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Sequence
The following sequences are available for this feature:
mRNA from alignment at sc0000083_pilon:819492..824649+ Legend: five_prime_UTRexonpolypeptideCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below. >MSTRG.11485.1.p1 ID=MSTRG.11485.1.p1|Name=MSTRG.11485.1.p1|organism=Clytia hemisphaerica_ch_hm2_pilon|type=mRNA|length=5158bp|location=Sequence derived from alignment at sc0000083_pilon:819492..824649+ (Clytia hemisphaerica_ch_hm2_pilon)
CACTTGTTCAAATACTACTCAAAGATGGGGGttaaatacatttattttca
aCATGTAAATATATTTGATATATAACCCCCTGATGAGTTGATCGAACTCG
TAAACGTATAAACACGGCAACAGAGCCCTCTAAACCATCATTCGTCAAAC
ATCCTTCCACGACAATGGATAGTAAAGAAGAAAGCGGAACACAAAATGAC
ACCATCCCATCACCGGATAGTGTAGACTACGGATGTCCGTGCTGCCAACC
AAAGCGACGCTATCCACCGCCACCTTGGTACCATCAACACTACTCTTCAT
ACCACCATCATCAACATAGACCACCCTCCACGGAAGGATCACGCTGGCCA
TTTATCAGCCCACCACCACCGCTGCCACCGAGCAGTTCTCCACCGCACCG
CTCTCCGCCCCCTCCACCGACGGCCATGAAAGGATGTTGCGATAAGAGAA
CTTGCTATACACCGCTTCATCACCAGTTTCACCACCATTCACCGCATTAC
GGTAAGACATAATCATTTCCTGTTTTTATTTCTACGACTACTTAGTTCTA
ATTCAGACGGACTAACTCCTGCCTTGTTGGTATGTTTATATGGATTTTCG
GAACGCGCACGGGAGTTTCTTTAGACCAAGTTATCGCGGATGTTACAGTG
ATAGGGTGGAAAATATTATACGCGCCCAGAGTTAACAGCCACTATGGTGG
CAGACGGaaaaaaaGcggtagagtttcgaagaaacttGCAATTTctaact
cttttcggcaaaaaactcgtttttgaattttctttggcttggggcttatt
tcttagatagtgatttgtcttagactttAGCATAGTCTAGATTTTACTGA
GCCCAAATTCTTGTACGGAATTTTCTTACACGTACTCAGGGGCTTACTTC
TGATCTTTTAAATATAAATGAGTGACGAGGTCATATAATTTCATGTTTAA
TGATGTATTCCTTATAATAGCTTTTATATAGTTGTTTTTACTCGGCAATG
TTGTCGAGCTCgagttaattttttgaatttatgattattttttttcaaca
gaTACCTTCTTCGGCCACCACGACATGTCAGAGCCGTTAGCGCAATTTCA
TCGTCAAAAACGTTTCCGTCGTATGCGCATGCGTACTAACTTTACGTCAT
GGCAACTGGATGAATTAGAAAATGCTTTCCAAAAGACTCATTACCCAGAT
GTTTTTATGCGTGAAGAACTTGCCATGAAATTGCAATTATTGGAATCTCG
TGTGCAGGTTAGTTCACTGTCAttttttacggaatctgtttattttttat
tttgttgggtATATTCGAAACTATTccttgatagaccttttcataaatca
cgttacgaacatcagttgcctcgttttcaaacgattgctatggtgattat
gtcccttgagagattaaatgatttttatatgaatagaaagtagttttaat
aaaatccgctgggagtaaATCaccttgacaataatttgcttgGGATTTGA
AGTTCTCATATTTTTGTTTAGTAATTTTAACTAGCATTTTTTGATCTGGA
TTTGCATTATTCATGTGGCATCGATTTGagggttttattttcaaacgGGA
GATGCCGAAATATCTGGTTTTCCGgttttactttcttttcttaTGGCAAA
CTTACCATAAAGCTTGGTTCCTACTCTGATTTTCTAAATAGCAAAGCGAA
AGTTCTGGCACTCTGTATATTTGGCTAACTTTTACTAGCGAGACCCTAAT
TATAAACATATGATACATATTCTGAAGATTATTATGTTGTATCATTTTAA
AATTGCTTTACCGTTAGGTTTGGTTTCAAAACCGCCGTGCAAAATGGCGT
AAACGCGAACGTCACATCGAAGATGGCGGAGGCGCAACGGATAAAAACAA
CAACGAaaaagatgacgtcattcaagATGCCACGAAAGATCAAAGTCCAT
CTTCAAGTCCATTTTCATTGGTTGACGAAAACGATGTTTCTGATCGGGAA
ATTGATATCACAATGGCTggaaatcgggaaaatcgggtTGACGAAAGAAG
AATCCCGATTTCGAAATCAACACACGAGGTATCGAAATCACATAATTCGA
GTGGTAAAAAACAGTTTTGCATCGAAAACATTCTGACGGATAAGATTTCG
AATAATAAGAAATTTCAACAATCGTCTTCAAACATACACACAAAGACTGA
GTATGAGCCAATCATTATCTCAACTCGATTCTCTGGAGACTCTTTAACCC
ATCCACATCAATATTGTGAAAGCCCATCACCTGTTAATAGTTGTGGCGGG
GTAGCTACATCtcataaatttgaaaagtaacaGCTATTTTAAAAGTAGAa
caaaaattatataagaaaaatCCTTATGATTTATCCCACTAATTACTTGA
TTTCTTAAAAACTACTAATGCCACGAAGAACTTTTGCTTAAGAAAATTAC
ATTTATTTAAGTTTTAAACTTATAATTATTTATAGGTAAATTTTATCGAG
TGTCGACAATAACCAAAGATCAATGGTTCTTTTCCTGGACTTTGCATCTT
TTAAGATGTCAGTGAAGCTTGCAGAATTTGTTGCTCTTTATGTCTGAATT
TTTAGACTTTgaaataaagtttttcatgtAAATACTTGTCAATAATTAAT
TTAACGTATTATGAAACAGATTTTAATGAGTGTAATTAgaagaaaatgtt
taaagaaTAAGTTTTAAGTACACAAACCTGATTTTAACCCGGTATGCCCG
GAAAAAACAGCGGAAAGATCAGTTCCCCATTATTAATGAGATGTTCagtc
cattgagtttcaagcccaaagggctagaggcgagactcctggatgggaaa
tgaaaccaattatttcccatccagaacgcccgcgcgtagttttacACAAA
CGCAGGATTGATACTAAAAtatatcgctagatttaaaaaaatgttgtcct
ccaaaacaaagaaaccactagatacaatccgtcgtcatgattacggcgcg
ttctaagcgcgttttggatgggaaataagtggcttcaatttctcttgcct
gagaagggttaaagtttcgcctctatcccttcgggcttgaaactgaATGG
TTCAGCCAGCCTACGGTATGGAGTGAGGGCATTTAATTGAGTTCAGTGCT
CGACATGCCAAATGAACAAGCAGGACCAGGAAGACAAAGAAATGATAGAC
TTTTTGGttcctttcgaaaaaaaaattatattttaaaatccatttcaatc
tttttttatatatatacttttttaaatttttggtaaACTGTATCATAAAA
AACTTGCTCGAGTTCACCACAAACCTCTCCAAAACGTGAAAGGGATTTAG
GcggtgaaaatatttttcatcaaacttCAAAAGACCTCTATACaaaaaaa
GTCGACTAAATCCAATCTGTAAAATAACGTTGACATCGGTTTGCAGTGAA
CCCTTTTCAATCATAAAAACACAAACTTAGGGAAAatcgatttctttaaa
aaactgagATGAGGGGACAAGCAAAGGGTCTCGCGAAGCATACAAAAAAG
ATAGAAAATGTACAATTTATATACACTAAGAAAATATAAGctaaaacctt
tttttgctGTTTATGAAAATCCAGTCGGACCAGTGAAGCGTTTGGCTTTA
CCGAGTTTTCTCTCAATCCTTTTTAAGTTTTGTAAGAAAACGCAAaaaca
acaagcaacatgctgaatggacctacctgatgatgaaacttaaatagcaa
taaggagaaaaacaatcattaagaaaatatagcgcttagcgaaaatgcat
taaatgtcatcattgattgttgatgggggggggggggaggggtttaggga
aaaaagaaatagaaagttccggttgcagaattgcaaaagttttattgaca
attggatcatgcttgatggtggcattgttatcaataatttttttaagtga
aaaaacaaagaaatgtatagaaaaagcccaattcaaatctgcaaaaacgg
cgatttccggcatatttccggcattttcggccggaaaaatttttttctca
aaaatcagactcgaCAAtgatttgggcattgttaatacgcatctttgagc
aaaaaatcagaaaaaactaatgataaaatctcgagaaaatgccaaaaaac
ctgtttttccggcatatttccggcattttcggccggaaaatttttttttc
caaaatcgggctccgtcacattttaggtattatcattttgcatcagtgtg
caaaatttcataaaaaaatataaagtacagctcgagaaaatcaagaaata
ccgtttttccggcgaaaatgggctgcaccggcgatttttagaaagttccg
gcttcaaaactcagttctattgacgattgaaccatgcttcatggtgggca
ttgctattaataatgtttttgtgtgaaaaaacaacgaaatataaggaaaa
agtccgatgaaaatctgcaaaaatggcgatttccggcatatttccggcat
tttcgaccggaaaattttttttcccaaaaatcggactcggccaagttttg
ggcattgctaatacgcatctttgtgcaaaaaatcagaaaaaactaatgat
gaaatcttgagaaaatgccaaaaaaccggtttttccggcatatttccggc
attttcggccggaaatgattttttttcgaaaatcgggctccgtcacattt
tgggcattaccattttgcatcatggtgccaaaaatcaaaaaaaactaatg
agccaatcctgagaaaagctggtaacagacggacggacgaacagacgaac
agacggacatcggttaatttataggacctctaccccaccggggtaggtcc
aaaaaaactgTATCAAATTCTTAAGGCTATATATAATACACGCATACTAT
GAACAAGCTGAGAAAGGAAACATAAACTGGATAAAACAGAATTCTTCAAA
TCCCGCGCTAAAGTGGAAACCGTCGTTAAATAttcaaggctcgaaataac
gatttcaagtgggtcggacaaaatgtccgatcaggaTTGCTTTAGCCTGA
AAATTAcgatttttgggtcggacatgaagctatttgggtcggacaatgtc
cgatgtccgaccgttatttcgagccctggtATTACGAGGTAAGCTTCCTA
GTTTTTCA Coding sequence (CDS) from alignment at sc0000083_pilon:819492..824649+ >MSTRG.11485.1.p1 ID=MSTRG.11485.1.p1|Name=MSTRG.11485.1.p1|organism=Clytia hemisphaerica_ch_hm2_pilon|type=CDS|length=3168bp|location=Sequence derived from alignment at sc0000083_pilon:819492..824649+ (Clytia hemisphaerica_ch_hm2_pilon)
ATGGATAGTAAAGAAGAAAGCGGAACACAAAATGACACCATCCCATCACC
GGATAGTGTAGACTACGGATGTCCGTGCTGCCAACCAAAGCGACGCTATC
CACCGCCACCTTGGTACCATCAACACTACTCTTCATACCACCATCATCAA
CATAGACCACCCTCCACGGAAGGATCACGCTGGCCATTTATCAGCCCACC
ACCACCGCTGCCACCGAGCAGTTCTCCACCGCACCGCTCTCCGCCCCCTC
CACCGACGGCCATGAAAGGATGTTGCGATAAGAGAACTTGCTATACACCG
CTTCATCACCAGTTTCACCACCATTCACCGCATTACGaTACCTTCTTCGG
CCACCACGACATGTCAGAGCCGTTAGCGCAATTTCATCGTCAAAAACGTT
TCCGTCGTATGCGCATGCGTACTAACTTTACGTCATGGCAACTGGATGAA
TTAGAAAATGCTTTCCAAAAGACTCATTACCCAGATGTTTTTATGCGTGA
AGAACTTGCCATGAAATTGCAATTATTGGAATCTCGTGTGCAGGTTTGGT
TTCAAAACCGCCGTGCAAAATGGCGTAAACGCGAACGTCACATCGAAGAT
GGCGGAGGCGCAACGGATAAAAACAACAACGAaaaagatgacgtcattca
agATGCCACGAAAGATCAAAGTCCATCTTCAAGTCCATTTTCATTGGTTG
ACGAAAACGATGTTTCTGATCGGGAAATTGATATCACAATGGCTggaaat
cgggaaaatcgggtTGACGAAAGAAGAATCCCGATTTCGAAATCAACACA
CGAGGTATCGAAATCACATAATTCGAGTGGTAAAAAACAGTTTTGCATCG
AAAACATTCTGACGGATAAGATTTCGAATAATAAGAAATTTCAACAATCG
TCTTCAAACATACACACAAAGACTGAGTATGAGCCAATCATTATCTCAAC
TCGATTCTCTGGAGACTCTTTAACCCATCCACATCAATATTGTGAAAGCC
CATCACCTGTTAATAGTTGTGGCGGGGTAGCTACATCtcataaatttgaa
aagtaaATGGATAGTAAAGAAGAAAGCGGAACACAAAATGACACCATCCC
ATCACCGGATAGTGTAGACTACGGATGTCCGTGCTGCCAACCAAAGCGAC
GCTATCCACCGCCACCTTGGTACCATCAACACTACTCTTCATACCACCAT
CATCAACATAGACCACCCTCCACGGAAGGATCACGCTGGCCATTTATCAG
CCCACCACCACCGCTGCCACCGAGCAGTTCTCCACCGCACCGCTCTCCGC
CCCCTCCACCGACGGCCATGAAAGGATGTTGCGATAAGAGAACTTGCTAT
ACACCGCTTCATCACCAGTTTCACCACCATTCACCGCATTACGaTACCTT
CTTCGGCCACCACGACATGTCAGAGCCGTTAGCGCAATTTCATCGTCAAA
AACGTTTCCGTCGTATGCGCATGCGTACTAACTTTACGTCATGGCAACTG
GATGAATTAGAAAATGCTTTCCAAAAGACTCATTACCCAGATGTTTTTAT
GCGTGAAGAACTTGCCATGAAATTGCAATTATTGGAATCTCGTGTGCAGG
TTTGGTTTCAAAACCGCCGTGCAAAATGGCGTAAACGCGAACGTCACATC
GAAGATGGCGGAGGCGCAACGGATAAAAACAACAACGAaaaagatgacgt
cattcaagATGCCACGAAAGATCAAAGTCCATCTTCAAGTCCATTTTCAT
TGGTTGACGAAAACGATGTTTCTGATCGGGAAATTGATATCACAATGGCT
ggaaatcgggaaaatcgggtTGACGAAAGAAGAATCCCGATTTCGAAATC
AACACACGAGGTATCGAAATCACATAATTCGAGTGGTAAAAAACAGTTTT
GCATCGAAAACATTCTGACGGATAAGATTTCGAATAATAAGAAATTTCAA
CAATCGTCTTCAAACATACACACAAAGACTGAGTATGAGCCAATCATTAT
CTCAACTCGATTCTCTGGAGACTCTTTAACCCATCCACATCAATATTGTG
AAAGCCCATCACCTGTTAATAGTTGTGGCGGGGTAGCTACATCtcataaa
tttgaaaagtaaATGGATAGTAAAGAAGAAAGCGGAACACAAAATGACAC
CATCCCATCACCGGATAGTGTAGACTACGGATGTCCGTGCTGCCAACCAA
AGCGACGCTATCCACCGCCACCTTGGTACCATCAACACTACTCTTCATAC
CACCATCATCAACATAGACCACCCTCCACGGAAGGATCACGCTGGCCATT
TATCAGCCCACCACCACCGCTGCCACCGAGCAGTTCTCCACCGCACCGCT
CTCCGCCCCCTCCACCGACGGCCATGAAAGGATGTTGCGATAAGAGAACT
TGCTATACACCGCTTCATCACCAGTTTCACCACCATTCACCGCATTACGa
TACCTTCTTCGGCCACCACGACATGTCAGAGCCGTTAGCGCAATTTCATC
GTCAAAAACGTTTCCGTCGTATGCGCATGCGTACTAACTTTACGTCATGG
CAACTGGATGAATTAGAAAATGCTTTCCAAAAGACTCATTACCCAGATGT
TTTTATGCGTGAAGAACTTGCCATGAAATTGCAATTATTGGAATCTCGTG
TGCAGGTTTGGTTTCAAAACCGCCGTGCAAAATGGCGTAAACGCGAACGT
CACATCGAAGATGGCGGAGGCGCAACGGATAAAAACAACAACGAaaaaga
tgacgtcattcaagATGCCACGAAAGATCAAAGTCCATCTTCAAGTCCAT
TTTCATTGGTTGACGAAAACGATGTTTCTGATCGGGAAATTGATATCACA
ATGGCTggaaatcgggaaaatcgggtTGACGAAAGAAGAATCCCGATTTC
GAAATCAACACACGAGGTATCGAAATCACATAATTCGAGTGGTAAAAAAC
AGTTTTGCATCGAAAACATTCTGACGGATAAGATTTCGAATAATAAGAAA
TTTCAACAATCGTCTTCAAACATACACACAAAGACTGAGTATGAGCCAAT
CATTATCTCAACTCGATTCTCTGGAGACTCTTTAACCCATCCACATCAAT
ATTGTGAAAGCCCATCACCTGTTAATAGTTGTGGCGGGGTAGCTACATCt
cataaatttgaaaagtaa
Gene-mRNA-Prot
This mRNA is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this mRNA:
The following exon feature(s) are a part of this mRNA:
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| sc0000083_pilon | genome | sc0000083_pilon:819492..824649 + |
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