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Sequence
The following sequences are available for this feature:
mRNA from alignment at sc0000080_pilon:1285852..1292018+ Legend: five_prime_UTRexonpolypeptideCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below. >MSTRG.11233.1.p1 ID=MSTRG.11233.1.p1|Name=MSTRG.11233.1.p1|organism=Clytia hemisphaerica_ch_hm2_pilon|type=mRNA|length=6167bp|location=Sequence derived from alignment at sc0000080_pilon:1285852..1292018+ (Clytia hemisphaerica_ch_hm2_pilon)
GGGAAAGTAAAACACAACACCAAAGTGCCAACTTGTCAATACAAACTCAC
ATCGAAATtataaaatttccttttttctttatctttttctaCTTCCATCT
CGTCATAGCTTTAACAAATATATATTGGAAGGCACATGGTGAAAACCCCt
tttttttGGATGGCATTTCAAAGAAATAGTGACGATGTAGACGGTAATAA
ATATTCGGAAAAGTAGATTGCACTTGTATATTGCGCACATTTGGAAGAAA
TgggtgtattttttatcaattggATCACCCAGTTACCGGGTCCTACTAAA
AACTTACTACTTAGGACCGCTATATTTCTAGCATATCTTCTTCTGGGGGC
TGTTATATTCAAAACGCTCGAATCAACACAAGGAGCAAAAGAACAGAATC
ATTTTCGCATACGAAAGCGATTGTTTCAACAGACGTATGGTATTAACGAT
ACTGTCTTCGAGGATTTTGTTGAAGAAGTTCGAAGAGCTGTCGATGATGG
TTATTTCGATGTGGAGTTTGATCGTTGGAGTTTCTTTGGTTCTGTATTTT
TCACAGCAACTGTTCTTACAACAATAGGTAAGATTAATTTCTTTCGTGTT
AGTTTAATGgaataaattttcgcgaggattaaatttcgcggtccCATTAT
AGTAGTTGCATTGGGAATTGATGTTTTTGAATCACTTTTAATCGTCAATT
TAatcgtcgtcaatttttttgtcatgaaaatttctttattaaATTCGGAT
CCCGTGTCTCAACATCTCCATGATAGAGACCTTATGAGACCCACCTCACC
AGAAAATTAGGGaaaagatttcagaaaaatgccctaagtttcagccccac
tggaaaattggttTAGACTTCATCCCCACttgaaattcaatagaaaatAT
GCACTCCGAAACCATCCCCATCGAGAACTCTcctaaaatgacaaaaattt
tgcTTGATTTTCTTACTGGAATTCCAATCCCACCCGCCTTTGCCTTATCA
TTATTTAGTCTTTTTGCGTTGGGTATGACTGTTTAGAAGCATCGTATGAG
AAGcatgagaaaaaaattagaaagttaGACGTTTTGTCAGTCTTATTGAC
AGTAAAAAGAATTGATCATTCATGTGAAAACCAGTTGCCACAAAACGTTG
CTTTAACAGTTCATCTAGCTTTATAATTGTCGTTCGGGACGTTTGATGGA
CGTGTTTTATATCATTTGGGGAATCTGTTCTTGACAAGAAGGAGGTCGTA
AATGAACATTATTTAGAagcatacacattttttataagaacatccaaact
ttttgaagccttcggatgttcttattttttatttttgaacctAAAACTGT
TCtcaatatgttcttattttcaccattattttggtcaattttccgaagaa
attgggtgtttttggGTCCGAAAAAGCCTTACataatgttctcaacttgt
ttttaatataaTGGCCATCGAATCCTTACGTTCTTATGtagtttcttctt
ataaaataaacatGTAAACATTTTCATCATGTGAGGAAATgattcaagtt
tttctttgaaaatcaacTCATTTTGATTACAATTTCCCAATATATTACTT
TTTGTGACCTCTGGCCTTTTGAAGGATTTCACATACGACCATTCAAATGA
GGAAAACCATGAAAAATAAGTTAGCAAAATAGttcaaatgaaataaatat
CCATTAGATGAAACTCATCAAATAATGTAGAACCTGTCTTCCAAATCGTC
TTTTAGACATAACAGACTGGTgaattaaattaaagaaaaaatttcttcac
gaAGTTTTCCGTTCACCGTAAATTGGAATAAATTTGACgttgatttattt
tcgcgattttcgcaaaTTATTGCTGTTTAGGGCTGTATTGGGTGTTTAGG
GCTGTATAGGATGTTTaatttttcgcggaatttagtccttgcaaaaaaat
tataatcatGGTCTTTGTCAAAACCCCAAGCAAAATGCAAGATTAGGTAA
AAAAGAGACCGATTCGCGAAAGTGTACCCTCTTAAGgtacaaataaaata
aaagatccTAAATTAGCGACCCAAAACAGAATGAATTCGCAAAGTAGTTA
CTGTGCAATATGCCCTTGGgaaaagtctttcaaagggGTCATCTTTTATC
AATAATCAATAACATAAAGGGTAATACACGCAACCCAATACTCCAAAACC
CTAGGACCTCTCCAGGGACAAAATGTAATCTATACCTAAATTAAGTAGCT
AAATTGTTCGATGGCAGAATTTATTGTATACTAAGTTTCTCTGATTAAGA
TATGGACCAGATTTTAATCTTCGATACGACATATTTTTATAACTCCTAAT
TCTAAAGGGGCTCTAAAGACGGTTAAAAATCTCTCTGAGATGGAGGGGAG
AATAAAGGAAAGCACAAGGGTGAAGAAGGGGGTATTTTTGTTATGGAATG
GTGATAAAATCAACAATAGGGTGCTAAAGTGTTATCAATTTCTAGCTATA
AAAATAACCATGGTTACTAGTCTTTTGTTTCCCACAACAAAGGAAAATAG
TGTATCATTCTTCGTTATACTTCCTTTCCCTacttaattgttttattttt
cacttttcgtCACTCATTGTTCAAAATGTATTACAATTAGGAAGCTGTTA
CCTTCTTTTCCCCCTTTTTAGCGACTAAATATGGTATGAAATGTATTTAA
AATATTCATTGACGTTAATCTTCAAACTTCTGTATTCTTCACATCCACcg
agattaaatttttttctttctgaaattttggagattaaaatctcaaaaat
tctcaaatttttttataaaaaaaacgtgtaaatcatTTTAGCTTGAGTCG
GTCGCTCTTGCTGCATCTAAAATCGACCccaaaagaaatttaattttctc
aaatcaaaacactctcttttataagaacaattttattaagAACAATGAGG
GTAAAAGAATGCAACAAAAAATGAACAATTTTAGAACAGTGATGAATGGC
TGAATGAATGTCCTGGAATGGCtaattttaaataatataaaggaaaaatt
agtaaaaatagccgttaaacttaaaagaaatataataaagaaataaaaat
aataatttgaggctgaaagtgccaaaaataGGTACAGACGAACCTCATCA
GAAATTTACTGGTtattaaaaaaagagtgtattcaTTGCCAGATTTCCTT
GAATTACGTCCTCAAAATAAGTTACGGCAGCGGGAAGAAATCGCTACAAA
TGCATTGaaaaaaaGATGACAAACCAAATCAATTTACATTTCAGTAACCT
CCTCCTCTAGAGTCGCgtttctttcttgaaaataatCGAGACTTTAACTT
AACTTTCAACTTGACGAAAGTTTTAAAACCTTTTCATTTTATCACTTTGG
gtttttcaaacattgttcAATTGTTACTTCTGCGTTCTGAACCATGCTTT
TTTAAGCGTCTAGAGAATCTGAAAGCTTTTGACAGATTGAATAGGAATAG
TAGCACTCCCTGTAATTGAGCCGAAGAGTGGACTAATTTCATTAAGAACT
TTcgtttattcgaatctttctataattcgaacttgtttcctgtCCCCGGT
CAAGGAGAAACTcccttaaaatactttctataactcgtatatttatttca
ctgtataattcgaatctctttgtagttcgaacaaataagatcccctattg
ggctcttccagaaaatgtccatACATCgagggtggaggatattattgtcc
ggggggtagcgaaaaatcatcaaaatttgccttgtccgggggtaaatttg
ctctgtccggggggccaaaagtcacttggtccggggggtaaatcacagAA
AATTCCTTCCTATTttccacccccatattcaattttttcctggaaaagcc
cattcgaGTTCGAATCAGTGAAAGTCAACAGTACAAATTATTTCTTATTC
TGTTTAGGTTTTGGTCATATGGCACCGCGAACATTTGCTGGTCgactatt
ttgtattttttatgcCCTCTTTGGTATTCCACTGACTGGTTTGATGCTGA
AATCTTTCGGTAATTGCATTCATTATCTTTCTCATATATTAGATGACTCC
CTTTACTGCTCATTAAAAAGTTTCATTCATTTGAGTGAAAGATTTCTCTT
TTAGTCTTAcaatgctcttattttcagcatttcttgTGTAATTTCCAACG
AATTTACTTGTTCTATAGCCTATAACGCCATAGAGTGTTCTTAATTTTAG
GAATGTTCTCTTACACTTTGTTCTGTATAAAAGACcgtgaaaatgaaaca
aataatcgaaacttgaaatttcaggTGAAAAACTTGTCTCTGCAATTGAT
ACAATCGGACGAATAATCAAAGATAAATtacgaaagaagaaaaaatcagc
TTTGGATCGAGACGGTGAGAAAACACAAGTGGCCTTGTTCACTACGGTGA
CGTTATTCATGATAATGATATCAATGCTACTTCTGCTGGCGGGAGTTGCT
ATGAAGTATGAAGGTTGGAGTTTCTTTGAAGGTTGTTACTTTGGTTTCGT
CACCTTAAGCACCATTGGTTTCGGTGATCTAGTACCAACCACACCACGTC
AAGGTTTTAACGGCGCGTCGCATGCTCATGTCGCTCTTTTCATTGTCATG
ACGGGTATATACATTACGCTTGGCCTTTCTGTCGTGTCAAGTGTATTGGT
TTCACTTTCAAGAATGCTTGAGGATAAAACAGACTGGGAATTTGTCTCTC
TCCGTGAAGATTATGATGATGGTGATGATTATGAGACTTTCCATGAAAAT
GAAACTCTGATAGAAAAATGATAACAATCCTCTATACTATGATACTCTTT
CTCTCTTTCTTGAACTTAATATAAAAATGATAATGAACGCGTTTGTTTCT
TGGAAACATTTTATGTCTAACTAtaggttgtttttatttttgttgtattA
ACTAAGAGACTTTGACTTTGACAGGAATCTGACGGTTGCCAagccaaaaa
aaacttctttcagGCTAAGCTTCCATGACTCGACAATATTCCTAATTTTA
GGAAAATATTCATGTATCTTCTACTTTACgcactactttaggcgtacaag
cTTTCGCGAGCAGCAACTTTCGCGCGGACGAAAAATCGCGGAATGCACgg
catttactttcgcgaatttgatgaaaaaatgtttttcgcgagcataaact
ttcgcgaatcgttggataaaaatgagaattttcgaatgaaaattgcctta
aaagtgaaaagtattccttaaatctgataaagacggttgctcttcgactt
taaaaaggcatgGAAGGATAAAAATATGCCGAAAATTCGATAattattac
gatttcgagattttatagatttccactttttttgagaatttttcgcgagc
ataaactttcgcgaattgccctattaagaattttcaaatacatttacttt
cgcgaaaaaggccaaaattcgcgaaaatcgcgaaagtttctgctcgcgaa
aaattgtacgcctaaagtactttttaCTATTCTACAAAGGTGCTTGAATC
TATTCCAGGCTCAGttttttttGTCCTAAAAATGATCATCGTTTTTTGgc
aatatttcatatttcagaATACGAAACGTAGCTACTCCgggggggagggg
gcagtcaggcaaattcaccgacgggtatgtgcggcggttaagggtatgat
ttttaagatagtaaaaatgcactgtaagggtataaaTATCATCGATTCTT
TACTGAACTTTAAGGGCGCAATTCTGAAAGCCATCGAACacaccgtcagt
tggtaaacccactacCACCCTCTCCCCGGAAAGACTACGTGCCGTACTAG
AAGTATAACATATATATCATGACAGCTAGAAGCTTTACCAAAGTCtctta
aaaaaagctttttattttgtaagaattttaaaaacatgGATTTTATTGTT
TAGGGGCTAGAGgttagtttttttatcattattaggCTTCTTGCTTGCTC
AGTGTTGTTTTACAACGTCGAGTGAAGAAAGTAAGggcaaaactatttta
tttttttttcatttggacgtttttaaatgtctttcattttttatgctCAT
TAAAAATAtgtatgcaaaaaaaaagatgtgTTCATGAGATGTGTTCTATT
ATtctaattgatttgat Coding sequence (CDS) from alignment at sc0000080_pilon:1285852..1292018+ >MSTRG.11233.1.p1 ID=MSTRG.11233.1.p1|Name=MSTRG.11233.1.p1|organism=Clytia hemisphaerica_ch_hm2_pilon|type=CDS|length=2781bp|location=Sequence derived from alignment at sc0000080_pilon:1285852..1292018+ (Clytia hemisphaerica_ch_hm2_pilon)
ATgggtgtattttttatcaattggATCACCCAGTTACCGGGTCCTACTAA
AAACTTACTACTTAGGACCGCTATATTTCTAGCATATCTTCTTCTGGGGG
CTGTTATATTCAAAACGCTCGAATCAACACAAGGAGCAAAAGAACAGAAT
CATTTTCGCATACGAAAGCGATTGTTTCAACAGACGTATGGTATTAACGA
TACTGTCTTCGAGGATTTTGTTGAAGAAGTTCGAAGAGCTGTCGATGATG
GTTATTTCGATGTGGAGTTTGATCGTTGGAGTTTCTTTGGTTCTGTATTT
TTCACAGCAACTGTTCTTACAACAATAGGTTTTGGTCATATGGCACCGCG
AACATTTGCTGGTCgactattttgtattttttatgcCCTCTTTGGTATTC
CACTGACTGGTTTGATGCTGAAATCTTTCGgTGAAAAACTTGTCTCTGCA
ATTGATACAATCGGACGAATAATCAAAGATAAATtacgaaagaagaaaaa
atcagcTTTGGATCGAGACGGTGAGAAAACACAAGTGGCCTTGTTCACTA
CGGTGACGTTATTCATGATAATGATATCAATGCTACTTCTGCTGGCGGGA
GTTGCTATGAAGTATGAAGGTTGGAGTTTCTTTGAAGGTTGTTACTTTGG
TTTCGTCACCTTAAGCACCATTGGTTTCGGTGATCTAGTACCAACCACAC
CACGTCAAGGTTTTAACGGCGCGTCGCATGCTCATGTCGCTCTTTTCATT
GTCATGACGGGTATATACATTACGCTTGGCCTTTCTGTCGTGTCAAGTGT
ATTGGTTTCACTTTCAAGAATGCTTGAGGATAAAACAGACTGGGAATTTG
TCTCTCTCCGTGAAGATTATGATGATGGTGATGATTATGAGACTTTCCAT
GAAAATGAAACTCTGATAGAAAAATGAATgggtgtattttttatcaattg
gATCACCCAGTTACCGGGTCCTACTAAAAACTTACTACTTAGGACCGCTA
TATTTCTAGCATATCTTCTTCTGGGGGCTGTTATATTCAAAACGCTCGAA
TCAACACAAGGAGCAAAAGAACAGAATCATTTTCGCATACGAAAGCGATT
GTTTCAACAGACGTATGGTATTAACGATACTGTCTTCGAGGATTTTGTTG
AAGAAGTTCGAAGAGCTGTCGATGATGGTTATTTCGATGTGGAGTTTGAT
CGTTGGAGTTTCTTTGGTTCTGTATTTTTCACAGCAACTGTTCTTACAAC
AATAGGTTTTGGTCATATGGCACCGCGAACATTTGCTGGTCgactatttt
gtattttttatgcCCTCTTTGGTATTCCACTGACTGGTTTGATGCTGAAA
TCTTTCGgTGAAAAACTTGTCTCTGCAATTGATACAATCGGACGAATAAT
CAAAGATAAATtacgaaagaagaaaaaatcagcTTTGGATCGAGACGGTG
AGAAAACACAAGTGGCCTTGTTCACTACGGTGACGTTATTCATGATAATG
ATATCAATGCTACTTCTGCTGGCGGGAGTTGCTATGAAGTATGAAGGTTG
GAGTTTCTTTGAAGGTTGTTACTTTGGTTTCGTCACCTTAAGCACCATTG
GTTTCGGTGATCTAGTACCAACCACACCACGTCAAGGTTTTAACGGCGCG
TCGCATGCTCATGTCGCTCTTTTCATTGTCATGACGGGTATATACATTAC
GCTTGGCCTTTCTGTCGTGTCAAGTGTATTGGTTTCACTTTCAAGAATGC
TTGAGGATAAAACAGACTGGGAATTTGTCTCTCTCCGTGAAGATTATGAT
GATGGTGATGATTATGAGACTTTCCATGAAAATGAAACTCTGATAGAAAA
ATGAATgggtgtattttttatcaattggATCACCCAGTTACCGGGTCCTA
CTAAAAACTTACTACTTAGGACCGCTATATTTCTAGCATATCTTCTTCTG
GGGGCTGTTATATTCAAAACGCTCGAATCAACACAAGGAGCAAAAGAACA
GAATCATTTTCGCATACGAAAGCGATTGTTTCAACAGACGTATGGTATTA
ACGATACTGTCTTCGAGGATTTTGTTGAAGAAGTTCGAAGAGCTGTCGAT
GATGGTTATTTCGATGTGGAGTTTGATCGTTGGAGTTTCTTTGGTTCTGT
ATTTTTCACAGCAACTGTTCTTACAACAATAGGTTTTGGTCATATGGCAC
CGCGAACATTTGCTGGTCgactattttgtattttttatgcCCTCTTTGGT
ATTCCACTGACTGGTTTGATGCTGAAATCTTTCGgTGAAAAACTTGTCTC
TGCAATTGATACAATCGGACGAATAATCAAAGATAAATtacgaaagaaga
aaaaatcagcTTTGGATCGAGACGGTGAGAAAACACAAGTGGCCTTGTTC
ACTACGGTGACGTTATTCATGATAATGATATCAATGCTACTTCTGCTGGC
GGGAGTTGCTATGAAGTATGAAGGTTGGAGTTTCTTTGAAGGTTGTTACT
TTGGTTTCGTCACCTTAAGCACCATTGGTTTCGGTGATCTAGTACCAACC
ACACCACGTCAAGGTTTTAACGGCGCGTCGCATGCTCATGTCGCTCTTTT
CATTGTCATGACGGGTATATACATTACGCTTGGCCTTTCTGTCGTGTCAA
GTGTATTGGTTTCACTTTCAAGAATGCTTGAGGATAAAACAGACTGGGAA
TTTGTCTCTCTCCGTGAAGATTATGATGATGGTGATGATTATGAGACTTT
CCATGAAAATGAAACTCTGATAGAAAAATGA
Gene-mRNA-Prot
This mRNA is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this mRNA:
The following exon feature(s) are a part of this mRNA:
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| sc0000080_pilon | genome | sc0000080_pilon:1285852..1292018 + |
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