MSTRG.11475.2.p1 (mRNA) -

Overview
NameMSTRG.11475.2.p1
Unique NameMSTRG.11475.2.p1
TypemRNA
OrganismClytia hemisphaerica_ch_hm2_pilon (Jellyfish)

Sequence
The following sequences are available for this feature:

mRNA from alignment at sc0000083_pilon:647919..653207-

Legend: exonfive_prime_UTRpolypeptideCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>MSTRG.11475.2.p1 ID=MSTRG.11475.2.p1|Name=MSTRG.11475.2.p1|organism=Clytia hemisphaerica_ch_hm2_pilon|type=mRNA|length=5289bp|location=Sequence derived from alignment at sc0000083_pilon:647919..653207- (Clytia hemisphaerica_ch_hm2_pilon)
AGGAAATGAAGACGATCCATCCATATGAAGTCAGGTTATGTATTAATTGA
AAATCTTAAAACACTTTAACACACAGCAAATTTTTCGGATTCAAAAAATA
TTCAATTTTGGTTTGTGAACAAAAATTTATGATATGATTGGTGTTTTCGT
GATACAATTTTTTCTTTTATCCGAAACAACAATAAAACGGATATCCGTTA
AAATTTCATGGCTCTGCTCCTTCCTAATCATTCTGATTCCGATTTTGAGG
GATCTTACGCGGGCTATGGGGAGATTGATCTAAAATCTAACATTTCACAA
ATCTACTTTCACCAGAAGTCAACACCGTCTAGCAAAGGGATGTCAACATT
AGACTAATTGCGTGGATAATGGGTTTTAGACCTTTTGTTATCAATAAACA
GATGGATAGACAGTTTTAGGTTTTTCAAATCCCCCATTTGGATTAAACTA
ATACAGTTATAGTGCAGTCTAAATGTGCCAAAAGTCATAAACATTGTGCA
CAAGGGCGTAAAAGCATGAAACTTTGCACAATGGTACCGTAGAGTCGTTT
AATCTCGACATACGTCTTGCAATCTCGACACCGGATCTGTAAAATAATCA
AAACAAACCTTGAATGAAATTCTTGGTATCATTCTTATCGAACAAGTTCA
TCCATCAAACTAGAAGTTCAGTAAACATTGCAATCCTTTCAATTAAAAAG
AAAGCCAAATTATAAGCAGTTTTACACAACACACGAAACGCATGCAAACT
TCCTCGTAACTTTCTCGTGTCCATCATTAAAATTTTACAACTTTATTACG
CTTCAAGTCACGTGATAAAAATAATTCGCGCGCTTAGCCTGGTTTCCCCT
TCCTTATATATAAAAACACACGCTCTTGGCGCTAACAGGTCGCACGCCGG
GATGGCCAGTATGGCGGTCACATTAAATTCAAAAGGAAACCGGGTTCTTT
TTATTATTTTCGGTTCACGGTAAAAATGTCTACTAAAAAATTCCTCGCGT
GTTGTGTTGTTTTGATTTAGACATCTTCGTTGAAAGCATGCTAATTAGTT
TTTAGCGATTACTACATCGTTAAAGTTTTCTTTTCAAATATAAGTATAAG
TAATAACACTTCACATTTCTCATATTATATTAACAATCTGTGACGTGATA
GAGAGAGAGTACATTTTAGTGATTGATTGATAACTTTGGTATGTATTTGT
TTATATTTAATTTTTTATTTCGAAGACCAGCCTACAGCTATGTCGAGATT
GCAAGACGTATGTCGAGATTAAACGACTCTACGGTAGTTTAGGGGTCAAA
AATGGATTTAAATCTCAGACCCAAAAAATTGGCACCTGTTTGTGTATTTT
ACAGACCAGAATAGGTTTCCAAGCTAAAATGAAAATCTTTTTCTCCAAAG
TATGTCATGTTACATACCGTTGGAAAGCATGTTTCATGCCCGTTCAGAAA
AACATTACAACCCATATCTGAAAATGAAGCCAATAAGAGTTTTTGGGGAA
GGTTGTTTAAAAAATGACCGAAAATGACGTAATTGCTGATGTCAGCAAAA
ATTCCAGGACCACCCAACCGTGTTTATTTTTGTGAAATTCAATAGAGTAC
CTCTCAGGTACTAAATACTATTGGTTAGATCAGCTGCAAGCTTATTTTAC
AATAGTTTTTTTGAGTATTGATAGGTTGACAAATTTTGCCTTAGTAATGC
TCAACCATGGGCATGCCCGGTGCAAACCCTTTAGCCTAAGGCTTTCGACC
GGTCATGAAAAGGCCATATTCTATGTCAAGTGAGGTTAACTCTCAAGCAA
AGCTATCCATTTGGTCATTGAAAGATCCTCTATTGAATTTCACAAAAATA
AACGTGTCTATGTGGTCCTGGAATTTTTGCTGACGTCAGCAATTATGTCA
TTTTCGGTTATTTTTCAAACAACCTTCCCCAATAACTTTTATTGGCTTCA
TTTTCAGATATGGGTTGTAATGTTTTTCTGAACGGGTATGAAAAATGCTT
TCCCAACGGTATGTAACATGACATATTTTGGAGAAAATAATTTTCATTTT
AGTCTGGAAACCTATTCTGGTCTGTAAAATACACAAACAGGTGTCAATTT
TCTGGGTCTGAGATTTAAATCCATTTTTGACCCCTAAACTACCATTGTGC
AAAGTTTCATGCTTTTACGCCCTTGTGCACAATATTTGCACAACTAGACC
GTACTATTACTAACTTCTTTTAAGGTAAAAAGGGACCCCTACCCCCTGAT
CAAGCTGTAAAGGGGGGAATGGGTCTATGATGGTTTATGCCATCAAGAAT
TGTAAAAAAGAGAGAAATCTCACTTACAATGGAAGCTCCCTTAAAGTGTC
CCAGCGTCTTAAAATATACTTCAAAAGGAGACATCCACCCCTTTTGTCAT
TCTTTTTCTATCATTCATGCAGGAATATGCCCTATTCCCATCCCTCCCTG
ACTCATTTCTGGCTAAATCCTAAGGTCACAGCTCAAATTCACATGTTTTT
GTGTGCAAAGAAAAGAAGAACTTTAGTGAATCAAACAAAGGTGTAAGAAT
TTTTGGCAATTAGAAAGGTGGGAGAGATGGTCAGAGAGAGAGTCTTATAA
AAAAGGTTGTCTTTTTGTTGACAGCCCCTTAGTTTTGTTATTAAGTTCAC
AGTTTCTGTACGCCAATAGTTATCACACAAATTTGAATCAATTTTCACAC
AGGTACTAATTCTCAAATAATATGTCAATAACCAAATATCAAGGATGTTT
GTTAGGAGCCTTGATAGGTGATTGCATGGGGGCACCTTTTGAAATGAGCT
ATTTTGGTCGAAATGGAATAAAAAGAGAAATCATATTGAATAAGCTGTCA
AAGACCCTTGAGAAGAAAGAAAGCACTTTTGGATATACAGGTTATCTTAA
AAGTTGTTGTTTTTCCTTATTTTCTAGGTTTTTGTATATATATACCAAGT
TGTATGGATTTTTTTTATAACCAATTTTCAATGAAATTGCTTTTTTCTTG
TTAGTATATTTACCAAATCTTTTAAAATCTCTTGACTAAAATGTTTGTAA
TTCACTACTAAGCAGAATATACTAATAAGTTCTTATTGTTGTTTTGATTT
CTAGATGATAGTGCAATGACAAAATCTGTTGCTCATTCACTCCTCAAAAA
CAATGGGTTCAGTCGTACAGATATGGCAAGAAGATTTAGAGACGACTACA
TCAAAGAGCCATTTCGTGGATATGGTGGAGGTGTGGTTAGTATTTTTCAA
CAATGGAATACAAAAGAAATAACAGATGACAATGTTTATTTACCTTCTAA
GCATCAGTTCGATGGCTCAGGCTCATTTGGAAATGGAGCAGCAATGAGGG
TTGCACCAATACCTTTATTTGCAAAATCACCAGATCAATGTATTGAGGTA
CTAAACGAATATGAAAGTTAATTACACCAGCCAGTACTAACAGAGAGAAG
AGATTAGGTTCAAATTTGGTTTGTTAAAAATGTCTGTTGGTGCGTGACTT
CACACTTCACACAACCCAAGTAATTTCTTATCCAATCTCATTTCATGCAC
CTTTTGATAAGGGTTGATAGAATTGTTATTGGCCTAGAACGCCAAGAGGG
TTTCGAATACCAATTTTCTTTAGATACCAATTTTTTTTTTCAATATTTAA
AACTTTTTTTCATTGTCAGAAATCTAAAAGCCACGCCATAGCTATAGGCC
TTTGTCTGTACACAGACCCAGTATCTACAGCTAATTTTAAAATTCATTGC
CGTAGAGGGTCTGTTGTCATTGTCTTTTCTCATTTGAGATTTTTCAAACC
GACTGCTGTGATGGAGTGTTGGTGAGAAAGGGGAGGTGATAAGAGAAGTG
TTGCTATTTATGAATCATACTTCCATCGCAGAGGTCTCAGTACGGGAATT
TTTTTTATCAAACAGACAATGTGCACAGAGTGTACTACAAAGTGATAAAC
GTGAGATACACTCTGGTACAGAGTACATAAGCCTATGCACAGTACATAAA
CATCAGAAGAAACAATAAACATCTCTCATTTCCAAAGAAGAGTATTCTTT
CTTCAGATACAGGAATTTGTTGATAATTTGGTATCAATCCTTCTTTTTGT
TTCACTGTCTATTTAGATTGCACAACGGGCAGCACAGTTAACACATTATA
ACAAACATGGTATCAACGGAGCTATTCTTCAAGCACTTGCCATTTTCCAC
GCTCTCCAATCAAAAAAGGATAACTTCAAAGTTGATGAATTTCTTACATA
CCTGAAAAAGCAAATGAAGACTATTGAAAAAGCTTCAAAAGTAAAAATAG
GACATCACAAAAATGAGTAAGTCAAATTTTTTGAATAATTTTATTGGTGA
TATTCCTGTTAATCTTCATTTTCTACTCTGGAGTAGAAAAATCAGGAGCC
TTCTGCCTGAGCTGAGGATATTAACAATTTTTGTTTTCTATATAGGCTGT
CAAAAACATTATGATGGTTTAATAAAAGATGGGCTATCAAAAATGGGTCA
TTTGACAGTCAAAAGGGATCATGGGTAATCAGGACCACCACGCCCTCATA
AACGGCTTCCTGCTGGTCTAAAAATTCCTCATTGTCCATACACCCCTACC
TCATAGCCCTGGTGGATCTTTTTCCCACGGTGGGGATGAAAATTGTTAGG
GAAATCCCAATGGGGAAATTCTATTGTTTCAGGGTCAAAAAATCCTGGTT
GGGATGGATTTGGAGTGCAATTTCAAATGGGGATAAAAACAATAGGGCTG
AAATTTTGGGGTTTTTCTCCCAGCGGGGACAAAATTTTGGCCAAATCTGG
CAGTGGGTTGGGGGTGTCCCAGTCCCATCCAGTCTGTGACATGGTTCATT
TCAATCATGAAACCAATAGTATGAACTTTTTATTAACTTCATAGAAATGA
AAATATAGAAGAATATGCCAAGTCAGAAAACTTTTCATACTGCAGTCAAC
TTGAAGTTATTGAAAAACTTATCTCAAATGAAAACACTGATTTAAAAACT
GTTATAGAACAAATTGGACATGATATTTCAGCCATGACAGCTGTACCTGC
TGCAATAATATCGTTTTTGAAAAATATTGACAATGGTTTTGAAGAGGTTT
TATATTACGCAATATCACTTGGAGGTGATACTGATACTATTGCCAGTATG
GCGTGTGCAATCGCTGGAGCTTTTTATGGTGCACAAGATATTCCCAAACT
ATGGATTGAAAAATGTGAAGATTCAGATATTTTAGTTGACATGGGTGAGA
AATTGTACCAAGTACATTCTTAATTGCGATAATTGATTA

Coding sequence (CDS) from alignment at sc0000083_pilon:647919..653207-

>MSTRG.11475.2.p1 ID=MSTRG.11475.2.p1|Name=MSTRG.11475.2.p1|organism=Clytia hemisphaerica_ch_hm2_pilon|type=CDS|length=2583bp|location=Sequence derived from alignment at sc0000083_pilon:647919..653207- (Clytia hemisphaerica_ch_hm2_pilon)
AAATGAAAATATAGAAGAATATGCCAAGTCAGAAAACTTTTCATACTGCA
GTCAACTTGAAGTTATTGAAAAACTTATCTCAAATGAAAACACTGATTTA
AAAACTGTTATAGAACAAATTGGACATGATATTTCAGCCATGACAGCTGT
ACCTGCTGCAATAATATCGTTTTTGAAAAATATTGACAATGGTTTTGAAG
AGGTTTTATATTACGCAATATCACTTGGAGGTGATACTGATACTATTGCC
AGTATGGCGTGTGCAATCGCTGGAGCTTTTTATGGTGCACAAGATATTCC
CAAACTATGGATTGAAAAATGTGAAGATTCAGATATTTTAGTTGACATGG
GTGAGAAATTGTACCAAGTACATTCTTAAATTGCACAACGGGCAGCACAG
TTAACACATTATAACAAACATGGTATCAACGGAGCTATTCTTCAAGCACT
TGCCATTTTCCACGCTCTCCAATCAAAAAAGGATAACTTCAAAGTTGATG
AATTTCTTACATACCTGAAAAAGCAAATGAAGACTATTGAAAAAGCTTCA
AAAGTAAAAATAGGACATCACAAAAATGAATGACAAAATCTGTTGCTCAT
TCACTCCTCAAAAACAATGGGTTCAGTCGTACAGATATGGCAAGAAGATT
TAGAGACGACTACATCAAAGAGCCATTTCGTGGATATGGTGGAGGTGTGG
TTAGTATTTTTCAACAATGGAATACAAAAGAAATAACAGATGACAATGTT
TATTTACCTTCTAAGCATCAGTTCGATGGCTCAGGCTCATTTGGAAATGG
AGCAGCAATGAGGGTTGCACCAATACCTTTATTTGCAAAATCACCAGATC
AATGTATTGAGAAATGAAAATATAGAAGAATATGCCAAGTCAGAAAACTT
TTCATACTGCAGTCAACTTGAAGTTATTGAAAAACTTATCTCAAATGAAA
ACACTGATTTAAAAACTGTTATAGAACAAATTGGACATGATATTTCAGCC
ATGACAGCTGTACCTGCTGCAATAATATCGTTTTTGAAAAATATTGACAA
TGGTTTTGAAGAGGTTTTATATTACGCAATATCACTTGGAGGTGATACTG
ATACTATTGCCAGTATGGCGTGTGCAATCGCTGGAGCTTTTTATGGTGCA
CAAGATATTCCCAAACTATGGATTGAAAAATGTGAAGATTCAGATATTTT
AGTTGACATGGGTGAGAAATTGTACCAAGTACATTCTTAAATTGCACAAC
GGGCAGCACAGTTAACACATTATAACAAACATGGTATCAACGGAGCTATT
CTTCAAGCACTTGCCATTTTCCACGCTCTCCAATCAAAAAAGGATAACTT
CAAAGTTGATGAATTTCTTACATACCTGAAAAAGCAAATGAAGACTATTG
AAAAAGCTTCAAAAGTAAAAATAGGACATCACAAAAATGAATGACAAAAT
CTGTTGCTCATTCACTCCTCAAAAACAATGGGTTCAGTCGTACAGATATG
GCAAGAAGATTTAGAGACGACTACATCAAAGAGCCATTTCGTGGATATGG
TGGAGGTGTGGTTAGTATTTTTCAACAATGGAATACAAAAGAAATAACAG
ATGACAATGTTTATTTACCTTCTAAGCATCAGTTCGATGGCTCAGGCTCA
TTTGGAAATGGAGCAGCAATGAGGGTTGCACCAATACCTTTATTTGCAAA
ATCACCAGATCAATGTATTGAGAAATGAAAATATAGAAGAATATGCCAAG
TCAGAAAACTTTTCATACTGCAGTCAACTTGAAGTTATTGAAAAACTTAT
CTCAAATGAAAACACTGATTTAAAAACTGTTATAGAACAAATTGGACATG
ATATTTCAGCCATGACAGCTGTACCTGCTGCAATAATATCGTTTTTGAAA
AATATTGACAATGGTTTTGAAGAGGTTTTATATTACGCAATATCACTTGG
AGGTGATACTGATACTATTGCCAGTATGGCGTGTGCAATCGCTGGAGCTT
TTTATGGTGCACAAGATATTCCCAAACTATGGATTGAAAAATGTGAAGAT
TCAGATATTTTAGTTGACATGGGTGAGAAATTGTACCAAGTACATTCTTA
AATTGCACAACGGGCAGCACAGTTAACACATTATAACAAACATGGTATCA
ACGGAGCTATTCTTCAAGCACTTGCCATTTTCCACGCTCTCCAATCAAAA
AAGGATAACTTCAAAGTTGATGAATTTCTTACATACCTGAAAAAGCAAAT
GAAGACTATTGAAAAAGCTTCAAAAGTAAAAATAGGACATCACAAAAATG
AATGACAAAATCTGTTGCTCATTCACTCCTCAAAAACAATGGGTTCAGTC
GTACAGATATGGCAAGAAGATTTAGAGACGACTACATCAAAGAGCCATTT
CGTGGATATGGTGGAGGTGTGGTTAGTATTTTTCAACAATGGAATACAAA
AGAAATAACAGATGACAATGTTTATTTACCTTCTAAGCATCAGTTCGATG
GCTCAGGCTCATTTGGAAATGGAGCAGCAATGAGGGTTGCACCAATACCT
TTATTTGCAAAATCACCAGATCAATGTATTGAG
Gene-mRNA-Prot
This mRNA is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
MSTRG.11475MSTRG.11475Clytia hemisphaerica_ch_hm2_pilongene
The following polypeptide feature(s) derives from this mRNA:
Feature NameUnique NameSpeciesType
MSTRG.11475.2.p1MSTRG.11475.2.p1-proteinClytia hemisphaerica_ch_hm2_pilonpolypeptide
The following exon feature(s) are a part of this mRNA:
Feature NameUnique NameSpeciesType
MSTRG.11475.2.p1.exon4MSTRG.11475.2.p1.exon4Clytia hemisphaerica_ch_hm2_pilonexon
MSTRG.11475.2.p1.exon3MSTRG.11475.2.p1.exon3Clytia hemisphaerica_ch_hm2_pilonexon
MSTRG.11475.2.p1.exon2MSTRG.11475.2.p1.exon2Clytia hemisphaerica_ch_hm2_pilonexon
MSTRG.11475.2.p1.exon1MSTRG.11475.2.p1.exon1Clytia hemisphaerica_ch_hm2_pilonexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0000083_pilongenomesc0000083_pilon:647919..653207 -