MSTRG.11365.1.p1 (mRNA) -

Overview
NameMSTRG.11365.1.p1
Unique NameMSTRG.11365.1.p1
TypemRNA
OrganismClytia hemisphaerica_ch_hm2_pilon (Jellyfish)

Sequence
The following sequences are available for this feature:

mRNA from alignment at sc0000082_pilon:349990..353471-

Legend: exonpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>MSTRG.11365.1.p1 ID=MSTRG.11365.1.p1|Name=MSTRG.11365.1.p1|organism=Clytia hemisphaerica_ch_hm2_pilon|type=mRNA|length=3482bp|location=Sequence derived from alignment at sc0000082_pilon:349990..353471- (Clytia hemisphaerica_ch_hm2_pilon)
AAAGACCACACTGAATCAAAAACAGGGTAAGAATATGTTCATTTTATTTC
TATAATTAAATGCAAAAAAATATCAGCGTTTTGATTGGTCGAGAACATCG
AGATATTTGCGATATTTCATATTTCTTTAGTATGGAAACATGGCCGCGTT
GGGGTTGGGTTGGGTAAGCGACGGGAGAAAAAGAGTCCATGATCGGCAAA
GTAAAAGCCAAGATTTCCAAGAATAGATCCTCTAGGAGTACTCACAACTG
TCGCACTAGTCTGTCTCTATTCTGTGGTATTCCAGGTGACTTAACTTAAC
TTTCAACCGAATTCACTGAGCGGGAGTCAGCCTAGTCCTAAGCCTTTCCT
AATAAACACTTTTTTATAAGAGTTGTTTTTTTTCATTTCATCATGGATAT
TCTTAACTTTTTGGGGAAAATCATCCTAAATTATTCTTAAAATATTCTTA
GATTAGGATCAGTTCAACCAAAATTTAAAATGGAATACATACCTGTAGAA
AAAAAAATTGCAATATTCAAAACGTTTGAGCCTTACTGGGGATTACTTGA
CAAGTTACAGTTAAAAATGTTCGAACAGTGGCATTCTTAGGTTAAATTGC
CAAATTATATGACGGTGATATTCTTAGCATGTTCTTCATTTTGTGGTCAA
TTTCATTATAAATATTCTTATATACTAATCAAACCGACTATTTATATACT
TTATAGAGATGGGATCTTGTTGTTTACAAGAAGTTCTTGACTACGTCATT
GAAGAGATAGGTGAAGAAGATAAACAGCTTCTACTGTCAAGCCTAAATAT
TACAAAATCCAAGACACTAGAGAACTTGGAAGAAGTCATCAACAATGTCA
CATGGCCAAGGTTATCATACGAGTTGGAAAGATTGGGAAGAGTGGACATA
GTGAAGCATATCACCAAAAGGACCCTTATCACTTCAGGTATCACCGTCAT
TCACTCTTTATTAGCGATTTATCTTAAGAGAACTAATTATCGTAATCACA
AATAAAACCTCAAAAAATCACATTTCGCAGGAATTAATTAATCTTTTATT
TTCCTAAAACTTTTTCAGGTTTTTTGATGAAAAATGGCCAAATTTGTAAT
TCGCTGAAAACCACGAAAAAGCAAAAATTAGTTCGCGCGAAAATTAGTTC
CCTTATGGTATGTATGTATTTCTGCGATGGGGACGCTTAGCATCTGATTT
GTCTAGATCCTGATTGACTGAGGACGACGGTAAATGAGCATTTATTACCT
ACCTCCCTCGCTTTTACGGGTCAAACCTTAGGGTTATTTCTAATTGTTGC
AGTCGCTTCGTTGTCACTCGTTATTGTATTCAAGGTATATTGAAAACCTC
AATTATAATACTTTCGAGGAATTTGTTTCTAAAGCATACTTTGGTAAATG
ACACGAGGGTAATTAAGATGTTAATCAACGCATTATAAAGTTCATTAACG
ATATCATAAAAGGCCATGATAAATGTCTTTATTTTTATCAAATTTTCTCT
GTTCTTTCCCTCTTAGATATCCTAATTGCTTCATCAAAACTTCGCAGCCA
ATGTGCTGAAGACATAATCAGCTCCCTTGTGAACGAGCCGTTAATTGGAG
ATCGGAGTCAAGTCCATTACCAATACAATGAGAATCTATATACCGATTTG
GCAGTACTCAAAGCTACTGAAGTCGATAGAGAAACTAATAATTCTGATCG
CGAAGCGCTAATGGAGCAACGATTACTTCAGAAAGAGAGCATCGTAATGA
AGGATCTCTTTCAGAGTGACGATGAAGTTGTTTTCGTTCGCGCTGTGGGT
GGTATGGGGAAAACAACCATGTTAGAGATGTACACTCACAAATTGGCAAA
GCGAGAGCTCAACATTGATTTTCCTGTGGAATTTGTGTTTTTCTTCTCTT
GCCGGGAAATCAACTTGGTGTATAAGGATATAGAATCAGTAGAAGAGCTC
TTTAGATTCAAGTATCCGAACATTTTTAAAAGATTGACATTAACAGATTT
GGAACCGATTGCTGATAGAATATTGATTATAATCGACGGCCTCGATGAGC
TACAAGGTGTTTACGAATGTTCTAAAAAGACACACAAAAGGTCGACGTGT
ACCCCCTTTAAACTTGTTTTTGATTTAATCAATCCGAAAGGTCATGTCCT
GAAGGGTCATAAAAGTATTGCTTCAGGACGACCCAAAGCTTGTGACTTTT
TGAAGAGAAAATTTATCGAGCTTAAAGAATTGGAAATGAAAGTCATTAAA
ATTAAAACGGTAGAAGTTTGCGGTTTTAAGGACGAAGATGTCGAAAAATA
CATCGAACGTTTCTTTAACGGGGACGTTGCGAAAGTCAAAAGAGTGAAGG
ACGCTATTTGTTATTCGAACAATCTCAAAGTCATGGCAACCGTTCCTGTT
TTTACATGGGTCATATGTAATGTTTATGGCGAAGATCTAATAACAAAGCC
GTTGAACACGTGTACAGAACTCTACATGTATGCCTGTCTTGTTTTTCTGA
GAAAGCATTTGCAAGGCGTAAGCTCTAAAACGTATAGAACTTTAGCTGAA
ATGTTGGACGATGTTAACTTCATGGAATGTGTGTATTCCTTGATGACACT
TTCAGTGAAGACCTATATGAAAAACATAGTCTTGTTTACTGAAAAAGATA
TACGAAAGTTAAACTGTCCTATTCATCTTGAACAGTCCGGATTGATTGTT
AAATACGAACGTGGCGAGACAAAGCAGGCTGTCTACCAATACAAGCATCT
AGCTTTACAAGAGTTTATGACCGGTCTGTTTCTATGCGTCACCAGAGGAA
TAACACCTTACATGACCAATCGCGAGTTGACGGCTTGTGCTCCTGTCATC
TTCGGAATACATCGACTCAAAAAGGAGAACGACTTTTTTAACGACTTCTT
CATGCGGCTTACACATCTACACGCGAGTAAGTCGAAAATCTTCACACGCA
TCATCTTACAGCCTTACAGAAATTGGAAATTTGAAAATTACATTCTTAAC
AATTCTCTCGAGATACCCAATTGTATGCTGAATACTGATTCCGACTATCT
GGTCATCGACCCTTTCATGCCAGAATGTCAAGAATTTCTCACACTTTTCC
ACGAGGCTAAACTTAAGCTTGACTGCCCATATTCTATGGCTAAAGTGGCC
AATTGTATCCTTTACACTGTCGACTTAAGAAATGCAATCTTTTTTATTAA
ACATTTAAATCTAAAATTAAAAACACCCACATTTTTGATTGGTTCCGATT
CTCTTATCATTAATATGGAGAGGCCAGAATGCAGACAGTTTATCAAGATC
CTTCGCGAATCGAAAGTGACCTTGGAAAGCCCATACTCAACAGTTCGGTT
TCGCAATGACCTTGAATTGAATGGTCACGAAGTTGAGTTTCTTTTCTCAC
GTTTACATTTCAAATTAAACATCCCATTGAGTATGATCGAATCTGAATCA
TTGATCATTATTGACATGAAAAACCCAGAATG

Coding sequence (CDS) from alignment at sc0000082_pilon:349990..353471-

>MSTRG.11365.1.p1 ID=MSTRG.11365.1.p1|Name=MSTRG.11365.1.p1|organism=Clytia hemisphaerica_ch_hm2_pilon|type=CDS|length=6660bp|location=Sequence derived from alignment at sc0000082_pilon:349990..353471- (Clytia hemisphaerica_ch_hm2_pilon)
ATATCCTAATTGCTTCATCAAAACTTCGCAGCCAATGTGCTGAAGACATA
ATCAGCTCCCTTGTGAACGAGCCGTTAATTGGAGATCGGAGTCAAGTCCA
TTACCAATACAATGAGAATCTATATACCGATTTGGCAGTACTCAAAGCTA
CTGAAGTCGATAGAGAAACTAATAATTCTGATCGCGAAGCGCTAATGGAG
CAACGATTACTTCAGAAAGAGAGCATCGTAATGAAGGATCTCTTTCAGAG
TGACGATGAAGTTGTTTTCGTTCGCGCTGTGGGTGGTATGGGGAAAACAA
CCATGTTAGAGATGTACACTCACAAATTGGCAAAGCGAGAGCTCAACATT
GATTTTCCTGTGGAATTTGTGTTTTTCTTCTCTTGCCGGGAAATCAACTT
GGTGTATAAGGATATAGAATCAGTAGAAGAGCTCTTTAGATTCAAGTATC
CGAACATTTTTAAAAGATTGACATTAACAGATTTGGAACCGATTGCTGAT
AGAATATTGATTATAATCGACGGCCTCGATGAGCTACAAGGTGTTTACGA
ATGTTCTAAAAAGACACACAAAAGGTCGACGTGTACCCCCTTTAAACTTG
TTTTTGATTTAATCAATCCGAAAGGTCATGTCCTGAAGGGTCATAAAAGT
ATTGCTTCAGGACGACCCAAAGCTTGTGACTTTTTGAAGAGAAAATTTAT
CGAGCTTAAAGAATTGGAAATGAAAGTCATTAAAATTAAAACGGTAGAAG
TTTGCGGTTTTAAGGACGAAGATGTCGAAAAATACATCGAACGTTTCTTT
AACGGGGACGTTGCGAAAGTCAAAAGAGTGAAGGACGCTATTTGTTATTC
GAACAATCTCAAAGTCATGGCAACCGTTCCTGTTTTTACATGGGTCATAT
GTAATGTTTATGGCGAAGATCTAATAACAAAGCCGTTGAACACGTGTACA
GAACTCTACATGTATGCCTGTCTTGTTTTTCTGAGAAAGCATTTGCAAGG
CGTAAGCTCTAAAACGTATAGAACTTTAGCTGAAATGTTGGACGATGTTA
ACTTCATGGAATGTGTGTATTCCTTGATGACACTTTCAGTGAAGACCTAT
ATGAAAAACATAGTCTTGTTTACTGAAAAAGATATACGAAAGTTAAACTG
TCCTATTCATCTTGAACAGTCCGGATTGATTGTTAAATACGAACGTGGCG
AGACAAAGCAGGCTGTCTACCAATACAAGCATCTAGCTTTACAAGAGTTT
ATGACCGGTCTGTTTCTATGCGTCACCAGAGGAATAACACCTTACATGAC
CAATCGCGAGTTGACGGCTTGTGCTCCTGTCATCTTCGGAATACATCGAC
TCAAAAAGGAGAACGACTTTTTTAACGACTTCTTCATGCGGCTTACACAT
CTACACGCGAGTAAGTCGAAAATCTTCACACGCATCATCTTACAGCCTTA
CAGAAATTGGAAATTTGAAAATTACATTCTTAACAATTCTCTCGAGATAC
CCAATTGTATGCTGAATACTGATTCCGACTATCTGGTCATCGACCCTTTC
ATGCCAGAATGTCAAGAATTTCTCACACTTTTCCACGAGGCTAAACTTAA
GCTTGACTGCCCATATTCTATGGCTAAAGTGGCCAATTGTATCCTTTACA
CTGTCGACTTAAGAAATGCAATCTTTTTTATTAAACATTTAAATCTAAAA
TTAAAAACACCCACATTTTTGATTGGTTCCGATTCTCTTATCATTAATAT
GGAGAGGCCAGAATGCAGACAGTTTATCAAGATCCTTCGCGAATCGAAAG
TGACCTTGGAAAGCCCATACTCAACAGTTCGGTTTCGCAATGACCTTGAA
TTGAATGGTCACGAAGTTGAGTTTCTTTTCTCACGTTTACATTTCAAATT
AAACATCCCATTGAGTATGATCGAATCTGAATCATTGATCATTATTGACA
TGAAAAACCCAGAAAGATGGGATCTTGTTGTTTACAAGAAGTTCTTGACT
ACGTCATTGAAGAGATAGGTGAAGAAGATAAACAGCTTCTACTGTCAAGC
CTAAATATTACAAAATCCAAGACACTAGAGAACTTGGAAGAAGTCATCAA
CAATGTCACATGGCCAAGGTTATCATACGAGTTGGAAAGATTGGGAAGAG
TGGACATAGTGAAGCATATCACCAAAAGGACCCTTATCACTTCAGAAGAC
CACACTGAATCAAAAACAGGATATCCTAATTGCTTCATCAAAACTTCGCA
GCCAATGTGCTGAAGACATAATCAGCTCCCTTGTGAACGAGCCGTTAATT
GGAGATCGGAGTCAAGTCCATTACCAATACAATGAGAATCTATATACCGA
TTTGGCAGTACTCAAAGCTACTGAAGTCGATAGAGAAACTAATAATTCTG
ATCGCGAAGCGCTAATGGAGCAACGATTACTTCAGAAAGAGAGCATCGTA
ATGAAGGATCTCTTTCAGAGTGACGATGAAGTTGTTTTCGTTCGCGCTGT
GGGTGGTATGGGGAAAACAACCATGTTAGAGATGTACACTCACAAATTGG
CAAAGCGAGAGCTCAACATTGATTTTCCTGTGGAATTTGTGTTTTTCTTC
TCTTGCCGGGAAATCAACTTGGTGTATAAGGATATAGAATCAGTAGAAGA
GCTCTTTAGATTCAAGTATCCGAACATTTTTAAAAGATTGACATTAACAG
ATTTGGAACCGATTGCTGATAGAATATTGATTATAATCGACGGCCTCGAT
GAGCTACAAGGTGTTTACGAATGTTCTAAAAAGACACACAAAAGGTCGAC
GTGTACCCCCTTTAAACTTGTTTTTGATTTAATCAATCCGAAAGGTCATG
TCCTGAAGGGTCATAAAAGTATTGCTTCAGGACGACCCAAAGCTTGTGAC
TTTTTGAAGAGAAAATTTATCGAGCTTAAAGAATTGGAAATGAAAGTCAT
TAAAATTAAAACGGTAGAAGTTTGCGGTTTTAAGGACGAAGATGTCGAAA
AATACATCGAACGTTTCTTTAACGGGGACGTTGCGAAAGTCAAAAGAGTG
AAGGACGCTATTTGTTATTCGAACAATCTCAAAGTCATGGCAACCGTTCC
TGTTTTTACATGGGTCATATGTAATGTTTATGGCGAAGATCTAATAACAA
AGCCGTTGAACACGTGTACAGAACTCTACATGTATGCCTGTCTTGTTTTT
CTGAGAAAGCATTTGCAAGGCGTAAGCTCTAAAACGTATAGAACTTTAGC
TGAAATGTTGGACGATGTTAACTTCATGGAATGTGTGTATTCCTTGATGA
CACTTTCAGTGAAGACCTATATGAAAAACATAGTCTTGTTTACTGAAAAA
GATATACGAAAGTTAAACTGTCCTATTCATCTTGAACAGTCCGGATTGAT
TGTTAAATACGAACGTGGCGAGACAAAGCAGGCTGTCTACCAATACAAGC
ATCTAGCTTTACAAGAGTTTATGACCGGTCTGTTTCTATGCGTCACCAGA
GGAATAACACCTTACATGACCAATCGCGAGTTGACGGCTTGTGCTCCTGT
CATCTTCGGAATACATCGACTCAAAAAGGAGAACGACTTTTTTAACGACT
TCTTCATGCGGCTTACACATCTACACGCGAGTAAGTCGAAAATCTTCACA
CGCATCATCTTACAGCCTTACAGAAATTGGAAATTTGAAAATTACATTCT
TAACAATTCTCTCGAGATACCCAATTGTATGCTGAATACTGATTCCGACT
ATCTGGTCATCGACCCTTTCATGCCAGAATGTCAAGAATTTCTCACACTT
TTCCACGAGGCTAAACTTAAGCTTGACTGCCCATATTCTATGGCTAAAGT
GGCCAATTGTATCCTTTACACTGTCGACTTAAGAAATGCAATCTTTTTTA
TTAAACATTTAAATCTAAAATTAAAAACACCCACATTTTTGATTGGTTCC
GATTCTCTTATCATTAATATGGAGAGGCCAGAATGCAGACAGTTTATCAA
GATCCTTCGCGAATCGAAAGTGACCTTGGAAAGCCCATACTCAACAGTTC
GGTTTCGCAATGACCTTGAATTGAATGGTCACGAAGTTGAGTTTCTTTTC
TCACGTTTACATTTCAAATTAAACATCCCATTGAGTATGATCGAATCTGA
ATCATTGATCATTATTGACATGAAAAACCCAGAAAGATGGGATCTTGTTG
TTTACAAGAAGTTCTTGACTACGTCATTGAAGAGATAGGTGAAGAAGATA
AACAGCTTCTACTGTCAAGCCTAAATATTACAAAATCCAAGACACTAGAG
AACTTGGAAGAAGTCATCAACAATGTCACATGGCCAAGGTTATCATACGA
GTTGGAAAGATTGGGAAGAGTGGACATAGTGAAGCATATCACCAAAAGGA
CCCTTATCACTTCAGAAGACCACACTGAATCAAAAACAGGATATCCTAAT
TGCTTCATCAAAACTTCGCAGCCAATGTGCTGAAGACATAATCAGCTCCC
TTGTGAACGAGCCGTTAATTGGAGATCGGAGTCAAGTCCATTACCAATAC
AATGAGAATCTATATACCGATTTGGCAGTACTCAAAGCTACTGAAGTCGA
TAGAGAAACTAATAATTCTGATCGCGAAGCGCTAATGGAGCAACGATTAC
TTCAGAAAGAGAGCATCGTAATGAAGGATCTCTTTCAGAGTGACGATGAA
GTTGTTTTCGTTCGCGCTGTGGGTGGTATGGGGAAAACAACCATGTTAGA
GATGTACACTCACAAATTGGCAAAGCGAGAGCTCAACATTGATTTTCCTG
TGGAATTTGTGTTTTTCTTCTCTTGCCGGGAAATCAACTTGGTGTATAAG
GATATAGAATCAGTAGAAGAGCTCTTTAGATTCAAGTATCCGAACATTTT
TAAAAGATTGACATTAACAGATTTGGAACCGATTGCTGATAGAATATTGA
TTATAATCGACGGCCTCGATGAGCTACAAGGTGTTTACGAATGTTCTAAA
AAGACACACAAAAGGTCGACGTGTACCCCCTTTAAACTTGTTTTTGATTT
AATCAATCCGAAAGGTCATGTCCTGAAGGGTCATAAAAGTATTGCTTCAG
GACGACCCAAAGCTTGTGACTTTTTGAAGAGAAAATTTATCGAGCTTAAA
GAATTGGAAATGAAAGTCATTAAAATTAAAACGGTAGAAGTTTGCGGTTT
TAAGGACGAAGATGTCGAAAAATACATCGAACGTTTCTTTAACGGGGACG
TTGCGAAAGTCAAAAGAGTGAAGGACGCTATTTGTTATTCGAACAATCTC
AAAGTCATGGCAACCGTTCCTGTTTTTACATGGGTCATATGTAATGTTTA
TGGCGAAGATCTAATAACAAAGCCGTTGAACACGTGTACAGAACTCTACA
TGTATGCCTGTCTTGTTTTTCTGAGAAAGCATTTGCAAGGCGTAAGCTCT
AAAACGTATAGAACTTTAGCTGAAATGTTGGACGATGTTAACTTCATGGA
ATGTGTGTATTCCTTGATGACACTTTCAGTGAAGACCTATATGAAAAACA
TAGTCTTGTTTACTGAAAAAGATATACGAAAGTTAAACTGTCCTATTCAT
CTTGAACAGTCCGGATTGATTGTTAAATACGAACGTGGCGAGACAAAGCA
GGCTGTCTACCAATACAAGCATCTAGCTTTACAAGAGTTTATGACCGGTC
TGTTTCTATGCGTCACCAGAGGAATAACACCTTACATGACCAATCGCGAG
TTGACGGCTTGTGCTCCTGTCATCTTCGGAATACATCGACTCAAAAAGGA
GAACGACTTTTTTAACGACTTCTTCATGCGGCTTACACATCTACACGCGA
GTAAGTCGAAAATCTTCACACGCATCATCTTACAGCCTTACAGAAATTGG
AAATTTGAAAATTACATTCTTAACAATTCTCTCGAGATACCCAATTGTAT
GCTGAATACTGATTCCGACTATCTGGTCATCGACCCTTTCATGCCAGAAT
GTCAAGAATTTCTCACACTTTTCCACGAGGCTAAACTTAAGCTTGACTGC
CCATATTCTATGGCTAAAGTGGCCAATTGTATCCTTTACACTGTCGACTT
AAGAAATGCAATCTTTTTTATTAAACATTTAAATCTAAAATTAAAAACAC
CCACATTTTTGATTGGTTCCGATTCTCTTATCATTAATATGGAGAGGCCA
GAATGCAGACAGTTTATCAAGATCCTTCGCGAATCGAAAGTGACCTTGGA
AAGCCCATACTCAACAGTTCGGTTTCGCAATGACCTTGAATTGAATGGTC
ACGAAGTTGAGTTTCTTTTCTCACGTTTACATTTCAAATTAAACATCCCA
TTGAGTATGATCGAATCTGAATCATTGATCATTATTGACATGAAAAACCC
AGAAAGATGGGATCTTGTTGTTTACAAGAAGTTCTTGACTACGTCATTGA
AGAGATAGGTGAAGAAGATAAACAGCTTCTACTGTCAAGCCTAAATATTA
CAAAATCCAAGACACTAGAGAACTTGGAAGAAGTCATCAACAATGTCACA
TGGCCAAGGTTATCATACGAGTTGGAAAGATTGGGAAGAGTGGACATAGT
GAAGCATATCACCAAAAGGACCCTTATCACTTCAGAAGACCACACTGAAT
CAAAAACAGG
Gene-mRNA-Prot
This mRNA is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
MSTRG.11365MSTRG.11365Clytia hemisphaerica_ch_hm2_pilongene
The following exon feature(s) are a part of this mRNA:
Feature NameUnique NameSpeciesType
MSTRG.11365.1.p1.exon3MSTRG.11365.1.p1.exon3Clytia hemisphaerica_ch_hm2_pilonexon
MSTRG.11365.1.p1.exon2MSTRG.11365.1.p1.exon2Clytia hemisphaerica_ch_hm2_pilonexon
MSTRG.11365.1.p1.exon1MSTRG.11365.1.p1.exon1Clytia hemisphaerica_ch_hm2_pilonexon
The following polypeptide feature(s) derives from this mRNA:
Feature NameUnique NameSpeciesType
MSTRG.11365.1.p1MSTRG.11365.1.p1-proteinClytia hemisphaerica_ch_hm2_pilonpolypeptide
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0000082_pilongenomesc0000082_pilon:349990..353471 -