MSTRG.11475.1.p1 (mRNA) -

Overview
NameMSTRG.11475.1.p1
Unique NameMSTRG.11475.1.p1
TypemRNA
OrganismClytia hemisphaerica_ch_hm2_pilon (Jellyfish)

Sequence
The following sequences are available for this feature:

mRNA from alignment at sc0000083_pilon:647376..650976-

Legend: exonfive_prime_UTRpolypeptideCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>MSTRG.11475.1.p1 ID=MSTRG.11475.1.p1|Name=MSTRG.11475.1.p1|organism=Clytia hemisphaerica_ch_hm2_pilon|type=mRNA|length=3601bp|location=Sequence derived from alignment at sc0000083_pilon:647376..650976- (Clytia hemisphaerica_ch_hm2_pilon)
GGGACCCCTACCCCCTGATCAAGCTGTAAAGGGGGGAATGGGTCTATGAT
GGTTTATGCCATCAAGAATTGTAAAAAAGAGAGAAATCTCACTTACAATG
GAAGCTCCCTTAAAGTGTCCCAGCGTCTTAAAATATACTTCAAAAGGAGA
CATCCACCCCTTTTGTCATTCTTTTTCTATCATTCATGCAGGAATATGCC
CTATTCCCATCCCTCCCTGACTCATTTCTGGCTAAATCCTAAGGTCACAG
CTCAAATTCACATGTTTTTGTGTGCAAAGAAAAGAAGAACTTTAGTGAAT
CAAACAAAGGTGTAAGAATTTTTGGCAATTAGAAAGGTGGGAGAGATGGT
CAGAGAGAGAGTCTTATAAAAAAGGTTGTCTTTTTGTTGACAGCCCCTTA
GTTTTGTTATTAAGTTCACAGTTTCTGTACGCCAATAGTTATCACACAAA
TTTGAATCAATTTTCACACAGGTACTAATTCTCAAATAATATGTCAATAA
CCAAATATCAAGGATGTTTGTTAGGAGCCTTGATAGGTGATTGCATGGGG
GCACCTTTTGAAATGAGCTATTTTGGTCGAAATGGAATAAAAAGAGAAAT
CATATTGAATAAGCTGTCAAAGACCCTTGAGAAGAAAGAAAGCACTTTTG
GATATACAGGTTATCTTAAAAGTTGTTGTTTTTCCTTATTTTCTAGGTTT
TTGTATATATATACCAAGTTGTATGGATTTTTTTTATAACCAATTTTCAA
TGAAATTGCTTTTTTCTTGTTAGTATATTTACCAAATCTTTTAAAATCTC
TTGACTAAAATGTTTGTAATTCACTACTAAGCAGAATATACTAATAAGTT
CTTATTGTTGTTTTGATTTCTAGATGATAGTGCAATGACAAAATCTGTTG
CTCATTCACTCCTCAAAAACAATGGGTTCAGTCGTACAGATATGGCAAGA
AGATTTAGAGACGACTACATCAAAGAGCCATTTCGTGGATATGGTGGAGG
TGTGGTTAGTATTTTTCAACAATGGAATACAAAAGAAATAACAGATGACA
ATGTTTATTTACCTTCTAAGCATCAGTTCGATGGCTCAGGCTCATTTGGA
AATGGAGCAGCAATGAGGGTTGCACCAATACCTTTATTTGCAAAATCACC
AGATCAATGTATTGAGGTACTAAACGAATATGAAAGTTAATTACACCAGC
CAGTACTAACAGAGAGAAGAGATTAGGTTCAAATTTGGTTTGTTAAAAAT
GTCTGTTGGTGCGTGACTTCACACTTCACACAACCCAAGTAATTTCTTAT
CCAATCTCATTTCATGCACCTTTTGATAAGGGTTGATAGAATTGTTATTG
GCCTAGAACGCCAAGAGGGTTTCGAATACCAATTTTCTTTAGATACCAAT
TTTTTTTTTCAATATTTAAAACTTTTTTTCATTGTCAGAAATCTAAAAGC
CACGCCATAGCTATAGGCCTTTGTCTGTACACAGACCCAGTATCTACAGC
TAATTTTAAAATTCATTGCCGTAGAGGGTCTGTTGTCATTGTCTTTTCTC
ATTTGAGATTTTTCAAACCGACTGCTGTGATGGAGTGTTGGTGAGAAAGG
GGAGGTGATAAGAGAAGTGTTGCTATTTATGAATCATACTTCCATCGCAG
AGGTCTCAGTACGGGAATTTTTTTTATCAAACAGACAATGTGCACAGAGT
GTACTACAAAGTGATAAACGTGAGATACACTCTGGTACAGAGTACATAAG
CCTATGCACAGTACATAAACATCAGAAGAAACAATAAACATCTCTCATTT
CCAAAGAAGAGTATTCTTTCTTCAGATACAGGAATTTGTTGATAATTTGG
TATCAATCCTTCTTTTTGTTTCACTGTCTATTTAGATTGCACAACGGGCA
GCACAGTTAACACATTATAACAAACATGGTATCAACGGAGCTATTCTTCA
AGCACTTGCCATTTTCCACGCTCTCCAATCAAAAAAGGATAACTTCAAAG
TTGATGAATTTCTTACATACCTGAAAAAGCAAATGAAGACTATTGAAAAA
GCTTCAAAAGTAAAAATAGGACATCACAAAAATGAGTAAGTCAAATTTTT
TGAATAATTTTATTGGTGATATTCCTGTTAATCTTCATTTTCTACTCTGG
AGTAGAAAAATCAGGAGCCTTCTGCCTGAGCTGAGGATATTAACAATTTT
TGTTTTCTATATAGGCTGTCAAAAACATTATGATGGTTTAATAAAAGATG
GGCTATCAAAAATGGGTCATTTGACAGTCAAAAGGGATCATGGGTAATCA
GGACCACCACGCCCTCATAAACGGCTTCCTGCTGGTCTAAAAATTCCTCA
TTGTCCATACACCCCTACCTCATAGCCCTGGTGGATCTTTTTCCCACGGT
GGGGATGAAAATTGTTAGGGAAATCCCAATGGGGAAATTCTATTGTTTCA
GGGTCAAAAAATCCTGGTTGGGATGGATTTGGAGTGCAATTTCAAATGGG
GATAAAAACAATAGGGCTGAAATTTTGGGGTTTTTCTCCCAGCGGGGACA
AAATTTTGGCCAAATCTGGCAGTGGGTTGGGGGTGTCCCAGTCCCATCCA
GTCTGTGACATGGTTCATTTCAATCATGAAACCAATAGTATGAACTTTTT
ATTAACTTCATAGAAATGAAAATATAGAAGAATATGCCAAGTCAGAAAAC
TTTTCATACTGCAGTCAACTTGAAGTTATTGAAAAACTTATCTCAAATGA
AAACACTGATTTAAAAACTGTTATAGAACAAATTGGACATGATATTTCAG
CCATGACAGCTGTACCTGCTGCAATAATATCGTTTTTGAAAAATATTGAC
AATGGTTTTGAAGAGGTTTTATATTACGCAATATCACTTGGAGGTGATAC
TGATACTATTGCCAGTATGGCGTGTGCAATCGCTGGAGCTTTTTATGGTG
CACAAGATATTCCCAAACTATGGATTGAAAAATGTGAAGATTCAGATATT
TTAGTTGACATGGGTGAGAAATTGTACCAAGTACATTCTTAATTGCGATA
ATTGATTATGAAAATGTTTCATAACCCATTAAAATCCATAAGTATGCACG
TTTATTAAATATCACTTTTATCTTAAAGTTATATTCCCATTATGATTGAA
AAAATTGAATTCAAAATAGTTCTTTTTTCTAATCCTTGAAAAAACAACTT
CATAAGGTGTCCATGTGGGGTTGAAAATGTTGGCACCTGCGGCGGGTATT
TTACCACCAACAACGACAGTTACTCTGAAGGCCAAAACTCGATTCCCAAG
TCAATAAACGGCCAGTGCCTAGAGTGCTTGGAATTTTTATTGTTGATAAA
AAATTATATTTTTAAATTAAATTGATACTACTATTTAATTGGGTTCTTTA
TGAATTTACTAAATATAGAAAATATTTATGATATTCTGAGGGTAAGGAAA
TTATGCCTATAGAATCACACAGTTTTCATACATTTTAGATTTTGTACCAT
AAATAGATTGTATTATTTTGGAAAGTCATCACAAAATAGTTTTGTATTTT
TATTACTTTTATCACGAGTAAAATCAATACATTTTGTTTATAATTTTCTT
C

Coding sequence (CDS) from alignment at sc0000083_pilon:647376..650976-

>MSTRG.11475.1.p1 ID=MSTRG.11475.1.p1|Name=MSTRG.11475.1.p1|organism=Clytia hemisphaerica_ch_hm2_pilon|type=CDS|length=4164bp|location=Sequence derived from alignment at sc0000083_pilon:647376..650976- (Clytia hemisphaerica_ch_hm2_pilon)
AAATGAAAATATAGAAGAATATGCCAAGTCAGAAAACTTTTCATACTGCA
GTCAACTTGAAGTTATTGAAAAACTTATCTCAAATGAAAACACTGATTTA
AAAACTGTTATAGAACAAATTGGACATGATATTTCAGCCATGACAGCTGT
ACCTGCTGCAATAATATCGTTTTTGAAAAATATTGACAATGGTTTTGAAG
AGGTTTTATATTACGCAATATCACTTGGAGGTGATACTGATACTATTGCC
AGTATGGCGTGTGCAATCGCTGGAGCTTTTTATGGTGCACAAGATATTCC
CAAACTATGGATTGAAAAATGTGAAGATTCAGATATTTTAGTTGACATGG
GTGAGAAATTGTACCAAGTACATTCTTAAATTGCACAACGGGCAGCACAG
TTAACACATTATAACAAACATGGTATCAACGGAGCTATTCTTCAAGCACT
TGCCATTTTCCACGCTCTCCAATCAAAAAAGGATAACTTCAAAGTTGATG
AATTTCTTACATACCTGAAAAAGCAAATGAAGACTATTGAAAAAGCTTCA
AAAGTAAAAATAGGACATCACAAAAATGAATGATAGTGCAATGACAAAAT
CTGTTGCTCATTCACTCCTCAAAAACAATGGGTTCAGTCGTACAGATATG
GCAAGAAGATTTAGAGACGACTACATCAAAGAGCCATTTCGTGGATATGG
TGGAGGTGTGGTTAGTATTTTTCAACAATGGAATACAAAAGAAATAACAG
ATGACAATGTTTATTTACCTTCTAAGCATCAGTTCGATGGCTCAGGCTCA
TTTGGAAATGGAGCAGCAATGAGGGTTGCACCAATACCTTTATTTGCAAA
ATCACCAGATCAATGTATTGAGATGTCAATAACCAAATATCAAGGATGTT
TGTTAGGAGCCTTGATAGGTGATTGCATGGGGGCACCTTTTGAAATGAGC
TATTTTGGTCGAAATGGAATAAAAAGAGAAATCATATTGAATAAGCTGTC
AAAGACCCTTGAGAAGAAAGAAAGCACTTTTGGATATACAGAAATGAAAA
TATAGAAGAATATGCCAAGTCAGAAAACTTTTCATACTGCAGTCAACTTG
AAGTTATTGAAAAACTTATCTCAAATGAAAACACTGATTTAAAAACTGTT
ATAGAACAAATTGGACATGATATTTCAGCCATGACAGCTGTACCTGCTGC
AATAATATCGTTTTTGAAAAATATTGACAATGGTTTTGAAGAGGTTTTAT
ATTACGCAATATCACTTGGAGGTGATACTGATACTATTGCCAGTATGGCG
TGTGCAATCGCTGGAGCTTTTTATGGTGCACAAGATATTCCCAAACTATG
GATTGAAAAATGTGAAGATTCAGATATTTTAGTTGACATGGGTGAGAAAT
TGTACCAAGTACATTCTTAAATTGCACAACGGGCAGCACAGTTAACACAT
TATAACAAACATGGTATCAACGGAGCTATTCTTCAAGCACTTGCCATTTT
CCACGCTCTCCAATCAAAAAAGGATAACTTCAAAGTTGATGAATTTCTTA
CATACCTGAAAAAGCAAATGAAGACTATTGAAAAAGCTTCAAAAGTAAAA
ATAGGACATCACAAAAATGAATGATAGTGCAATGACAAAATCTGTTGCTC
ATTCACTCCTCAAAAACAATGGGTTCAGTCGTACAGATATGGCAAGAAGA
TTTAGAGACGACTACATCAAAGAGCCATTTCGTGGATATGGTGGAGGTGT
GGTTAGTATTTTTCAACAATGGAATACAAAAGAAATAACAGATGACAATG
TTTATTTACCTTCTAAGCATCAGTTCGATGGCTCAGGCTCATTTGGAAAT
GGAGCAGCAATGAGGGTTGCACCAATACCTTTATTTGCAAAATCACCAGA
TCAATGTATTGAGATGTCAATAACCAAATATCAAGGATGTTTGTTAGGAG
CCTTGATAGGTGATTGCATGGGGGCACCTTTTGAAATGAGCTATTTTGGT
CGAAATGGAATAAAAAGAGAAATCATATTGAATAAGCTGTCAAAGACCCT
TGAGAAGAAAGAAAGCACTTTTGGATATACAGAAATGAAAATATAGAAGA
ATATGCCAAGTCAGAAAACTTTTCATACTGCAGTCAACTTGAAGTTATTG
AAAAACTTATCTCAAATGAAAACACTGATTTAAAAACTGTTATAGAACAA
ATTGGACATGATATTTCAGCCATGACAGCTGTACCTGCTGCAATAATATC
GTTTTTGAAAAATATTGACAATGGTTTTGAAGAGGTTTTATATTACGCAA
TATCACTTGGAGGTGATACTGATACTATTGCCAGTATGGCGTGTGCAATC
GCTGGAGCTTTTTATGGTGCACAAGATATTCCCAAACTATGGATTGAAAA
ATGTGAAGATTCAGATATTTTAGTTGACATGGGTGAGAAATTGTACCAAG
TACATTCTTAAATTGCACAACGGGCAGCACAGTTAACACATTATAACAAA
CATGGTATCAACGGAGCTATTCTTCAAGCACTTGCCATTTTCCACGCTCT
CCAATCAAAAAAGGATAACTTCAAAGTTGATGAATTTCTTACATACCTGA
AAAAGCAAATGAAGACTATTGAAAAAGCTTCAAAAGTAAAAATAGGACAT
CACAAAAATGAATGATAGTGCAATGACAAAATCTGTTGCTCATTCACTCC
TCAAAAACAATGGGTTCAGTCGTACAGATATGGCAAGAAGATTTAGAGAC
GACTACATCAAAGAGCCATTTCGTGGATATGGTGGAGGTGTGGTTAGTAT
TTTTCAACAATGGAATACAAAAGAAATAACAGATGACAATGTTTATTTAC
CTTCTAAGCATCAGTTCGATGGCTCAGGCTCATTTGGAAATGGAGCAGCA
ATGAGGGTTGCACCAATACCTTTATTTGCAAAATCACCAGATCAATGTAT
TGAGATGTCAATAACCAAATATCAAGGATGTTTGTTAGGAGCCTTGATAG
GTGATTGCATGGGGGCACCTTTTGAAATGAGCTATTTTGGTCGAAATGGA
ATAAAAAGAGAAATCATATTGAATAAGCTGTCAAAGACCCTTGAGAAGAA
AGAAAGCACTTTTGGATATACAGAAATGAAAATATAGAAGAATATGCCAA
GTCAGAAAACTTTTCATACTGCAGTCAACTTGAAGTTATTGAAAAACTTA
TCTCAAATGAAAACACTGATTTAAAAACTGTTATAGAACAAATTGGACAT
GATATTTCAGCCATGACAGCTGTACCTGCTGCAATAATATCGTTTTTGAA
AAATATTGACAATGGTTTTGAAGAGGTTTTATATTACGCAATATCACTTG
GAGGTGATACTGATACTATTGCCAGTATGGCGTGTGCAATCGCTGGAGCT
TTTTATGGTGCACAAGATATTCCCAAACTATGGATTGAAAAATGTGAAGA
TTCAGATATTTTAGTTGACATGGGTGAGAAATTGTACCAAGTACATTCTT
AAATTGCACAACGGGCAGCACAGTTAACACATTATAACAAACATGGTATC
AACGGAGCTATTCTTCAAGCACTTGCCATTTTCCACGCTCTCCAATCAAA
AAAGGATAACTTCAAAGTTGATGAATTTCTTACATACCTGAAAAAGCAAA
TGAAGACTATTGAAAAAGCTTCAAAAGTAAAAATAGGACATCACAAAAAT
GAATGATAGTGCAATGACAAAATCTGTTGCTCATTCACTCCTCAAAAACA
ATGGGTTCAGTCGTACAGATATGGCAAGAAGATTTAGAGACGACTACATC
AAAGAGCCATTTCGTGGATATGGTGGAGGTGTGGTTAGTATTTTTCAACA
ATGGAATACAAAAGAAATAACAGATGACAATGTTTATTTACCTTCTAAGC
ATCAGTTCGATGGCTCAGGCTCATTTGGAAATGGAGCAGCAATGAGGGTT
GCACCAATACCTTTATTTGCAAAATCACCAGATCAATGTATTGAGATGTC
AATAACCAAATATCAAGGATGTTTGTTAGGAGCCTTGATAGGTGATTGCA
TGGGGGCACCTTTTGAAATGAGCTATTTTGGTCGAAATGGAATAAAAAGA
GAAATCATATTGAATAAGCTGTCAAAGACCCTTGAGAAGAAAGAAAGCAC
TTTTGGATATACAG
Gene-mRNA-Prot
This mRNA is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
MSTRG.11475MSTRG.11475Clytia hemisphaerica_ch_hm2_pilongene
The following polypeptide feature(s) derives from this mRNA:
Feature NameUnique NameSpeciesType
MSTRG.11475.1.p1MSTRG.11475.1.p1-proteinClytia hemisphaerica_ch_hm2_pilonpolypeptide
The following exon feature(s) are a part of this mRNA:
Feature NameUnique NameSpeciesType
MSTRG.11475.1.p1.exon4MSTRG.11475.1.p1.exon4Clytia hemisphaerica_ch_hm2_pilonexon
MSTRG.11475.1.p1.exon3MSTRG.11475.1.p1.exon3Clytia hemisphaerica_ch_hm2_pilonexon
MSTRG.11475.1.p1.exon2MSTRG.11475.1.p1.exon2Clytia hemisphaerica_ch_hm2_pilonexon
MSTRG.11475.1.p1.exon1MSTRG.11475.1.p1.exon1Clytia hemisphaerica_ch_hm2_pilonexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0000083_pilongenomesc0000083_pilon:647376..650976 -