MSTRG.11305.1.p1 (mRNA) -

Overview
NameMSTRG.11305.1.p1
Unique NameMSTRG.11305.1.p1
TypemRNA
OrganismClytia hemisphaerica_ch_hm2_pilon (Jellyfish)

Sequence
The following sequences are available for this feature:

mRNA from alignment at sc0000081_pilon:933088..934944-

Legend: polypeptideCDSexonthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>MSTRG.11305.1.p1 ID=MSTRG.11305.1.p1|Name=MSTRG.11305.1.p1|organism=Clytia hemisphaerica_ch_hm2_pilon|type=mRNA|length=1857bp|location=Sequence derived from alignment at sc0000081_pilon:933088..934944- (Clytia hemisphaerica_ch_hm2_pilon)
ATAAATACTACACTAAATGAACTGCAAAAGACAGCAACCTTTTTGGATCA
ACAAGAAGAACAAGATAGTCAAATAACATTGATAAAGGTAATACATTTTG
TTCAGTGTACGTTAGTTCAATGAAAGGAAAAATATTTTGATACTTTTACA
CAGCCTTGTTCAATGCGTATTATCGGCCTTTTTATGCTTACTGATAGCGT
CAGATAATACTCTCTGGTGTCCATCAGTAGCGTAAATAAAGCCTGGAATA
CACGGGGACGAAATCGACTTTGACATGCATCTAATTCTCTAGTACCATAA
CGGGCCTTCAGCACAACCTTGTCTAAAAGAGTTCTTTATACTATGGCTTC
ATGAAAATATCTTCACAGTGAATTAAAAATTTGATTTCAAGCTTTTTTCT
TTTCACTTTCATTTTCCACAGAGCACAATGATGAAACTCGCAAGTGTTTT
GGTCTTTTTGGCCGTTGCATCTTCCATCGAAGCAGGTTATGTCAACCGAG
GTAAGAAATCAAATTTTATTAACAAAGATAATGAGACTGCCCTGAATATG
TGCGCTACAAAAGAATCCTACCATGCGGTCAGTTGTACACACATACTGAT
CACTGCTTTTTTACCTAAGCATCCATCCAGAGGATTGGTAATGAGTGAAA
CGGTGTAATAATTTTATTTCTTTTTCATCAAAAACCAACAGTGGTCATAA
GATCGTACAGGTCGACTTATCTCCTTGTAAGGTCACCACCATTGAATATG
CACCAAGCTAAACACGCATGCGCAAGATTTGGAGGTTTCTTGGCAACTAT
CAATAATCAACGAGAGCACCACTTTTTGGTTGCTAAATTACAGTAAGTAG
AATACAAAATGCAAAACATTGAAAATAAAGATTAAAAATTAATGTCTCCC
ATTCCGAAGAGTTAAAAAATCAGACTTCTGCATTAACACGCATGCGTGAT
TTGTCGTTCTTTTAGACCACATGTAGTTAATTCCCGTGATAAAGGATTGG
GAATGAATCGGTAGGGTTGGTTCAGTCACTTTTCAGTCGGGGTTGTGGAC
GGCCAAAAGTAGACTTTTTTTATTCTTCCTTTTTGACCCTTTCGATATTT
TCGATTTTTGATTATTTCGATCTTATCAGTTAGGGTCAGGGTTGGAGCTC
GAAACATTGCGTCATTATTTAGATGATCTGTAAAGTGTAGAAGAGGCTTT
CTGGGGGAAATTTTATACTCTTCGGAATAGGACCTTCTGGGACCTTTCAC
CCTCTCATAAGCAGGGTGCTAATTCTAAATTGCTAGAGGCCGGAACAAAA
TAGTCTTTAAGCAAAATAGACCTAACTTCCTTTTCTAAGTTGATTACAAT
CAGTCATACGATGATTAGACATGAAATTGGTCGTATTGTATCATTAAATA
ATTTGCTTTAATTATTCACTTCTAAAATCGTGTAGCTTAATATTTCTCAT
TCTTATTTTCACAAAGGCACTATAATATTCGTTCCGCTTGGGTCGGATTG
AACGACAAAGCTAACGAAAAAGTCTTCAGGTGGGATGGTTCAAATGTCGC
AGGATTCAAGAAATGGTGTCCACATGAACCAAACAATTTTCGATATGGTG
AAGACTGCGTTGAGTTACTTGGTCCCGTCAATTACAAATGTTTGAACGAC
CTTCCATGCACACGTGTTTTACCGTACATCTGTGAAGTCGCAAGAAGATC
TTACTAATAATTTCACGCTGATTAAAACATCAAATAAACTTTGTTTTTAT
TTTTTAAATTTTGAATGTAGTAACATTGTAAGATTACTCGTTAATCACAA
AATGGAAATAAAAAAATTCATTATGCATGAATCTTAAACGAACATTTTAG
ATAACTT

Coding sequence (CDS) from alignment at sc0000081_pilon:933088..934944-

>MSTRG.11305.1.p1 ID=MSTRG.11305.1.p1|Name=MSTRG.11305.1.p1|organism=Clytia hemisphaerica_ch_hm2_pilon|type=CDS|length=2232bp|location=Sequence derived from alignment at sc0000081_pilon:933088..934944- (Clytia hemisphaerica_ch_hm2_pilon)
GCACTATAATATTCGTTCCGCTTGGGTCGGATTGAACGACAAAGCTAACG
AAAAAGTCTTCAGGTGGGATGGTTCAAATGTCGCAGGATTCAAGAAATGG
TGTCCACATGAACCAAACAATTTTCGATATGGTGAAGACTGCGTTGAGTT
ACTTGGTCCCGTCAATTACAAATGTTTGAACGACCTTCCATGCACACGTG
TTTTACCGTACATCTGTGAAGTCGCAAGAAGATCTTACTAATGGTCATAA
GATCGTACAGGTCGACTTATCTCCTTGTAAGGTCACCACCATTGAATATG
CACCAAGCTAAACACGCATGCGCAAGATTTGGAGGTTTCTTGGCAACTAT
CAATAATCAACGAGAGCACCACTTTTTGGTTGCTAAATTACAAGCACAAT
GATGAAACTCGCAAGTGTTTTGGTCTTTTTGGCCGTTGCATCTTCCATCG
AAGCAGGTTATGTCAACCGAGATAAATACTACACTAAATGAACTGCAAAA
GACAGCAACCTTTTTGGATCAACAAGAAGAACAAGATAGTCAAATAACAT
TGATAAAGGCACTATAATATTCGTTCCGCTTGGGTCGGATTGAACGACAA
AGCTAACGAAAAAGTCTTCAGGTGGGATGGTTCAAATGTCGCAGGATTCA
AGAAATGGTGTCCACATGAACCAAACAATTTTCGATATGGTGAAGACTGC
GTTGAGTTACTTGGTCCCGTCAATTACAAATGTTTGAACGACCTTCCATG
CACACGTGTTTTACCGTACATCTGTGAAGTCGCAAGAAGATCTTACTAAT
GGTCATAAGATCGTACAGGTCGACTTATCTCCTTGTAAGGTCACCACCAT
TGAATATGCACCAAGCTAAACACGCATGCGCAAGATTTGGAGGTTTCTTG
GCAACTATCAATAATCAACGAGAGCACCACTTTTTGGTTGCTAAATTACA
AGCACAATGATGAAACTCGCAAGTGTTTTGGTCTTTTTGGCCGTTGCATC
TTCCATCGAAGCAGGTTATGTCAACCGAGATAAATACTACACTAAATGAA
CTGCAAAAGACAGCAACCTTTTTGGATCAACAAGAAGAACAAGATAGTCA
AATAACATTGATAAAGGCACTATAATATTCGTTCCGCTTGGGTCGGATTG
AACGACAAAGCTAACGAAAAAGTCTTCAGGTGGGATGGTTCAAATGTCGC
AGGATTCAAGAAATGGTGTCCACATGAACCAAACAATTTTCGATATGGTG
AAGACTGCGTTGAGTTACTTGGTCCCGTCAATTACAAATGTTTGAACGAC
CTTCCATGCACACGTGTTTTACCGTACATCTGTGAAGTCGCAAGAAGATC
TTACTAATGGTCATAAGATCGTACAGGTCGACTTATCTCCTTGTAAGGTC
ACCACCATTGAATATGCACCAAGCTAAACACGCATGCGCAAGATTTGGAG
GTTTCTTGGCAACTATCAATAATCAACGAGAGCACCACTTTTTGGTTGCT
AAATTACAAGCACAATGATGAAACTCGCAAGTGTTTTGGTCTTTTTGGCC
GTTGCATCTTCCATCGAAGCAGGTTATGTCAACCGAGATAAATACTACAC
TAAATGAACTGCAAAAGACAGCAACCTTTTTGGATCAACAAGAAGAACAA
GATAGTCAAATAACATTGATAAAGGCACTATAATATTCGTTCCGCTTGGG
TCGGATTGAACGACAAAGCTAACGAAAAAGTCTTCAGGTGGGATGGTTCA
AATGTCGCAGGATTCAAGAAATGGTGTCCACATGAACCAAACAATTTTCG
ATATGGTGAAGACTGCGTTGAGTTACTTGGTCCCGTCAATTACAAATGTT
TGAACGACCTTCCATGCACACGTGTTTTACCGTACATCTGTGAAGTCGCA
AGAAGATCTTACTAATGGTCATAAGATCGTACAGGTCGACTTATCTCCTT
GTAAGGTCACCACCATTGAATATGCACCAAGCTAAACACGCATGCGCAAG
ATTTGGAGGTTTCTTGGCAACTATCAATAATCAACGAGAGCACCACTTTT
TGGTTGCTAAATTACAAGCACAATGATGAAACTCGCAAGTGTTTTGGTCT
TTTTGGCCGTTGCATCTTCCATCGAAGCAGGTTATGTCAACCGAGATAAA
TACTACACTAAATGAACTGCAAAAGACAGCAACCTTTTTGGATCAACAAG
AAGAACAAGATAGTCAAATAACATTGATAAAG
Gene-mRNA-Prot
This mRNA is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
MSTRG.11305MSTRG.11305Clytia hemisphaerica_ch_hm2_pilongene
The following polypeptide feature(s) derives from this mRNA:
Feature NameUnique NameSpeciesType
MSTRG.11305.1.p1MSTRG.11305.1.p1-proteinClytia hemisphaerica_ch_hm2_pilonpolypeptide
The following exon feature(s) are a part of this mRNA:
Feature NameUnique NameSpeciesType
MSTRG.11305.1.p1.exon4MSTRG.11305.1.p1.exon4Clytia hemisphaerica_ch_hm2_pilonexon
MSTRG.11305.1.p1.exon3MSTRG.11305.1.p1.exon3Clytia hemisphaerica_ch_hm2_pilonexon
MSTRG.11305.1.p1.exon2MSTRG.11305.1.p1.exon2Clytia hemisphaerica_ch_hm2_pilonexon
MSTRG.11305.1.p1.exon1MSTRG.11305.1.p1.exon1Clytia hemisphaerica_ch_hm2_pilonexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0000081_pilongenomesc0000081_pilon:933088..934944 -