MSTRG.11325.1.p1 (mRNA) -

Overview
NameMSTRG.11325.1.p1
Unique NameMSTRG.11325.1.p1
TypemRNA
OrganismClytia hemisphaerica_ch_hm2_pilon (Jellyfish)

Sequence
The following sequences are available for this feature:

mRNA from alignment at sc0000081_pilon:1183219..1185767+

Legend: five_prime_UTRexonpolypeptideCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>MSTRG.11325.1.p1 ID=MSTRG.11325.1.p1|Name=MSTRG.11325.1.p1|organism=Clytia hemisphaerica_ch_hm2_pilon|type=mRNA|length=2549bp|location=Sequence derived from alignment at sc0000081_pilon:1183219..1185767+ (Clytia hemisphaerica_ch_hm2_pilon)
ttttttttctgtatCTCACCTTTAGCGAGTAAAGTGAGATGAAATTCTCT
TTCAATCTTATAATATTGTTAGTGttaatagatttttttcttcccactca
gttttccaagtttttaatatatttttatcttttcatttcattttgagaca
gtattttttgttttgccagCGTGGAGAGAAGAAGGATCATCCAAAAGGTT
ATTATTTTGTTCCGACGAATTTTTTCTGCAGTTTGAacggttaaaaaaat
tttattttgagttTGTAGCAATTCGAAAAATGTTATAGAAATAATATTTA
GTACTTTTCTCTCAATGAACCCTAGTGTAACGAAAATCTTAACTTTTCTA
TGTTCATCATTTCTGCTGAGATTTTGCAGACTATTGTATATTCCAGTATA
TCTTTCCGgcaaaattttattcatttattttgcTGATTGGATGATTGGAA
TTTAGATTTAAATACGGTTATTCGACGACTTCACTATCTTATGGATAGTT
TTTACAATTTATTGGGTTCCTAGCTGAAGTTCTAAAGTAAAAGAGAATTT
TGCAAATTggccattttttcaaattttgtgaaGTGGATCGCTCCTATACG
ATCAAATGAATGAGAGATACATTTCCAGAAAGTATGCCccgaaaacgtca
aaaagtcgAAATATAGACACTCGTACTCTCtactttactacagtgtactt
ttacttttacgtttttcactttttctctagTTCAGATAATATGACGACAA
AGACAGGCAAAGGTGGTGTAACAATCTATTATGAAAACTGGCTTCTACGT
AAAGAAGGCGTCAAACAGTGGGCGGAATATTGGGGCGTGATCCGTGGTAA
ATGGCTTCAATTTTACGAAAGGACAAGCGAATATAATCGACCAGAGTTAC
GTAAAACGTTGGAAATAACTACAAATACGAAATGCGCTTTGGTGAAACGT
AACAAAAATAGATATCCGTTTTCTATCGATAACGGTAGTGGAGTTTACTA
CATGAAAGTTGAAACAGAACTGGAACGTTATCATTGGATTGTGTCAATCT
TAACGGCTTCCTTGGGTAAACCGAAACGGGAATTACCGGAACAAGTTCCG
GAAACGATGAAAGAAGCGGAAACATTCCGGAAATTAACGAAAGTGGAGAA
GCAAGAAATGAGGAATAAGCTACCGCCGAAACCAAAGAAAGAACCAATCC
CTGCGTCTGACATAACTAATAAGCGTCGGCGTAAATTCGCAGAGAGGCGG
GAAAATAAGGTGAAGAAAAAAGAGAGAGCTCGTTTAAGAAAGTTGGGTTT
GGATCCTGATGAGCACATGGAAGGAGGGTCTAACGATGACGAAGAGCTGG
AAGAAATTTCAAGGCATCCTGAGCACTTCCGCAGAGcacaaaatgtaaac
aagctAACGAGCGAAAATCTTGCGTTACATAATCGGAATAAACTATCGGT
CGATGATCGTATTCGTCAACGAGAAAAGATTCTTGGCTCATCACCCAATT
TCTTGAAACCGAAAACTTCCGAATTAGAATCATCGCAAAGCACGGTGGAA
ATCAAAGCTATGATACATCCGCCGTCAGCTTCTACAGCCAATAAGAAGCA
AGAAAGAAATAGTGATTCTTCTCACTATAACCGAGCATTTGAAAACGACG
ATATTGAAGAATTACCGACAATTCCCGTCACTTTGAACGATGATGGATTA
TTGCCGAATATGGTGTTCACCGAGCTTTCCGACAGCGAACCGGAAGAGCC
AACAACCGAAGAAATAAGCATAAACAGTAATAACGAGTCTTTATTAAACA
TTGGCGATTTCGATATGACCCAACCAAGACGCGGTAGCGCCACGATCCTG
TCACGCACCGTTCTCTCTGAGAGCGGAGTACGTCAATATTCGGAGTCCCC
AGATCCAATAAAAATGATGAATCGGGGCGGAAAACGCCCTACTAGTGCTA
AATTATCACCGGGTGGTTTAATGGAACGCCCCATTAGTCCTTTAATGACA
AGACCAATGAGTCCATTAATTGGAGGTTCGGGACGCCCAAAAAGTCCAAA
TAACTTGAAGAATAGTGATGACTTTGCAAGGTACTTAGATGAGACCTCCA
CTGTGTGAATCCTAATCGAATTCGACGAATTTcagatataatttttattt
tgtgtggcgtgaatttttttgttaacCTTGTGTGGTATTTAGGggggaaa
aagaaaatttaaagtatGATACAACATTAGAAGAACTTGTCTTTCGTGCC
AGAATCTGCAAACAAGGACTTTTTTCGAATAACTGGTATGATCAGCTAAT
GGTCcaataaaattgagtttttacattaagaaaaaagttaaaatttggcT
CAAAATTTGGTACATTATCGGAGGAAAGTGACGAAGACTTTAAAGAGGTG
ATGAAATTTTTACccgtcgaaaaaaaatttcccgtcATTTTATTATCTGA
CAAAGCTTGGAATGGATTTTAAAGAggaaatttggcggatttttttGTCC
AAATACCCTCATTACATAAGTGCAATTTGATTTTAAGCCTTGAACAAGC

Coding sequence (CDS) from alignment at sc0000081_pilon:1183219..1185767+

>MSTRG.11325.1.p1 ID=MSTRG.11325.1.p1|Name=MSTRG.11325.1.p1|organism=Clytia hemisphaerica_ch_hm2_pilon|type=CDS|length=1368bp|location=Sequence derived from alignment at sc0000081_pilon:1183219..1185767+ (Clytia hemisphaerica_ch_hm2_pilon)
ATGACGACAAAGACAGGCAAAGGTGGTGTAACAATCTATTATGAAAACTG
GCTTCTACGTAAAGAAGGCGTCAAACAGTGGGCGGAATATTGGGGCGTGA
TCCGTGGTAAATGGCTTCAATTTTACGAAAGGACAAGCGAATATAATCGA
CCAGAGTTACGTAAAACGTTGGAAATAACTACAAATACGAAATGCGCTTT
GGTGAAACGTAACAAAAATAGATATCCGTTTTCTATCGATAACGGTAGTG
GAGTTTACTACATGAAAGTTGAAACAGAACTGGAACGTTATCATTGGATT
GTGTCAATCTTAACGGCTTCCTTGGGTAAACCGAAACGGGAATTACCGGA
ACAAGTTCCGGAAACGATGAAAGAAGCGGAAACATTCCGGAAATTAACGA
AAGTGGAGAAGCAAGAAATGAGGAATAAGCTACCGCCGAAACCAAAGAAA
GAACCAATCCCTGCGTCTGACATAACTAATAAGCGTCGGCGTAAATTCGC
AGAGAGGCGGGAAAATAAGGTGAAGAAAAAAGAGAGAGCTCGTTTAAGAA
AGTTGGGTTTGGATCCTGATGAGCACATGGAAGGAGGGTCTAACGATGAC
GAAGAGCTGGAAGAAATTTCAAGGCATCCTGAGCACTTCCGCAGAGcaca
aaatgtaaacaagctAACGAGCGAAAATCTTGCGTTACATAATCGGAATA
AACTATCGGTCGATGATCGTATTCGTCAACGAGAAAAGATTCTTGGCTCA
TCACCCAATTTCTTGAAACCGAAAACTTCCGAATTAGAATCATCGCAAAG
CACGGTGGAAATCAAAGCTATGATACATCCGCCGTCAGCTTCTACAGCCA
ATAAGAAGCAAGAAAGAAATAGTGATTCTTCTCACTATAACCGAGCATTT
GAAAACGACGATATTGAAGAATTACCGACAATTCCCGTCACTTTGAACGA
TGATGGATTATTGCCGAATATGGTGTTCACCGAGCTTTCCGACAGCGAAC
CGGAAGAGCCAACAACCGAAGAAATAAGCATAAACAGTAATAACGAGTCT
TTATTAAACATTGGCGATTTCGATATGACCCAACCAAGACGCGGTAGCGC
CACGATCCTGTCACGCACCGTTCTCTCTGAGAGCGGAGTACGTCAATATT
CGGAGTCCCCAGATCCAATAAAAATGATGAATCGGGGCGGAAAACGCCCT
ACTAGTGCTAAATTATCACCGGGTGGTTTAATGGAACGCCCCATTAGTCC
TTTAATGACAAGACCAATGAGTCCATTAATTGGAGGTTCGGGACGCCCAA
AAAGTCCAAATAACTTGAAGAATAGTGATGACTTTGCAAGGTACTTAGAT
GAGACCTCCACTGTGTGA
Gene-mRNA-Prot
This mRNA is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
MSTRG.11325MSTRG.11325Clytia hemisphaerica_ch_hm2_pilongene
The following polypeptide feature(s) derives from this mRNA:
Feature NameUnique NameSpeciesType
MSTRG.11325.1.p1MSTRG.11325.1.p1-proteinClytia hemisphaerica_ch_hm2_pilonpolypeptide
The following exon feature(s) are a part of this mRNA:
Feature NameUnique NameSpeciesType
MSTRG.11325.1.p1.exon1MSTRG.11325.1.p1.exon1Clytia hemisphaerica_ch_hm2_pilonexon
MSTRG.11325.1.p1.exon2MSTRG.11325.1.p1.exon2Clytia hemisphaerica_ch_hm2_pilonexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0000081_pilongenomesc0000081_pilon:1183219..1185767 +