MSTRG.11146.1.p1 (mRNA) -

Overview


Name	MSTRG.11146.1.p1
Unique Name	MSTRG.11146.1.p1
Type	mRNA
Organism	Clytia hemisphaerica_ch_hm2_pilon (Jellyfish)

Sequence

The following sequences are available for this feature:

mRNA from alignment at sc0000080_pilon:242548..248161+
coding sequence from alignment at sc0000080_pilon:242548..248161+

mRNA from alignment at sc0000080_pilon:242548..248161+

Legend: five_prime_UTRexonpolypeptideCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

>MSTRG.11146.1.p1 ID=MSTRG.11146.1.p1|Name=MSTRG.11146.1.p1|organism=Clytia hemisphaerica_ch_hm2_pilon|type=mRNA|length=5614bp|location=Sequence derived from alignment at sc0000080_pilon:242548..248161+ (Clytia hemisphaerica_ch_hm2_pilon)
caaaaaaaggttcccacctagatatccaggctacaaTAAAGAgctgtttg
aattttttagaaCCAAAAGACAGTGAGAAAAAATGAAGACAGAAGCGGAT
ATAAGCATCCATCATAAACCATTAAAAACACATAAAGAATTAGTGGAAGA
ATTTTACTCTGGCATAACTCTTCATGGATTTCGATTTCTCTTTGAAGGTA
CAAACTATCGCCGCGTCACCTGGTTCATAATCTGTTCAGCAGTATTTGCT
TTCTCAATTTACCTTTTCGAAAGTCTTCTAAATGACTACCTTGCTCATAA
AGTTAATACCAGCATTAGCCGTAGATACGCTACTGGAAAGTTTGACTTTC
CAACTATCGTTATATGCCCTTTAGGTAAGGCTATATCATCAACAAAATAT
GACAACTATCCAATTGATATTGGAATCGATGatcttaaaaatttgaaaag
atatcTTTCGTCAGGCAATAAGGAGAAGGACCACAACAGCAGCAACACAG
CCCGTTTCATTCAGGATTTGATTCAAAAAGGGATTGATACGAAAACAAAG
TTTATCAACTCTTACAATCTTCCgtttgaagaaattttccaaTCAGACGT
GTTGGAACATTTAGAACCAGCAGGAAGCTGTGACTTTTATGATCAAAAAT
GTAACAGCTCTTGGTTCACAGCTCGTTACATTCAAGGAggtaacaatttt
ttttgcggtATGTGAAATAGTtactaacctgataacagatgtggAGTTTT
TGTAACATTTACATTGAATTTCAGAAAGATGCTGAACTAACTGACGATCT
ATGTAGAGGTGAAAATACACAATCTGTTCTCAAGTTAGTTAGCCCTGGAA
AAGTTGGTAGTGTTAAATTTGTGTGAATTCTCTTCTGACTTAAAGATgga
taaaccagctgcgctggaaagtcagccaAGAAAGCTTAGAAATGATTAAG
ACGAAGTATAAATAAAAATCTGAGCTCACCTTACAATATTTGCTTGGAAC
GTTTCAGACGAAAAATGACTTGCACACAGTGGAATCCGTCCGAATCAGAA
GTTAGAAGGCAAATTTATCTCACCTTaggaaatgggcttttccagaaaaa
aaccgtataccccctgttgaggaggtccatCATTTTGTGGCTGGAAATGC
TGTAACCCTCTGGAATTCCAGGCAATTTCAGGTTTAAACCCCTCTGGAAT
TCTGAATTTTAGTAGGATTTAAAAGGCTACCCCCATGGAATTCCAGTTAT
TTTTGACAGATTTTTGTATCTCCCTATGGAATTCCGCCACACATCAAACC
TTACCCCCTTGGAACGGAAatggacctcctcaacagggggtatacggttt
ttttctggaaaagcccaattagaACGAAATCATTTTATCATCCTTTGGCC
TTTTGACAGCTTTCACATATACTTGGGTTGTATACGGAGGCCCATTAGTA
CCATTTAGATTATCCTTTAGTTTTTTAAcgacgaaactaaaaaaaatgac
gacgaaactaaaaataaattgTTGCTTCGTTTTGTCGTcgaacaaattta
caacgaaactaaaaaattgacgacgaaactgaaaataaattgaaaatggt
ggccctgatGGTTTCAATATGCAAATATCATTGATTCTGGCGGATTCTGA
AGATGGATTTGatagttctggtgaatgcaatccTGGTGAAGATGGTTCTT
GTGAATGAGAAACAAACTAGAATAAGTATGTGATGGTGGAGATTGTTGGA
ATCACCAGTGTCATTGGAATCATTTGAactaatcaatgatgaaatgaatg
gtgcaaatgatggaatcaatggtgcaaatgatggaatcaatggtgcaaat
gatgaaaaCAATAGTGCAAATTATGGAATCAATAgtgcaaatgatggaat
caatggtgcaaattATGGAATCAATAgtgcaaatgatggaatcaatggtg
caaatgatggaatcaatggtgcaaatgatggaatcaatggtgcaaatgat
ggaatcaatgagtgcaaatgatggaatcaatggtgcaaatgatggaatCC
ATTGTGCGGGTGATAGAACCAACCATTGATTTTATCATTTGCACTattca
tttcatcattgattatttcCAATGATTCCAATGACACTGGTGATTCCAAC
AATCTCCACCATCACATACTTATTCTAGTTTGTCATTGCCAGCATCTCAT
TCATAAGAACCATCTTCACCagcattgcattcaccagaactatCAAATCC
ATCTTTAGAATCCACCAGAATCAACGATATTTGCATTTTGAAACCATtag
ggccaccattttcaatttttttttagtttcgttgTCAGTTTTTTCAACGA
CGAAACGAaatgataatttattttcagtttcgtCGTCAATTTCTCAGTTT
CGTCGtcacactgggcgaaataagagatttccaatcctggaaatatcttg
aaaatatgatatttcaatatacttttgtaaatatggaaatatgacttttc
tatatttccaaagttgtggaaatgtcatatttcatgatatttccaaatct
aaaatatcacattttcaaaatatttccaacttttggtaatattttgataa
tatgatgtttcaatgaatttcagatttggaaatatcatgaaatatgatat
ttccacaactttggaaatataaaaaagtcatatttccatatttacaaaag
tatatggaaatatcatattttcaagatatttccaggattggaaatctctt
atttcgcccagtgcaattttttaagttcgtcgtcaaTttttttagtttcg
tcgttaaaaaattaaaggaaaatCTAAATGGCACTAATGGGCTTCCGTAG
TTGTAAGTTAACCGGTTTGTGCTTCCCGACGGATCCTTACAGCAGGACTA
AAACGgaggaaaaaaggaaatttttttgaattcgaATACTTTTATTGAGA
cttatttgaccaaatttcgatctttctggggaaaaaaagttaaacatttt
cctatttttcctggGATTGAAATCTAAGTTTCTGATTTTCCTACCCTTTC
AGGTACTGCAACGTTCCAAAAAAGCATCAAGGGGCAGCACATCCGTACTA
TCCGTGCACTTGCCTAAGTAGCCcgtaaattttatgaaaataaatcttAT
CGGAGAtttttttgcattgtgggattgttttgggggtataatataacaat
agaaatctcttaagaattcctcgagggaaatctattgtaatacccccgaa
acaatcccacaatgcatcgctgttttagaaaaattAaaaactccgataag
gtctattgccaGAGCTCTGAGTGTTCCAAATACAGGtttttcttattaat
tttttcgttctttaatttttaGGTTCTTGTTACCAATTCAATGGATTGGA
ATCGTCATTATCGCTGTCTTTAAAAGCACCGAAAAGAATTGGTTACTTTG
ACGGTTTTAATTTAGTATTGGACTTTGGAAAAGCCATGATAGCAAACCCT
TCCTACTCTAATGCTGTTATTACCATGTTTGAGAGTTTCGGGACACGTGA
TGATCACATACCTATTAATGGAGTTATCCAGCTTTCCACTGGAacaaaac
tttttgcaaagatcACCGAAAAAGAGGTATTGAATCTTAATTTGGGGCCT
AAAACCCCCATTTGGTATTCTCCCCCACCTACTCTTTTTCCGGGGCTCCC
CccattggaaaaaatatttttgagaccCAACATTTAATCATCTATTTGAA
ATGTTATATCTAACTTCTGCAATTTCTACCCCCACTTCCCATAAAATATC
CTGAGATCCCCCATTTGCATTAGTCCTCCCATCAAGGTGAAAATATCCAC
TTCCCCTCCACCAGGACAAAAGTTGATCCCCCCATCTTTCTGGGCGAGGA
TCCCATGGGGTTCCACTTGAAGGAAATTAATTTCTATATATTATTTATAA
GCCTCAGCAGAATAGTAGAAAAACTGAATATTTAATTATAGTCCGTCGGT
TAtactcccagctggcacacaacgttgtttcaacgtttatttaacgttca
caacgtccatataacgttagatgaacgttgaaacaacgttgtgtgccagc
tataCTGTGGACGCTTATGGTAGTGAATATTCTGTTGCTCTGTTGCTAAA
GATACAAAACAATTCGAAGCAAGGGTCCAACCTAGTGATAAATTCTAAgc
cttttaaaaatataaatttcttccATTCTGTTTAAATAGAGGGGTaaaaa
aaaCACAGTGTTCTCCCTTagagcatggaggtataaagaaacaggagaag
tatgctattgtaaccatgctcgccctacgattaaaaaaattacgaggtat
gcatgctcataatctcatatatcgtgcatttttaatgagctcttttgttg
ataggtgaaatcttattggctaacttaagtgttggaaataagatgagacg
agattcattgtttctgacattggtgtaagaaaatatttggactaaaaaag
ggcctgtaaactttgcaatccttcatcaaatgacaagatttttcgatcaa
cattttcttcaaggtgaaccatattgcttaatactttcctccaaaattct
ccagcaactttttgtctacaaatttggtctgaaattgtgtgtgcttataa
agaactttttattttctggctggagaaaatatcttttcaaaacaaaattt
aatggatgccaaaattgaacgcaaacttatttcgtggagctaaattttat
tttattctcgtatattagaaggctagaaatcttcgatgctgatagtaaga
atgttcagaacagacttgagttctactaaaaagtcgtatttcgtcgggcg
agcctagaatttcttttgatttattacataaaagaaatcaaaagacttca
acgaccaattaccgacaaattcatctcctgtctttctttatacctctatg
cttAGAGTTTTGTTTGGAAGCTTTGACTACTATCCATGAATTATGCAGTT
TGTCAGATTTCTGTGAAAATAACCATTTGAAATTACTAGACATAATTTAA
AAGTATCTAAAAAATATGATTCTACATACAGACAAAGCTTATTTTGGTCT
CTAACAGTGGATCTTAATTATGCAATTCTgtctaaatagaccttttcata
aattatgtcacgaacatcacttgcctcgttttgaaattattgccatggtg
attaactcccagcgtaTTTTATTACaattactttctattcataaaaaaga
tcatttaatgtctcaagggatatgatcaccatggaaattatCTGGatacg
aggtaagtgatgttcgtgacgtaatttatgaaaatgtctaaATTTTCTGG
TGATTAATTAAATAGCACaccgctatgcaaacgtcatgattattactttt
aacatttgaccgaaattcaatcctacaatccttttcatcttgatttgtaa
tgcgtgcaagttattacttttgtattgtcaataagtgtaattgacttgca
aaagcaattaatgcaaaggatgatgggatCAAAACTTGGACGAACAGTAA
TTTCGATGTTCTTTACTCTTTCAGAATAAAATGTTACCGAGTCCCTATAA
TACCCATTGTGGTa

Coding sequence (CDS) from alignment at sc0000080_pilon:242548..248161+

>MSTRG.11146.1.p1 ID=MSTRG.11146.1.p1|Name=MSTRG.11146.1.p1|organism=Clytia hemisphaerica_ch_hm2_pilon|type=CDS|length=2700bp|location=Sequence derived from alignment at sc0000080_pilon:242548..248161+ (Clytia hemisphaerica_ch_hm2_pilon)
ATGAAGACAGAAGCGGATATAAGCATCCATCATAAACCATTAAAAACACA
TAAAGAATTAGTGGAAGAATTTTACTCTGGCATAACTCTTCATGGATTTC
GATTTCTCTTTGAAGGTACAAACTATCGCCGCGTCACCTGGTTCATAATC
TGTTCAGCAGTATTTGCTTTCTCAATTTACCTTTTCGAAAGTCTTCTAAA
TGACTACCTTGCTCATAAAGTTAATACCAGCATTAGCCGTAGATACGCTA
CTGGAAAGTTTGACTTTCCAACTATCGTTATATGCCCTTTAGGTAAGGCT
ATATCATCAACAAAATATGACAACTATCCAATTGATATTGGAATCGATGa
tcttaaaaatttgaaaagatatcTTTCGTCAGGCAATAAGGAGAAGGACC
ACAACAGCAGCAACACAGCCCGTTTCATTCAGGATTTGATTCAAAAAGGG
ATTGATACGAAAACAAAGTTTATCAACTCTTACAATCTTCCgtttgaaga
aattttccaaTCAGACGTGTTGGAACATTTAGAACCAGCAGGAAGCTGTG
ACTTTTATGATCAAAAATGTAACAGCTCTTGGTTCACAGCTCGTTACATT
CAAGGAgGTTCTTGTTACCAATTCAATGGATTGGAATCGTCATTATCGCT
GTCTTTAAAAGCACCGAAAAGAATTGGTTACTTTGACGGTTTTAATTTAG
TATTGGACTTTGGAAAAGCCATGATAGCAAACCCTTCCTACTCTAATGCT
GTTATTACCATGTTTGAGAGTTTCGGGACACGTGATGATCACATACCTAT
TAATGGAGTTATCCAGCTTTCCACTGGAacaaaactttttgcaaagatcA
CCGAAAAAGAGAATAAAATGTTACCGAGTCCCTATAATACCCATTGTGGT
ATGAAGACAGAAGCGGATATAAGCATCCATCATAAACCATTAAAAACACA
TAAAGAATTAGTGGAAGAATTTTACTCTGGCATAACTCTTCATGGATTTC
GATTTCTCTTTGAAGGTACAAACTATCGCCGCGTCACCTGGTTCATAATC
TGTTCAGCAGTATTTGCTTTCTCAATTTACCTTTTCGAAAGTCTTCTAAA
TGACTACCTTGCTCATAAAGTTAATACCAGCATTAGCCGTAGATACGCTA
CTGGAAAGTTTGACTTTCCAACTATCGTTATATGCCCTTTAGGTAAGGCT
ATATCATCAACAAAATATGACAACTATCCAATTGATATTGGAATCGATGa
tcttaaaaatttgaaaagatatcTTTCGTCAGGCAATAAGGAGAAGGACC
ACAACAGCAGCAACACAGCCCGTTTCATTCAGGATTTGATTCAAAAAGGG
ATTGATACGAAAACAAAGTTTATCAACTCTTACAATCTTCCgtttgaaga
aattttccaaTCAGACGTGTTGGAACATTTAGAACCAGCAGGAAGCTGTG
ACTTTTATGATCAAAAATGTAACAGCTCTTGGTTCACAGCTCGTTACATT
CAAGGAgGTTCTTGTTACCAATTCAATGGATTGGAATCGTCATTATCGCT
GTCTTTAAAAGCACCGAAAAGAATTGGTTACTTTGACGGTTTTAATTTAG
TATTGGACTTTGGAAAAGCCATGATAGCAAACCCTTCCTACTCTAATGCT
GTTATTACCATGTTTGAGAGTTTCGGGACACGTGATGATCACATACCTAT
TAATGGAGTTATCCAGCTTTCCACTGGAacaaaactttttgcaaagatcA
CCGAAAAAGAGAATAAAATGTTACCGAGTCCCTATAATACCCATTGTGGT
ATGAAGACAGAAGCGGATATAAGCATCCATCATAAACCATTAAAAACACA
TAAAGAATTAGTGGAAGAATTTTACTCTGGCATAACTCTTCATGGATTTC
GATTTCTCTTTGAAGGTACAAACTATCGCCGCGTCACCTGGTTCATAATC
TGTTCAGCAGTATTTGCTTTCTCAATTTACCTTTTCGAAAGTCTTCTAAA
TGACTACCTTGCTCATAAAGTTAATACCAGCATTAGCCGTAGATACGCTA
CTGGAAAGTTTGACTTTCCAACTATCGTTATATGCCCTTTAGGTAAGGCT
ATATCATCAACAAAATATGACAACTATCCAATTGATATTGGAATCGATGa
tcttaaaaatttgaaaagatatcTTTCGTCAGGCAATAAGGAGAAGGACC
ACAACAGCAGCAACACAGCCCGTTTCATTCAGGATTTGATTCAAAAAGGG
ATTGATACGAAAACAAAGTTTATCAACTCTTACAATCTTCCgtttgaaga
aattttccaaTCAGACGTGTTGGAACATTTAGAACCAGCAGGAAGCTGTG
ACTTTTATGATCAAAAATGTAACAGCTCTTGGTTCACAGCTCGTTACATT
CAAGGAgGTTCTTGTTACCAATTCAATGGATTGGAATCGTCATTATCGCT
GTCTTTAAAAGCACCGAAAAGAATTGGTTACTTTGACGGTTTTAATTTAG
TATTGGACTTTGGAAAAGCCATGATAGCAAACCCTTCCTACTCTAATGCT
GTTATTACCATGTTTGAGAGTTTCGGGACACGTGATGATCACATACCTAT
TAATGGAGTTATCCAGCTTTCCACTGGAacaaaactttttgcaaagatcA
CCGAAAAAGAGAATAAAATGTTACCGAGTCCCTATAATACCCATTGTGGT

Gene-mRNA-Prot

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type
MSTRG.11146	MSTRG.11146	Clytia hemisphaerica_ch_hm2_pilon	gene

The following exon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type
MSTRG.11146.1.p1.exon1	MSTRG.11146.1.p1.exon1	Clytia hemisphaerica_ch_hm2_pilon	exon
MSTRG.11146.1.p1.exon2	MSTRG.11146.1.p1.exon2	Clytia hemisphaerica_ch_hm2_pilon	exon
MSTRG.11146.1.p1.exon3	MSTRG.11146.1.p1.exon3	Clytia hemisphaerica_ch_hm2_pilon	exon

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type
MSTRG.11146.1.p1	MSTRG.11146.1.p1-protein	Clytia hemisphaerica_ch_hm2_pilon	polypeptide

Position

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
sc0000080_pilon	genome	sc0000080_pilon:242548..248161 +

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MSTRG.11146.1.p1 (mRNA) -