MSTRG.11476.1.p1 (mRNA) -

Overview
NameMSTRG.11476.1.p1
Unique NameMSTRG.11476.1.p1
TypemRNA
OrganismClytia hemisphaerica_ch_hm2_pilon (Jellyfish)

Sequence
The following sequences are available for this feature:

mRNA from alignment at sc0000083_pilon:666162..668918+

Legend: five_prime_UTRexonpolypeptideCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>MSTRG.11476.1.p1 ID=MSTRG.11476.1.p1|Name=MSTRG.11476.1.p1|organism=Clytia hemisphaerica_ch_hm2_pilon|type=mRNA|length=2757bp|location=Sequence derived from alignment at sc0000083_pilon:666162..668918+ (Clytia hemisphaerica_ch_hm2_pilon)
GAAATTCTTTGGGTTTAAGATGGTTTTATGAAGAGTTGTGTGAAGTATTT
GAATTCAGATTGTGGTTGGATGTTGAAAGGTCAACATTTCATGGCGATAG
CACAGTTGATAGTTACGATAGGTAGATATGAATTATGTGAATTCTTTCAG
CTTATTTTTGATTCTTTGACTGGTTCTGGAATGTGATGATGTTGAAATGT
TTGATCTGAAGATTCGATCATAGTTCAATATGGTTcccacccagctggca
cacaactttgtttcaacgtttatctaacgttcacaacgtccatttaacgt
tagattaacgttgaaacaacgttgtgtgccagctgggcaacTACTATCAG
TTTCAAGATGGCAAGTAAGCTAATCAGACCGATTCAAAAAGTGTATATAT
AAACAAGACTAAATAAAAGTAAGTTACATATAGTAGTAAAATGACTTGAA
TCAATGTTGATGATGATTAGAAATCGGTAGAAAAGACTTTTAAAATCCAA
TGATTGATGTAATGTGAATGCGAGAGCATGGCCAGCGAAATGATGTCAAA
CTCAAAGGAATTTTTGTGCGATAATCTTATCATCTCTGCTGCCAGCAACT
CACATTTGCATTATCAAAATCATaggatttcaaaaatcaaagtaaagGAG
AAGAAAGCAAAAATAGCTTCTGATATCATTGGGATAATAAGTCTTTCAAA
AGTCTGCTGTAATTGATTAGAAATCACTAATTTTGACGTCAACTTCAATT
TGAAATTAATGGTCAAATGGGTTGATTTGTTGTAACCATTATTGCTTTTT
AATTGAAGAAAATTCATTAATTTTACGATTGGTGTCAAAAAGTATAATTA
ATTTGCAAATTAAATCTTCATGTCAGCAGGCATAACCtagtattttgttg
ttttttttggcttACTTAACTACCGGGAAAGAAGAATGTGTACAGAAAGT
AGATCAGTTAGCGATTTTTGATATAATCTTTTGGACATTCGGTTAATAAA
CGGGTCATACATTCAAACGTCGACATCTAAATTATTAACTCGTCATCTtt
gttttttagagatttctaAGAACAACAAACTAACAGAGCGAAAGAATTAT
TGATGATAAACAAATATCGAAAGAAACCAGGgagaaatttgatgaaataa
cACAACAAAACGAGATCAACAACATGTTTCACTGGAGATGGACCTTTGTT
TTCGTGGTTGCTTTGGttatcgatgacgtcatcagctcaCAAAATTGTTC
TACGAAGTGCCGATGCACAAAAACATTCACATATTGTCTTTATCAAGATA
TCACATCAGAAGAACTCGTAAATATCTTACCAACTATTCCAAAAACAACA
GAGAAATTATATCTTGGAGGAAATAAAATTACGCACGTTAATATGGAAGA
GTTTTCTCATTTGACAAAATTGACATATCTATCGCTGAATTTCAACAAGT
TAACAAAGCTACCGGACAGAATCGGACATTTTCTACCGCGACTGCGCATT
CTACACCTCACAGCCAACCAAATCAAGACcatttcttctgaaaatttaag
aaattacGATAACTTAAGAGTCCTGAATCTTGATCAAAACTCAATCAAAG
TAATCGGTGAAAATACATTCGATAAAATGTCGAATTTGCAAGAACTTCTT
CTGGGTCAAAACCAGATTAGTGATATCAATCAAAACACTTTCAACGGGCT
GAGAAATTTGATCAAGTTACAATTAAGTgataacaaaatcaaaacaatcc
aCGAGGACGTCTTCCAATCAACACTTCAACTACAAGAGTTATATCTTGAA
GTCAATAAAATCACTCACATAccaaaaggtctattttacaGACTGACCAA
ACTACGTATCATCTATTTGAGCGACAATTTCATAGCACATATTGAAGAAG
GCGCTTTTGATGGTCTGAGACTTGAGACTGTGTATCTTAACCTTAATTTA
CTCGAGAAATTGCCaaataatttattcaaaaacacTGACATTATACGAAA
CGTCTTTTTATTGGATAATCCTTTCCAGTGTAGTTGCCAACTGGCCACAG
CTGTAGCGGACGCGCGACAAAACTTGAAATCATCACGTCATAAAGTTCAT
TTCGGAGATTGTAAACTTCATTATGGAACTATAATGTCAGTTGAGGGTTT
AACAGTAGAATCATTAAACTGTACGGCGTGCGATTTGAACCAGTGTCCTC
TTATGACAAACTGTACTTTGGAAGCATCTGAAAAAGATGGCTACGTGTGT
ATGAAATACATTGGCGATTTAGTTGATCAATCAGAAACGAACTCAAGACA
CTCTTCATCGAATGCGCAGAAAATTTCCAGTCATATTTACTTAATCGTGG
CAGTTATCTCAATCCTTATAGTCGTATGTTTAATAATCGCCGTTATCTTG
TTTATAAAGAGTCGGCAGAAAAGAAAAGCCTTCAAAATTGACAATAAATA
TATTTATGAGCAAGTTGATAATAAAAGGAcaccaaaattgaccaatttga
AAGCTAAAAACAGTTTCAATGTTGTGGTACAAACACCAGTTCGGATGAAA
CAATACTTCGTTTGATTGTGACATCAAGCCTCgtcaatttagattttttt
ttgtacatatgttaaaatgttgatttttattttttacaaatttttatttt
gaaaaatttaatatatttattttgagacaaagagcgcgtaaaattttgta
tatttttaaaaCGTATCTAATAGAATAAATAATCAAGGAAAACActttga
aattaaa

Coding sequence (CDS) from alignment at sc0000083_pilon:666162..668918+

>MSTRG.11476.1.p1 ID=MSTRG.11476.1.p1|Name=MSTRG.11476.1.p1|organism=Clytia hemisphaerica_ch_hm2_pilon|type=CDS|length=1392bp|location=Sequence derived from alignment at sc0000083_pilon:666162..668918+ (Clytia hemisphaerica_ch_hm2_pilon)
ATGTTTCACTGGAGATGGACCTTTGTTTTCGTGGTTGCTTTGGttatcga
tgacgtcatcagctcaCAAAATTGTTCTACGAAGTGCCGATGCACAAAAA
CATTCACATATTGTCTTTATCAAGATATCACATCAGAAGAACTCGTAAAT
ATCTTACCAACTATTCCAAAAACAACAGAGAAATTATATCTTGGAGGAAA
TAAAATTACGCACGTTAATATGGAAGAGTTTTCTCATTTGACAAAATTGA
CATATCTATCGCTGAATTTCAACAAGTTAACAAAGCTACCGGACAGAATC
GGACATTTTCTACCGCGACTGCGCATTCTACACCTCACAGCCAACCAAAT
CAAGACcatttcttctgaaaatttaagaaattacGATAACTTAAGAGTCC
TGAATCTTGATCAAAACTCAATCAAAGTAATCGGTGAAAATACATTCGAT
AAAATGTCGAATTTGCAAGAACTTCTTCTGGGTCAAAACCAGATTAGTGA
TATCAATCAAAACACTTTCAACGGGCTGAGAAATTTGATCAAGTTACAAT
TAAGTgataacaaaatcaaaacaatccaCGAGGACGTCTTCCAATCAACA
CTTCAACTACAAGAGTTATATCTTGAAGTCAATAAAATCACTCACATAcc
aaaaggtctattttacaGACTGACCAAACTACGTATCATCTATTTGAGCG
ACAATTTCATAGCACATATTGAAGAAGGCGCTTTTGATGGTCTGAGACTT
GAGACTGTGTATCTTAACCTTAATTTACTCGAGAAATTGCCaaataattt
attcaaaaacacTGACATTATACGAAACGTCTTTTTATTGGATAATCCTT
TCCAGTGTAGTTGCCAACTGGCCACAGCTGTAGCGGACGCGCGACAAAAC
TTGAAATCATCACGTCATAAAGTTCATTTCGGAGATTGTAAACTTCATTA
TGGAACTATAATGTCAGTTGAGGGTTTAACAGTAGAATCATTAAACTGTA
CGGCGTGCGATTTGAACCAGTGTCCTCTTATGACAAACTGTACTTTGGAA
GCATCTGAAAAAGATGGCTACGTGTGTATGAAATACATTGGCGATTTAGT
TGATCAATCAGAAACGAACTCAAGACACTCTTCATCGAATGCGCAGAAAA
TTTCCAGTCATATTTACTTAATCGTGGCAGTTATCTCAATCCTTATAGTC
GTATGTTTAATAATCGCCGTTATCTTGTTTATAAAGAGTCGGCAGAAAAG
AAAAGCCTTCAAAATTGACAATAAATATATTTATGAGCAAGTTGATAATA
AAAGGAcaccaaaattgaccaatttgaAAGCTAAAAACAGTTTCAATGTT
GTGGTACAAACACCAGTTCGGATGAAACAATACTTCGTTTGA
Gene-mRNA-Prot
This mRNA is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
MSTRG.11476MSTRG.11476Clytia hemisphaerica_ch_hm2_pilongene
The following polypeptide feature(s) derives from this mRNA:
Feature NameUnique NameSpeciesType
MSTRG.11476.1.p1MSTRG.11476.1.p1-proteinClytia hemisphaerica_ch_hm2_pilonpolypeptide
The following exon feature(s) are a part of this mRNA:
Feature NameUnique NameSpeciesType
MSTRG.11476.1.p1.exon1MSTRG.11476.1.p1.exon1Clytia hemisphaerica_ch_hm2_pilonexon
MSTRG.11476.1.p1.exon2MSTRG.11476.1.p1.exon2Clytia hemisphaerica_ch_hm2_pilonexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0000083_pilongenomesc0000083_pilon:666162..668918 +