTCTTATTATAGTTCTCAAGAGT
TTGTGGTGGATGGTGTGAACCATATGCGTGTGAGATTTTATTTATCTGGT
TCCAATCGAAAAGCAACAGTTCATTGTGAAGCTGTGGAGGTACGTTTGTT
TAGATTTACCTTCTGGGTTTAGTGAAAAAAGGTTCAAACATTTCAGCACA
CCTTGACGGGTTTTGTAGATTTgaataacttgaaaattttccacccagga
cattcttattccaacaccctccccccgcttattaatttttgagaacaTGT
CTTTgtaagttccctcttttgtcctaattccgCTGTTTTGGGACAaggtg
gagtttttacaagctcttatttaatttggttggtcgttaagatgtaataa
aagaatcttattactttttctaaagaacgcgtcatctctatcactttaaa
tgaccaattagtgaagtatcttgtaaaaactccaaggcatctcgctgttt
tagcctccttttcaaaaattttccgcccaggacatttttatttcaacccc
CTTATTAAGCTTATAAGcttataaagttttgatattttttccagCTCCCC
CTCTCCCACGGCTAACTCCAACCTccttagactagtaaactagtcgttga
aaacagacccatatacaaaaaatcaagctccaaataaaaagaatcgaagg
gatgaagttgcgtctcttttctgaatttcaacgactagaagctacttccc
tcaaaaaacgttgtttaattttacaactttttttaagtttttgagaatcc
atccaacttttttgactaaatgatattacatagtaacattgaacatggga
acatataaataaacgAGCATTTCTAAAatcgcaataaacagaaagaaaaa
taaatgcaatcccgcatgggtcagacatacagaaatctgtatgtctctcc
ttacgattttaggtgaagaaaaaaaggcgttggaagtagcttctagtcgg
ttattttccttttctctcacgcgcgctgaatatttaattagtgtttacat
tatttgattgacagttttattataagtaataaccgactagtttactagtc
tacaaCCTCCTCAgctattagatacccgagagtaggtgactttattgaaa
gaaaatggCTAGCCTATAgatatttttttgcctgcgtGTTCAAGAAATTT
GTGacgaatgaaaaaaatgatggcGTTGAAAACCTACCTTTAATTAGCTT
CAGCACGGAACCAACTATTTTTGGGAGGATGGAAAGGTTCGCCAGAAGaa
ctttgaattttcttttcttttctatagACATCAAGAGGCAAATTCGATTT
CCGTTATATCTTCGTGGAGATGCAAGGCTTTCCTCCCAGTGAACCAGTCA
TTGTGGTTGATAAcagataattttattttttttattcaaatttagttttt
ttataatttcataggcaagtacatattttttaagGCATGAACCCGAAAAA
GAGAATTCTAAATTTAATCta

Coding sequence (CDS) from alignment at sc0000084_pilon:205295..209165+

>MSTRG.11544.1.p1 ID=MSTRG.11544.1.p1|Name=MSTRG.11544.1.p1|organism=Clytia hemisphaerica_ch_hm2_pilon|type=CDS|length=3690bp|location=Sequence derived from alignment at sc0000084_pilon:205295..209165+ (Clytia hemisphaerica_ch_hm2_pilon)
ATGACATGTATAAATCGCACTCTGCTTGCATGCAGATTTTGCACTCAATT
GAGGAAACCAACCGTGCTCCCCAGTTCTTGTATTGCTATTCAAAGGTATC
TGACAACATCAAAAATTCAGTTTgatcaacaccaaatttctgAGAATGTT
AAACCAGAGGCTGGAGCTCTATCGACTggtcaaaaagTGAAACAGGCTGG
GAAAGATGCAAGTTATATGGGAATCATGCTACTTGGCTTTGGTGTGACTG
GTACTTTGATATGGTATGTGGTAGACGAATTGATGTTTGGCTTCAGTGCA
AATTCAGTATACTCCAAAGCATTGAAATTAGTTAAAGATGATGATAGAAT
ACAATATGAAATAGGTGATAATCTCAAAGGCTATGGAGAAGAAACTTCTC
GAGGAAGACGCCGTCATGTAACTTCTCAAGAGTTTGTGGTGGATGGTGTG
AACCATATGCGTGTGAGATTTTATTTATCTGGTTCCAATCGAAAAGCAAC
AGTTCATTGTGAAGCTGTGGAGACATCAAGAGGCAAATTCGATTTCCGTT
ATATCTTCGTGGAGATGCAAGGCTTTCCTCCCAGTGAACCAGTCATTGTG
GTTGATAAcagataaATGACATGTATAAATCGCACTCTGCTTGCATGCAG
ATTTTGCACTCAATTGAGGAAACCAACCGTGCTCCCCAGTTCTTGTATTG
CTATTCAAAGGTATCTGACAACATCAAAAATTCAGTTTgatcaacaccaa
atttctgAGAATGTTAAACCAGAGGCTGGAGCTCTATCGACTggtcaaaa
agTGAAACAGGCTGGGAAAGATGCAAGTTATATGGGAATCATGCTACTTG
GCTTTGGTGTGACTGGTACTTTGATATGGTATGTGGTAGACGAATTGATG
TTTGGCTTCAGTGCAAATTCAGTATACTCCAAAGCATTGAAATTAGTTAA
AGATGATGATAGAATACAATATGAAATAGGTGATAATCTCAAAGGCTATG
GAGAAGAAACTTCTCGAGGAAGACGCCGTCATGTAACTTCTCAAGAGTTT
GTGGTGGATGGTGTGAACCATATGCGTGTGAGATTTTATTTATCTGGTTC
CAATCGAAAAGCAACAGTTCATTGTGAAGCTGTGGAGACATCAAGAGGCA
AATTCGATTTCCGTTATATCTTCGTGGAGATGCAAGGCTTTCCTCCCAGT
GAACCAGTCATTGTGGTTGATAAcagataaATGACATGTATAAATCGCAC
TCTGCTTGCATGCAGATTTTGCACTCAATTGAGGAAACCAACCGTGCTCC
CCAGTTCTTGTATTGCTATTCAAAGGTATCTGACAACATCAAAAATTCAG
TTTgatcaacaccaaatttctgAGAATGTTAAACCAGAGGCTGGAGCTCT
ATCGACTggtcaaaaagTGAAACAGGCTGGGAAAGATGCAAGTTATATGG
GAATCATGCTACTTGGCTTTGGTGTGACTGGTACTTTGATATGGTATGTG
GTAGACGAATTGATGTTTGGCTTCAGTGCAAATTCAGTATACTCCAAAGC
ATTGAAATTAGTTAAAGATGATGATAGAATACAATATGAAATAGGTGATA
ATCTCAAAGGCTATGGAGAAGAAACTTCTCGAGGAAGACGCCGTCATGTA
ACTTCTCAAGAGTTTGTGGTGGATGGTGTGAACCATATGCGTGTGAGATT
TTATTTATCTGGTTCCAATCGAAAAGCAACAGTTCATTGTGAAGCTGTGG
AGACATCAAGAGGCAAATTCGATTTCCGTTATATCTTCGTGGAGATGCAA
GGCTTTCCTCCCAGTGAACCAGTCATTGTGGTTGATAAcagataaATGAC
ATGTATAAATCGCACTCTGCTTGCATGCAGATTTTGCACTCAATTGAGGA
AACCAACCGTGCTCCCCAGTTCTTGTATTGCTATTCAAAGGTATCTGACA
ACATCAAAAATTCAGTTTgatcaacaccaaatttctgAGAATGTTAAACC
AGAGGCTGGAGCTCTATCGACTggtcaaaaagTGAAACAGGCTGGGAAAG
ATGCAAGTTATATGGGAATCATGCTACTTGGCTTTGGTGTGACTGGTACT
TTGATATGGTATGTGGTAGACGAATTGATGTTTGGCTTCAGTGCAAATTC
AGTATACTCCAAAGCATTGAAATTAGTTAAAGATGATGATAGAATACAAT
ATGAAATAGGTGATAATCTCAAAGGCTATGGAGAAGAAACTTCTCGAGGA
AGACGCCGTCATGTAACTTCTCAAGAGTTTGTGGTGGATGGTGTGAACCA
TATGCGTGTGAGATTTTATTTATCTGGTTCCAATCGAAAAGCAACAGTTC
ATTGTGAAGCTGTGGAGACATCAAGAGGCAAATTCGATTTCCGTTATATC
TTCGTGGAGATGCAAGGCTTTCCTCCCAGTGAACCAGTCATTGTGGTTGA
TAAcagataaATGACATGTATAAATCGCACTCTGCTTGCATGCAGATTTT
GCACTCAATTGAGGAAACCAACCGTGCTCCCCAGTTCTTGTATTGCTATT
CAAAGGTATCTGACAACATCAAAAATTCAGTTTgatcaacaccaaatttc
tgAGAATGTTAAACCAGAGGCTGGAGCTCTATCGACTggtcaaaaagTGA
AACAGGCTGGGAAAGATGCAAGTTATATGGGAATCATGCTACTTGGCTTT
GGTGTGACTGGTACTTTGATATGGTATGTGGTAGACGAATTGATGTTTGG
CTTCAGTGCAAATTCAGTATACTCCAAAGCATTGAAATTAGTTAAAGATG
ATGATAGAATACAATATGAAATAGGTGATAATCTCAAAGGCTATGGAGAA
GAAACTTCTCGAGGAAGACGCCGTCATGTAACTTCTCAAGAGTTTGTGGT
GGATGGTGTGAACCATATGCGTGTGAGATTTTATTTATCTGGTTCCAATC
GAAAAGCAACAGTTCATTGTGAAGCTGTGGAGACATCAAGAGGCAAATTC
GATTTCCGTTATATCTTCGTGGAGATGCAAGGCTTTCCTCCCAGTGAACC
AGTCATTGTGGTTGATAAcagataaATGACATGTATAAATCGCACTCTGC
TTGCATGCAGATTTTGCACTCAATTGAGGAAACCAACCGTGCTCCCCAGT
TCTTGTATTGCTATTCAAAGGTATCTGACAACATCAAAAATTCAGTTTga
tcaacaccaaatttctgAGAATGTTAAACCAGAGGCTGGAGCTCTATCGA
CTggtcaaaaagTGAAACAGGCTGGGAAAGATGCAAGTTATATGGGAATC
ATGCTACTTGGCTTTGGTGTGACTGGTACTTTGATATGGTATGTGGTAGA
CGAATTGATGTTTGGCTTCAGTGCAAATTCAGTATACTCCAAAGCATTGA
AATTAGTTAAAGATGATGATAGAATACAATATGAAATAGGTGATAATCTC
AAAGGCTATGGAGAAGAAACTTCTCGAGGAAGACGCCGTCATGTAACTTC
TCAAGAGTTTGTGGTGGATGGTGTGAACCATATGCGTGTGAGATTTTATT
TATCTGGTTCCAATCGAAAAGCAACAGTTCATTGTGAAGCTGTGGAGACA
TCAAGAGGCAAATTCGATTTCCGTTATATCTTCGTGGAGATGCAAGGCTT
TCCTCCCAGTGAACCAGTCATTGTGGTTGATAAcagataa
Gene-mRNA-Prot
This mRNA is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
MSTRG.11544MSTRG.11544Clytia hemisphaerica_ch_hm2_pilongene
The following polypeptide feature(s) derives from this mRNA:
Feature NameUnique NameSpeciesType
MSTRG.11544.1.p1MSTRG.11544.1.p1-proteinClytia hemisphaerica_ch_hm2_pilonpolypeptide
The following exon feature(s) are a part of this mRNA:
Feature NameUnique NameSpeciesType
MSTRG.11544.1.p1.exon1MSTRG.11544.1.p1.exon1Clytia hemisphaerica_ch_hm2_pilonexon
MSTRG.11544.1.p1.exon2MSTRG.11544.1.p1.exon2Clytia hemisphaerica_ch_hm2_pilonexon
MSTRG.11544.1.p1.exon3MSTRG.11544.1.p1.exon3Clytia hemisphaerica_ch_hm2_pilonexon
MSTRG.11544.1.p1.exon4MSTRG.11544.1.p1.exon4Clytia hemisphaerica_ch_hm2_pilonexon
MSTRG.11544.1.p1.exon5MSTRG.11544.1.p1.exon5Clytia hemisphaerica_ch_hm2_pilonexon
MSTRG.11544.1.p1.exon6MSTRG.11544.1.p1.exon6Clytia hemisphaerica_ch_hm2_pilonexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0000084_pilongenomesc0000084_pilon:205295..209165 +